Wall clock time and date at job start Tue Mar 31 2020 22:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48501 * 109.47094 * 240.00222 * 3 2 1 5 5 H 1.48503 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46949 * 120.00282 * 3 2 1 7 7 C 1.38809 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00264 * 165.34006 * 7 2 1 9 9 N 1.36939 * 120.00065 * 345.34312 * 7 2 1 10 10 C 1.46929 * 120.62445 * 328.35646 * 9 7 2 11 11 C 1.53193 * 108.77259 * 233.58444 * 10 9 7 12 12 C 1.53047 * 109.31465 * 305.36581 * 11 10 9 13 13 C 1.53039 * 109.53232 * 61.36561 * 12 11 10 14 14 C 1.46917 * 120.63669 * 148.33274 * 9 7 2 15 15 H 1.09003 * 109.70612 * 246.27398 * 14 9 7 16 16 C 1.53001 * 109.58594 * 6.62729 * 14 9 7 17 17 N 1.46499 * 109.46964 * 299.18363 * 16 14 9 18 18 C 1.34783 * 120.00092 * 179.97438 * 17 16 14 19 19 O 1.21558 * 120.00049 * 0.02562 * 18 17 16 20 20 C 1.47761 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.40595 * 120.26885 * 359.72938 * 20 18 17 22 22 N 1.30801 * 121.53213 * 179.76005 * 21 20 18 23 23 C 1.33821 * 121.72021 * 0.49258 * 22 21 20 24 24 C 1.40525 * 120.81340 * 179.72989 * 23 22 21 25 25 C 1.36131 * 119.81904 * 180.02562 * 24 23 22 26 26 C 1.39332 * 121.08275 * 0.02562 * 25 24 23 27 27 C 1.36144 * 120.83815 * 359.97438 * 26 25 24 28 28 C 1.40536 * 119.62077 * 0.02562 * 27 26 25 29 29 C 1.39022 * 120.26125 * 180.02562 * 20 18 17 30 30 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58682 * 113.79962 * 10 9 7 32 32 H 1.08992 * 109.70897 * 353.44028 * 10 9 7 33 33 H 1.09001 * 109.49766 * 185.41692 * 11 10 9 34 34 H 1.09003 * 109.49868 * 65.31948 * 11 10 9 35 35 H 1.08998 * 109.45689 * 301.34771 * 12 11 10 36 36 H 1.09001 * 109.44750 * 181.37510 * 12 11 10 37 37 H 1.09006 * 109.49267 * 178.68570 * 13 12 11 38 38 H 1.08996 * 109.52509 * 58.60724 * 13 12 11 39 39 H 1.08998 * 109.47449 * 59.18246 * 16 14 9 40 40 H 1.09002 * 109.47593 * 179.18755 * 16 14 9 41 41 H 0.96999 * 120.00171 * 359.97438 * 17 16 14 42 42 H 1.07992 * 119.23695 * 359.97438 * 21 20 18 43 43 H 1.08009 * 120.09141 * 0.03176 * 24 23 22 44 44 H 1.07998 * 119.45896 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.58101 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.18889 * 180.02562 * 27 26 25 47 47 H 1.07994 * 121.01961 * 359.95512 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0639 -1.2172 -0.2372 9 7 1.3591 -2.3689 0.2990 10 6 0.2315 -2.3762 1.2409 11 6 0.5079 -3.4144 2.3329 12 6 0.7921 -4.7702 1.6820 13 6 2.0335 -4.6611 0.7937 14 6 1.7743 -3.6371 -0.3157 15 1 0.9854 -4.0024 -0.9732 16 6 3.0557 -3.4204 -1.1231 17 7 2.8043 -2.4426 -2.1848 18 6 3.7965 -2.0925 -3.0272 19 8 4.8998 -2.5884 -2.9063 20 6 3.5428 -1.1067 -4.0983 21 6 2.2671 -0.5348 -4.2473 22 7 2.0164 0.3434 -5.1837 23 6 2.9568 0.7342 -6.0519 24 6 2.6650 1.6750 -7.0541 25 6 3.6369 2.0578 -7.9270 26 6 4.9244 1.5312 -7.8461 27 6 5.2460 0.6177 -6.8892 28 6 4.2674 0.1996 -5.9713 29 6 4.5620 -0.7420 -4.9705 30 1 -0.4849 0.8400 0.0004 31 1 -0.6850 -2.6375 0.7118 32 1 0.1238 -1.3903 1.6931 33 1 -0.3625 -3.4986 2.9836 34 1 1.3727 -3.1041 2.9195 35 1 -0.0633 -5.0683 1.0758 36 1 0.9650 -5.5160 2.4578 37 1 2.2489 -5.6327 0.3489 38 1 2.8842 -4.3394 1.3944 39 1 3.8412 -3.0485 -0.4653 40 1 3.3700 -4.3652 -1.5665 41 1 1.9239 -2.0472 -2.2815 42 1 1.4768 -0.8247 -3.5709 43 1 1.6722 2.0933 -7.1317 44 1 3.4061 2.7809 -8.6952 45 1 5.6768 1.8518 -8.5515 46 1 6.2473 0.2167 -6.8359 47 1 5.5501 -1.1687 -4.8814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024680173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:18 Heat of formation + Delta-G solvation = 21.093074 kcal Electronic energy + Delta-G solvation = -29564.268399 eV Core-core repulsion = 25711.415292 eV Total energy + Delta-G solvation = -3852.853107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01704 -40.64617 -39.30717 -37.91435 -35.81233 -34.90378 -34.51118 -32.73442 -31.77254 -31.37012 -31.04638 -27.80757 -26.76428 -25.19080 -25.04224 -23.80473 -23.12433 -22.34773 -21.82431 -20.71964 -19.41414 -18.90619 -18.33328 -18.00723 -17.35551 -16.87439 -16.47701 -16.22644 -15.82422 -15.60700 -15.56330 -15.24686 -15.09489 -14.86271 -14.78935 -14.52606 -14.42565 -14.14420 -14.06083 -13.60214 -13.45038 -12.88533 -12.86967 -12.75046 -12.74034 -12.59388 -12.43846 -12.34620 -12.08615 -11.79122 -11.62061 -11.51892 -11.37256 -11.09049 -10.98119 -10.55515 -10.52199 -10.03518 -9.77507 -9.31439 -8.55513 -7.85447 -5.31050 -0.82538 -0.45176 0.82412 1.35899 1.41075 1.43494 1.51837 2.17472 2.30700 2.45906 3.03745 3.15082 3.30284 3.53232 3.57328 3.63451 3.71110 3.78995 3.97013 4.00643 4.20417 4.23805 4.28250 4.31048 4.41683 4.44874 4.55956 4.66009 4.67497 4.72774 4.84486 4.88553 4.93597 5.01641 5.03839 5.15616 5.24017 5.29669 5.33053 5.37128 5.40247 5.43875 5.48069 5.56626 5.63695 5.74779 5.83739 5.84921 6.43217 6.58657 6.74424 7.17668 7.19846 7.88163 8.41605 9.18529 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.003534 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.335960 B = 7920.587148 C = 8982.696284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 0.927 3.073 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.159 3.841 15 H 0.034 0.966 16 C 0.138 3.862 17 N -0.687 5.687 18 C 0.558 3.442 19 O -0.582 6.582 20 C -0.205 4.205 21 C 0.159 3.841 22 N -0.500 5.500 23 C 0.114 3.886 24 C -0.123 4.123 25 C -0.075 4.075 26 C -0.113 4.113 27 C -0.090 4.090 28 C -0.129 4.129 29 C 0.010 3.990 30 H 0.248 0.752 31 H 0.002 0.998 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.411 0.589 42 H 0.157 0.843 43 H 0.140 0.860 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.159 0.841 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -2.397 -12.711 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.220 4.220 3 Si 0.757 3.243 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.336 5.336 18 C 0.345 3.655 19 O -0.466 6.466 20 C -0.210 4.210 21 C -0.014 4.014 22 N -0.207 5.207 23 C -0.007 4.007 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.131 4.131 29 C -0.016 4.016 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.249 0.751 42 H 0.174 0.826 43 H 0.158 0.842 44 H 0.186 0.814 45 H 0.187 0.813 46 H 0.177 0.823 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.549 -2.194 -12.758 14.507 hybrid contribution 0.299 1.082 0.687 1.316 sum 6.847 -1.112 -12.071 13.922 Atomic orbital electron populations 1.70072 1.05711 1.25340 1.55190 1.25356 0.95441 0.99442 1.01777 0.85985 0.78127 0.82516 0.77629 1.21679 1.22110 1.21210 1.19097 0.91656 0.84943 1.40931 0.92286 1.44231 1.37162 1.02700 1.48391 1.20563 0.88135 0.96906 0.89108 1.22051 1.00461 0.96659 0.98264 1.21347 0.97526 0.96403 0.98743 1.21889 0.98313 0.98641 0.97236 1.20912 0.93209 0.87594 0.93017 0.94801 1.21357 0.97809 0.91197 0.88206 1.45980 1.14170 1.43297 1.30166 1.18108 0.84324 0.81401 0.81660 1.90676 1.24133 1.57164 1.74580 1.20955 0.96773 1.03009 1.00300 1.23085 0.94911 0.90016 0.93415 1.67959 1.35204 1.12875 1.04704 1.19577 0.89421 0.96711 0.95017 1.21065 1.01846 0.96932 0.94289 1.21448 0.92303 0.98139 0.97592 1.21433 0.97433 0.95773 0.98391 1.21417 0.98937 0.97168 0.93332 1.19084 0.95742 0.99474 0.98763 1.22156 0.99209 0.90961 0.89298 0.94223 0.97959 0.93478 0.91788 0.93593 0.92406 0.90724 0.89829 0.92694 0.93187 0.90248 0.75137 0.82614 0.84208 0.81450 0.81275 0.82308 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.96 11.32 21.65 0.25 -50.71 16 2 C -0.02 -1.21 4.95 84.86 0.42 -0.79 16 3 Si 0.93 45.37 29.58 68.60 2.03 47.40 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.24 -11.85 6.98 84.03 0.59 -11.26 16 8 H 0.06 3.08 5.90 -2.91 -0.02 3.06 16 9 N -0.60 -27.11 2.97 -675.26 -2.00 -29.12 16 10 C 0.18 7.99 5.26 86.36 0.45 8.45 16 11 C -0.14 -4.75 6.08 30.67 0.19 -4.56 16 12 C -0.10 -2.99 5.88 30.62 0.18 -2.81 16 13 C -0.12 -3.67 5.37 30.67 0.16 -3.50 16 14 C 0.16 5.85 3.00 44.98 0.14 5.98 16 15 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 16 C 0.14 5.06 4.43 86.38 0.38 5.44 16 17 N -0.69 -26.74 3.83 -466.05 -1.79 -28.53 16 18 C 0.56 21.95 7.77 86.76 0.67 22.62 16 19 O -0.58 -24.80 16.38 -3.90 -0.06 -24.87 16 20 C -0.21 -7.43 5.89 -20.00 -0.12 -7.55 16 21 C 0.16 5.97 10.68 85.42 0.91 6.88 16 22 N -0.50 -18.38 10.30 -187.69 -1.93 -20.31 16 23 C 0.11 3.55 6.61 40.27 0.27 3.81 16 24 C -0.12 -2.92 9.97 22.34 0.22 -2.70 16 25 C -0.08 -1.18 9.94 22.04 0.22 -0.96 16 26 C -0.11 -1.59 9.96 22.05 0.22 -1.37 16 27 C -0.09 -1.69 9.77 22.34 0.22 -1.48 16 28 C -0.13 -3.58 5.74 -21.29 -0.12 -3.70 16 29 C 0.01 0.32 9.46 23.02 0.22 0.54 16 30 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.05 2.43 6.27 -2.39 -0.01 2.42 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 2.03 7.38 -2.39 -0.02 2.01 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.41 16.76 5.47 -92.71 -0.51 16.26 16 42 H 0.16 6.00 6.37 -2.91 -0.02 5.98 16 43 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 44 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.16 4.45 7.70 -2.91 -0.02 4.42 16 Total: -1.00 -66.77 376.36 2.19 -64.58 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.48 Total: 28.52 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.22 Total: 13.03 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -5.48 Total: -128.67 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.77 2.19 -64.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024680173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.678 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds