Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48501 * 109.47094 * 240.00222 * 3 2 1 5 5 H 1.48503 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46949 * 120.00282 * 3 2 1 7 7 C 1.38809 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00264 * 165.34006 * 7 2 1 9 9 N 1.36939 * 120.00065 * 345.34312 * 7 2 1 10 10 C 1.46929 * 120.62445 * 328.35646 * 9 7 2 11 11 C 1.53193 * 108.77259 * 233.58444 * 10 9 7 12 12 C 1.53047 * 109.31465 * 305.36581 * 11 10 9 13 13 C 1.53039 * 109.53232 * 61.36561 * 12 11 10 14 14 C 1.46917 * 120.63669 * 148.33274 * 9 7 2 15 15 H 1.09003 * 109.70612 * 246.27398 * 14 9 7 16 16 C 1.53001 * 109.58594 * 6.62729 * 14 9 7 17 17 N 1.46499 * 109.46964 * 299.18363 * 16 14 9 18 18 C 1.34783 * 120.00092 * 179.97438 * 17 16 14 19 19 O 1.21558 * 120.00049 * 0.02562 * 18 17 16 20 20 C 1.47761 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.40595 * 120.26885 * 359.72938 * 20 18 17 22 22 N 1.30801 * 121.53213 * 179.76005 * 21 20 18 23 23 C 1.33821 * 121.72021 * 0.49258 * 22 21 20 24 24 C 1.40525 * 120.81340 * 179.72989 * 23 22 21 25 25 C 1.36131 * 119.81904 * 180.02562 * 24 23 22 26 26 C 1.39332 * 121.08275 * 0.02562 * 25 24 23 27 27 C 1.36144 * 120.83815 * 359.97438 * 26 25 24 28 28 C 1.40536 * 119.62077 * 0.02562 * 27 26 25 29 29 C 1.39022 * 120.26125 * 180.02562 * 20 18 17 30 30 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58682 * 113.79962 * 10 9 7 32 32 H 1.08992 * 109.70897 * 353.44028 * 10 9 7 33 33 H 1.09001 * 109.49766 * 185.41692 * 11 10 9 34 34 H 1.09003 * 109.49868 * 65.31948 * 11 10 9 35 35 H 1.08998 * 109.45689 * 301.34771 * 12 11 10 36 36 H 1.09001 * 109.44750 * 181.37510 * 12 11 10 37 37 H 1.09006 * 109.49267 * 178.68570 * 13 12 11 38 38 H 1.08996 * 109.52509 * 58.60724 * 13 12 11 39 39 H 1.08998 * 109.47449 * 59.18246 * 16 14 9 40 40 H 1.09002 * 109.47593 * 179.18755 * 16 14 9 41 41 H 0.96999 * 120.00171 * 359.97438 * 17 16 14 42 42 H 1.07992 * 119.23695 * 359.97438 * 21 20 18 43 43 H 1.08009 * 120.09141 * 0.03176 * 24 23 22 44 44 H 1.07998 * 119.45896 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.58101 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.18889 * 180.02562 * 27 26 25 47 47 H 1.07994 * 121.01961 * 359.95512 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0639 -1.2172 -0.2372 9 7 1.3591 -2.3689 0.2990 10 6 0.2315 -2.3762 1.2409 11 6 0.5079 -3.4144 2.3329 12 6 0.7921 -4.7702 1.6820 13 6 2.0335 -4.6611 0.7937 14 6 1.7743 -3.6371 -0.3157 15 1 0.9854 -4.0024 -0.9732 16 6 3.0557 -3.4204 -1.1231 17 7 2.8043 -2.4426 -2.1848 18 6 3.7965 -2.0925 -3.0272 19 8 4.8998 -2.5884 -2.9063 20 6 3.5428 -1.1067 -4.0983 21 6 2.2671 -0.5348 -4.2473 22 7 2.0164 0.3434 -5.1837 23 6 2.9568 0.7342 -6.0519 24 6 2.6650 1.6750 -7.0541 25 6 3.6369 2.0578 -7.9270 26 6 4.9244 1.5312 -7.8461 27 6 5.2460 0.6177 -6.8892 28 6 4.2674 0.1996 -5.9713 29 6 4.5620 -0.7420 -4.9705 30 1 -0.4849 0.8400 0.0004 31 1 -0.6850 -2.6375 0.7118 32 1 0.1238 -1.3903 1.6931 33 1 -0.3625 -3.4986 2.9836 34 1 1.3727 -3.1041 2.9195 35 1 -0.0633 -5.0683 1.0758 36 1 0.9650 -5.5160 2.4578 37 1 2.2489 -5.6327 0.3489 38 1 2.8842 -4.3394 1.3944 39 1 3.8412 -3.0485 -0.4653 40 1 3.3700 -4.3652 -1.5665 41 1 1.9239 -2.0472 -2.2815 42 1 1.4768 -0.8247 -3.5709 43 1 1.6722 2.0933 -7.1317 44 1 3.4061 2.7809 -8.6952 45 1 5.6768 1.8518 -8.5515 46 1 6.2473 0.2167 -6.8359 47 1 5.5501 -1.1687 -4.8814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024680173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = 36.880593 kcal Electronic energy + Delta-G solvation = -29563.583801 eV Core-core repulsion = 25711.415292 eV Total energy + Delta-G solvation = -3852.168509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.86399 -39.22143 -37.77758 -36.82469 -34.31588 -33.37577 -33.09456 -31.35946 -30.22726 -30.05580 -29.89763 -26.27330 -25.13899 -24.03119 -23.77538 -22.18317 -22.10757 -20.87083 -20.41443 -19.17927 -18.14532 -17.69607 -17.09313 -16.37083 -15.73856 -15.63032 -15.11098 -14.64608 -14.60254 -14.22068 -14.16365 -14.00990 -13.66938 -13.57303 -13.40494 -13.32930 -12.97922 -12.82156 -12.45824 -12.06010 -11.89370 -11.85396 -11.69496 -11.53961 -11.23896 -10.97938 -10.79385 -10.58783 -10.48108 -10.32565 -10.17755 -10.02668 -9.91439 -9.54009 -9.41876 -9.20987 -8.83944 -8.62109 -8.38170 -8.23766 -6.69128 -5.88335 -3.34993 0.25632 0.65720 1.87331 2.66273 3.32741 3.39562 3.42514 3.49212 3.67350 4.17990 4.28588 4.40685 4.53183 4.70253 4.83844 4.89232 5.03979 5.07255 5.18285 5.25393 5.29041 5.42174 5.48525 5.61282 5.65922 5.71686 5.84794 5.87972 5.94643 6.02719 6.05550 6.11529 6.22417 6.27004 6.31667 6.34160 6.38396 6.48037 6.56942 6.68197 6.70883 6.74409 6.82588 6.93362 7.07109 7.34572 7.60861 7.75700 7.93442 8.12263 8.36978 8.69974 9.12583 9.73852 10.32584 11.18204 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.003534 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.335960 B = 7920.587148 C = 8982.696284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.134 3.866 17 N -0.684 5.684 18 C 0.556 3.444 19 O -0.559 6.559 20 C -0.179 4.179 21 C 0.173 3.827 22 N -0.476 5.476 23 C 0.139 3.861 24 C -0.096 4.096 25 C -0.098 4.098 26 C -0.126 4.126 27 C -0.086 4.086 28 C -0.115 4.115 29 C 0.002 3.998 30 H 0.256 0.744 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.415 0.585 42 H 0.170 0.830 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -1.955 -10.763 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.186 4.186 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.334 5.334 18 C 0.341 3.659 19 O -0.440 6.440 20 C -0.184 4.184 21 C 0.000 4.000 22 N -0.184 5.184 23 C 0.018 3.982 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.144 4.144 27 C -0.104 4.104 28 C -0.117 4.117 29 C -0.025 4.025 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.187 0.813 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.149 0.851 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.686 -1.731 -10.817 11.915 hybrid contribution 0.792 0.867 0.287 1.209 sum 5.478 -0.864 -10.530 11.901 Atomic orbital electron populations 1.69983 1.05072 1.25786 1.52935 1.25034 0.95122 0.97966 1.00460 0.86594 0.79226 0.84034 0.78379 1.20824 1.21499 1.20986 1.19115 0.92114 0.84103 1.43329 0.91421 1.44049 1.37363 1.02021 1.47751 1.20733 0.88728 0.97362 0.88301 1.22196 1.00040 0.96579 0.99540 1.21360 0.97652 0.97367 0.98113 1.21937 0.98320 0.98208 0.98226 1.20738 0.93275 0.88604 0.92098 0.94963 1.21349 0.98576 0.90523 0.88504 1.45940 1.14341 1.43140 1.29991 1.17882 0.84836 0.81577 0.81582 1.90712 1.23462 1.56077 1.73733 1.21113 0.96037 1.01900 0.99384 1.23310 0.94908 0.88984 0.92827 1.68019 1.33774 1.12523 1.04045 1.19083 0.88980 0.95630 0.94508 1.20846 1.00427 0.96476 0.93746 1.20926 0.92986 0.99269 0.98633 1.20884 0.96851 0.97713 0.98983 1.21042 0.98503 0.96910 0.93981 1.18837 0.95272 0.99515 0.98110 1.21917 0.99327 0.91366 0.89859 0.93400 0.96275 0.89975 0.93537 0.92829 0.92847 0.93712 0.93008 0.92057 0.91286 0.92363 0.74645 0.81283 0.84578 0.85340 0.85538 0.85080 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 11.32 55.49 0.63 -23.12 16 2 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 3 Si 0.89 21.25 29.58 -169.99 -5.03 16.22 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.25 6.98 -15.06 -0.11 -6.36 16 8 H 0.07 1.70 5.90 -52.49 -0.31 1.40 16 9 N -0.59 -13.01 2.97 -164.78 -0.49 -13.50 16 10 C 0.17 3.82 5.26 -3.71 -0.02 3.80 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.86 16 13 C -0.13 -2.06 5.37 -26.61 -0.14 -2.21 16 14 C 0.16 2.98 3.00 -67.61 -0.20 2.77 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.45 4.43 -4.04 -0.02 2.44 16 17 N -0.68 -12.82 3.83 -61.28 -0.23 -13.05 16 18 C 0.56 10.54 7.77 -12.36 -0.10 10.45 16 19 O -0.56 -11.70 16.38 5.32 0.09 -11.61 16 20 C -0.18 -3.10 5.89 -104.83 -0.62 -3.72 16 21 C 0.17 3.03 10.68 -17.10 -0.18 2.84 16 22 N -0.48 -8.33 10.30 -10.68 -0.11 -8.44 16 23 C 0.14 2.17 6.61 -84.79 -0.56 1.61 16 24 C -0.10 -1.21 9.97 -39.48 -0.39 -1.61 16 25 C -0.10 -0.97 9.94 -39.93 -0.40 -1.37 16 26 C -0.13 -1.20 9.96 -39.93 -0.40 -1.60 16 27 C -0.09 -0.95 9.77 -39.47 -0.39 -1.33 16 28 C -0.12 -1.66 5.74 -106.82 -0.61 -2.27 16 29 C 0.00 0.03 9.46 -38.43 -0.36 -0.33 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 2.04 6.27 -51.93 -0.33 1.72 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.41 7.99 5.47 -40.82 -0.22 7.77 16 42 H 0.17 2.94 6.37 -52.49 -0.33 2.60 16 43 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 47 H 0.15 2.08 7.70 -52.49 -0.40 1.68 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -29.13 376.36 -10.99 -40.12 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.61 Total: 8.94 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.90 Total: -1.24 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.21 Total: -58.10 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.13 -10.99 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024680173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.997 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds