Wall clock time and date at job start Tue Mar 31 2020 22:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46913 * 300.00417 * 3 2 1 6 6 H 1.48503 * 109.47003 * 59.99995 * 3 2 1 7 7 C 1.38809 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00112 * 194.13528 * 7 2 1 9 9 N 1.36944 * 119.99855 * 14.14019 * 7 2 1 10 10 C 1.46930 * 120.62948 * 30.95374 * 9 7 2 11 11 C 1.53194 * 108.77235 * 126.39103 * 10 9 7 12 12 C 1.53037 * 109.31112 * 54.63677 * 11 10 9 13 13 C 1.53039 * 109.53701 * 298.63174 * 12 11 10 14 14 C 1.46916 * 120.63016 * 210.95612 * 9 7 2 15 15 H 1.08998 * 109.70715 * 113.74814 * 14 9 7 16 16 C 1.53001 * 109.58819 * 353.39374 * 14 9 7 17 17 N 1.46495 * 109.47110 * 60.70452 * 16 14 9 18 18 C 1.34780 * 120.00171 * 179.97438 * 17 16 14 19 19 O 1.21549 * 119.99832 * 0.28121 * 18 17 16 20 20 C 1.47880 * 120.00124 * 180.02562 * 18 17 16 21 21 C 1.40580 * 119.70443 * 0.02562 * 20 18 17 22 22 C 1.35813 * 120.73185 * 179.97438 * 21 20 18 23 23 C 1.40551 * 119.98585 * 0.02562 * 22 21 20 24 24 C 1.40814 * 121.13547 * 179.97438 * 23 22 21 25 25 C 1.36554 * 118.20037 * 180.02562 * 24 23 22 26 26 C 1.39420 * 119.93765 * 359.97438 * 25 24 23 27 27 N 1.31016 * 121.71549 * 0.02562 * 26 25 24 28 28 C 1.33751 * 121.34935 * 359.97438 * 27 26 25 29 29 C 1.38404 * 119.70815 * 179.73163 * 20 18 17 30 30 H 0.97002 * 120.00623 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58473 * 6.60809 * 10 9 7 32 32 H 1.08998 * 109.70382 * 246.25391 * 10 9 7 33 33 H 1.08996 * 109.50098 * 294.68167 * 11 10 9 34 34 H 1.09002 * 109.49466 * 174.58519 * 11 10 9 35 35 H 1.09002 * 109.46133 * 178.61161 * 12 11 10 36 36 H 1.09005 * 109.45306 * 58.64664 * 12 11 10 37 37 H 1.08999 * 109.50106 * 301.41256 * 13 12 11 38 38 H 1.09005 * 109.51990 * 181.33691 * 13 12 11 39 39 H 1.08997 * 109.46985 * 300.70417 * 16 14 9 40 40 H 1.09001 * 109.46902 * 180.70687 * 16 14 9 41 41 H 0.96998 * 120.00341 * 0.02562 * 17 16 14 42 42 H 1.07995 * 119.63413 * 359.95336 * 21 20 18 43 43 H 1.07999 * 120.00764 * 180.02562 * 22 21 20 44 44 H 1.08004 * 120.90220 * 359.97438 * 24 23 22 45 45 H 1.08004 * 120.02959 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.14157 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.23303 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0657 -1.2161 0.2289 9 7 1.3567 -2.3702 -0.2887 10 6 0.2122 -2.3794 -1.2101 11 6 0.4718 -3.4152 -2.3084 12 6 0.7715 -4.7710 -1.6649 13 6 2.0284 -4.6598 -0.7990 14 6 1.7865 -3.6381 0.3165 15 1 1.0108 -4.0066 0.9877 16 6 3.0817 -3.4189 1.1010 17 7 2.8476 -2.4414 2.1668 18 6 3.8537 -2.0901 2.9919 19 8 4.9566 -2.5806 2.8486 20 6 3.6172 -1.1039 4.0681 21 6 2.3404 -0.5370 4.2253 22 6 2.0999 0.3704 5.2068 23 6 3.1338 0.7524 6.0789 24 6 2.9115 1.6913 7.1046 25 6 3.9587 2.0194 7.9172 26 6 5.2055 1.4278 7.7185 27 7 5.4091 0.5545 6.7633 28 6 4.4261 0.1896 5.9330 29 6 4.6533 -0.7517 4.9155 30 1 -0.4851 0.8400 0.0004 31 1 0.0962 -1.3926 -1.6585 32 1 -0.6951 -2.6426 -0.6665 33 1 1.3249 -3.1016 -2.9101 34 1 -0.4100 -3.5009 -2.9434 35 1 0.9324 -5.5155 -2.4446 36 1 -0.0720 -5.0723 -1.0436 37 1 2.8669 -4.3345 -1.4147 38 1 2.2552 -5.6313 -0.3596 39 1 3.8546 -3.0458 0.4292 40 1 3.4055 -4.3632 1.5387 41 1 1.9683 -2.0476 2.2791 42 1 1.5421 -0.8259 3.5578 43 1 1.1144 0.7982 5.3172 44 1 1.9392 2.1404 7.2442 45 1 3.8211 2.7360 8.7135 46 1 6.0247 1.6964 8.3690 47 1 5.6308 -1.1940 4.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024716205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:42 Heat of formation + Delta-G solvation = 37.814611 kcal Electronic energy + Delta-G solvation = -29547.127144 eV Core-core repulsion = 25694.999137 eV Total energy + Delta-G solvation = -3852.128007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86374 -39.34458 -37.82594 -36.56213 -34.28901 -33.50081 -33.11479 -31.32738 -30.24102 -29.96401 -29.91750 -26.32047 -25.20722 -24.02127 -23.79737 -22.21048 -22.06158 -20.84942 -20.43134 -19.19632 -18.20412 -17.47033 -16.89946 -16.49014 -15.81273 -15.63143 -15.28885 -14.59399 -14.46263 -14.23062 -14.10456 -13.92030 -13.72083 -13.62355 -13.43004 -13.32516 -13.11888 -12.87727 -12.47516 -12.07977 -11.89853 -11.82067 -11.55129 -11.46838 -11.22164 -10.99599 -10.81435 -10.59973 -10.57929 -10.31326 -10.17324 -10.03099 -9.66515 -9.57859 -9.50470 -9.32306 -8.83205 -8.63258 -8.33862 -8.20134 -6.71698 -5.90001 -3.36139 0.27000 0.65880 1.89074 2.61446 3.28153 3.38446 3.43682 3.55160 3.68049 4.18641 4.27804 4.39098 4.52057 4.64190 4.78121 4.93854 5.05226 5.16403 5.20499 5.27541 5.29480 5.44122 5.47888 5.60958 5.65528 5.72780 5.86027 5.88003 5.94335 6.00699 6.06076 6.11932 6.25341 6.33397 6.37609 6.38664 6.41385 6.46754 6.56906 6.67557 6.70323 6.76394 6.82354 6.93732 7.10366 7.34123 7.60693 7.74939 7.82112 8.16718 8.35124 8.75520 9.11103 9.72393 10.30400 11.16446 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.003511 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.822675 B = 7972.367171 C = 9040.759073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.011 3.989 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.685 5.685 18 C 0.548 3.452 19 O -0.556 6.556 20 C -0.103 4.103 21 C -0.078 4.078 22 C -0.105 4.105 23 C -0.088 4.088 24 C -0.060 4.060 25 C -0.175 4.175 26 C 0.123 3.877 27 N -0.466 5.466 28 C 0.115 3.885 29 C -0.033 4.033 30 H 0.253 0.747 31 H 0.084 0.916 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.415 0.585 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.158 0.842 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -0.474 10.975 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.009 3.991 17 N -0.336 5.336 18 C 0.334 3.666 19 O -0.436 6.436 20 C -0.108 4.108 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.090 4.090 24 C -0.086 4.086 25 C -0.195 4.195 26 C -0.051 4.051 27 N -0.174 5.174 28 C -0.006 4.006 29 C -0.053 4.053 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.175 0.825 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.664 -1.144 10.631 11.020 hybrid contribution -0.939 1.701 0.021 1.943 sum 1.725 0.557 10.653 10.806 Atomic orbital electron populations 1.70010 1.05071 1.25406 1.53725 1.25018 0.95131 0.97953 1.00714 0.86465 0.79934 0.84563 0.77520 1.20129 1.21475 1.21482 1.19262 0.92133 0.84004 1.42681 0.91164 1.44089 1.35863 1.01982 1.49331 1.20755 0.88428 0.97530 0.88494 1.22194 0.99976 0.96572 0.99616 1.21360 0.97551 0.97376 0.98206 1.21939 0.98239 0.98236 0.98301 1.20735 0.93162 0.88566 0.92224 0.95003 1.21345 0.98484 0.90622 0.88602 1.45936 1.13965 1.43240 1.30416 1.18102 0.84794 0.81797 0.81857 1.90722 1.23738 1.56057 1.73114 1.20073 0.94286 0.99153 0.97256 1.21219 0.96373 0.95127 0.96965 1.20891 0.98550 0.97970 0.94916 1.18967 0.94836 0.98020 0.97178 1.21514 0.99707 0.94556 0.92808 1.21903 0.94324 1.02024 1.01234 1.22943 0.96312 0.91654 0.94172 1.68005 1.32860 1.12750 1.03788 1.18748 0.89069 0.97089 0.95681 1.21190 0.99674 0.93530 0.90904 0.93637 0.89758 0.96340 0.92824 0.93539 0.93700 0.92875 0.92038 0.92983 0.91307 0.92383 0.74629 0.84048 0.84661 0.84293 0.84594 0.82454 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 11.23 55.49 0.62 -22.83 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.20 16 3 Si 0.89 20.88 29.58 -169.99 -5.03 15.85 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.10 7.01 -15.06 -0.11 -6.21 16 8 H 0.07 1.79 5.85 -52.49 -0.31 1.48 16 9 N -0.59 -13.02 2.97 -164.78 -0.49 -13.51 16 10 C 0.17 3.79 5.27 -3.71 -0.02 3.77 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.37 -26.61 -0.14 -2.23 16 14 C 0.16 3.00 3.00 -67.60 -0.20 2.79 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.48 4.43 -4.04 -0.02 2.46 16 17 N -0.68 -12.99 3.81 -61.24 -0.23 -13.22 16 18 C 0.55 10.68 7.77 -12.31 -0.10 10.58 16 19 O -0.56 -12.15 16.30 5.32 0.09 -12.06 16 20 C -0.10 -1.79 5.87 -105.01 -0.62 -2.40 16 21 C -0.08 -1.24 9.44 -39.57 -0.37 -1.61 16 22 C -0.10 -1.45 9.74 -39.58 -0.39 -1.83 16 23 C -0.09 -1.22 5.75 -106.73 -0.61 -1.84 16 24 C -0.06 -0.64 9.88 -39.22 -0.39 -1.03 16 25 C -0.17 -1.63 10.03 -39.75 -0.40 -2.03 16 26 C 0.12 1.33 11.15 -17.46 -0.19 1.14 16 27 N -0.47 -6.81 10.34 -10.98 -0.11 -6.92 16 28 C 0.11 1.80 6.60 -84.87 -0.56 1.24 16 29 C -0.03 -0.56 9.56 -38.69 -0.37 -0.93 16 30 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.08 2.09 6.19 -51.93 -0.32 1.77 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.41 7.39 -51.93 -0.38 1.02 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.41 7.97 5.42 -40.82 -0.22 7.75 16 42 H 0.14 2.25 6.34 -52.49 -0.33 1.91 16 43 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 46 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.15 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -29.44 375.95 -10.98 -40.41 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.60 Total: 9.18 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.89 Total: -2.57 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.21 Total: -56.49 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.44 -10.98 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024716205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.229 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds