Wall clock time and date at job start Tue Mar 31 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48508 * 109.46883 * 265.90999 * 3 2 1 5 5 H 1.48504 * 109.47015 * 25.90341 * 3 2 1 6 6 H 1.48497 * 109.47535 * 145.90860 * 3 2 1 7 7 C 1.38816 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99680 * 35.76506 * 7 2 1 9 9 N 1.36941 * 119.99955 * 215.48958 * 7 2 1 10 10 C 1.46919 * 120.62865 * 40.75975 * 9 7 2 11 11 C 1.53197 * 108.77576 * 126.36792 * 10 9 7 12 12 C 1.53046 * 109.30927 * 54.63062 * 11 10 9 13 13 C 1.53035 * 109.54176 * 298.63420 * 12 11 10 14 14 C 1.46921 * 120.62768 * 220.47697 * 9 7 2 15 15 H 1.09004 * 109.58509 * 113.84447 * 14 9 7 16 16 C 1.53007 * 109.59069 * 353.42281 * 14 9 7 17 17 N 1.46503 * 109.46861 * 60.35773 * 16 14 9 18 18 C 1.34777 * 119.99406 * 180.02562 * 17 16 14 19 19 O 1.21586 * 120.00009 * 0.02562 * 18 17 16 20 20 C 1.47564 * 119.99886 * 180.02562 * 18 17 16 21 21 C 1.38714 * 120.43236 * 354.19286 * 20 18 17 22 22 C 1.38995 * 120.75100 * 180.02562 * 21 20 18 23 23 C 1.36351 * 121.19332 * 359.97438 * 22 21 20 24 24 C 1.40348 * 119.92704 * 359.97438 * 23 22 21 25 25 C 1.40689 * 122.10401 * 180.02562 * 24 23 22 26 26 C 1.36271 * 118.66279 * 179.12720 * 25 24 23 27 27 N 1.32511 * 121.83665 * 0.91796 * 26 25 24 28 28 C 1.31311 * 122.72252 * 359.37606 * 27 26 25 29 29 C 1.40134 * 119.91928 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99649 * 0.02562 * 1 2 3 31 31 H 1.09008 * 109.58610 * 246.15142 * 10 9 7 32 32 H 1.08997 * 109.59359 * 6.43620 * 10 9 7 33 33 H 1.08995 * 109.50197 * 174.58147 * 11 10 9 34 34 H 1.08996 * 109.49572 * 294.65117 * 11 10 9 35 35 H 1.09001 * 109.45997 * 58.66264 * 12 11 10 36 36 H 1.08999 * 109.45774 * 178.63004 * 12 11 10 37 37 H 1.08995 * 109.50257 * 181.31727 * 13 12 11 38 38 H 1.09000 * 109.49856 * 301.38577 * 13 12 11 39 39 H 1.08993 * 109.47356 * 180.36394 * 16 14 9 40 40 H 1.09006 * 109.46575 * 300.36187 * 16 14 9 41 41 H 0.96989 * 120.00327 * 0.02562 * 17 16 14 42 42 H 1.07994 * 119.62180 * 0.02562 * 21 20 18 43 43 H 1.08004 * 119.40726 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.03461 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.66334 * 359.95518 * 25 24 23 46 46 H 1.08005 * 119.07754 * 180.29701 * 26 25 24 47 47 H 1.07996 * 120.03736 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5842 1.9964 -1.3966 5 1 1.4071 2.6761 0.6117 6 1 3.5019 1.4667 0.7847 7 6 2.0102 -1.2022 0.0005 8 1 1.6229 -2.0495 -0.5457 9 7 3.1888 -1.3120 0.6891 10 6 3.3410 -0.6981 2.0152 11 6 3.8162 -1.7687 3.0026 12 6 5.0895 -2.4248 2.4636 13 6 4.7891 -3.1021 1.1246 14 6 4.3230 -2.0513 0.1184 15 1 5.1408 -1.3615 -0.0906 16 6 3.8868 -2.7412 -1.1758 17 7 3.4376 -1.7329 -2.1391 18 6 3.0040 -2.1114 -3.3578 19 8 2.9852 -3.2896 -3.6575 20 6 2.5521 -1.0959 -4.3284 21 6 2.4557 0.2371 -3.9570 22 6 2.0303 1.1990 -4.8657 23 6 1.6965 0.8638 -6.1445 24 6 1.7806 -0.4733 -6.5625 25 6 1.4481 -0.8700 -7.8707 26 6 1.5727 -2.1848 -8.2066 27 7 1.9789 -3.0941 -7.3325 28 6 2.2993 -2.7954 -6.0946 29 6 2.2183 -1.4681 -5.6525 30 1 -0.4849 0.8401 -0.0004 31 1 4.0771 0.1043 1.9641 32 1 2.3831 -0.2948 2.3433 33 1 4.0253 -1.3068 3.9674 34 1 3.0395 -2.5241 3.1216 35 1 5.8577 -1.6646 2.3219 36 1 5.4433 -3.1702 3.1759 37 1 5.6905 -3.5890 0.7527 38 1 4.0038 -3.8456 1.2610 39 1 4.7277 -3.2942 -1.5940 40 1 3.0690 -3.4297 -0.9625 41 1 3.4522 -0.7931 -1.8998 42 1 2.7142 0.5308 -2.9504 43 1 1.9629 2.2307 -4.5532 44 1 1.3678 1.6265 -6.8349 45 1 1.1139 -0.1449 -8.5980 46 1 1.3240 -2.4960 -9.2105 47 1 2.6249 -3.5717 -5.4181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024736993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:46 Heat of formation + Delta-G solvation = 47.083546 kcal Electronic energy + Delta-G solvation = -30044.401104 eV Core-core repulsion = 26192.675029 eV Total energy + Delta-G solvation = -3851.726076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.88889 -39.19608 -37.95984 -37.02016 -34.43062 -33.11400 -32.82473 -31.20616 -31.01782 -30.77790 -29.44628 -26.30483 -25.02659 -24.16873 -23.35262 -22.79527 -22.50364 -20.82766 -20.26067 -19.40588 -17.82061 -17.63823 -16.65630 -16.54597 -15.95198 -15.58247 -15.42708 -14.99122 -14.67338 -14.40520 -14.28618 -13.91197 -13.71088 -13.60253 -13.53960 -13.20848 -13.08641 -12.67898 -12.46396 -12.27989 -12.11897 -11.96077 -11.86876 -11.64659 -11.49245 -11.37040 -10.85379 -10.66510 -10.55610 -10.25490 -10.02983 -9.96886 -9.76664 -9.67311 -9.45547 -9.13414 -9.04173 -8.61774 -8.39560 -7.95362 -6.85277 -6.23946 -3.52995 0.24018 0.99079 1.77138 2.92238 3.14180 3.32599 3.36445 3.52565 3.65692 4.26118 4.38964 4.57796 4.67009 4.72979 4.82019 4.89540 5.02494 5.06804 5.10271 5.16433 5.28131 5.39478 5.42109 5.49201 5.68315 5.75639 5.77507 5.83893 5.86482 5.95949 6.05189 6.11022 6.15487 6.19136 6.22097 6.31715 6.40733 6.41584 6.43005 6.47737 6.57866 6.73372 6.77488 6.82416 6.84837 7.00154 7.08692 7.85820 8.05994 8.15226 8.29441 8.68818 8.84084 9.54977 10.05162 10.90828 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003974 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.355028 B = 7043.566012 C = 8329.041813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.056 3.944 3 Si 0.818 3.182 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.279 4.279 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.144 3.856 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.155 3.845 15 H 0.034 0.966 16 C 0.135 3.865 17 N -0.679 5.679 18 C 0.555 3.445 19 O -0.553 6.553 20 C -0.090 4.090 21 C -0.075 4.075 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.031 4.031 25 C -0.166 4.166 26 C 0.072 3.928 27 N -0.496 5.496 28 C 0.148 3.852 29 C -0.078 4.078 30 H 0.264 0.736 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.408 0.592 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.149 0.851 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 1.874 -7.135 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.148 4.148 3 Si 0.644 3.356 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.407 4.407 8 H 0.097 0.903 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.177 4.177 12 C -0.146 4.146 13 C -0.167 4.167 14 C 0.049 3.951 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.328 5.328 18 C 0.342 3.658 19 O -0.435 6.435 20 C -0.095 4.095 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.036 4.036 25 C -0.185 4.185 26 C -0.071 4.071 27 N -0.204 5.204 28 C -0.021 4.021 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.246 0.754 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.161 0.301 -7.726 10.539 hybrid contribution 0.081 2.738 0.481 2.781 sum 7.242 3.039 -7.245 10.685 Atomic orbital electron populations 1.70101 1.06400 1.27089 1.46741 1.25567 0.94613 0.97206 0.97439 0.87751 0.82362 0.86945 0.78532 1.21043 1.21978 1.18166 1.18658 0.95939 0.95995 1.30096 0.90328 1.44334 1.10788 1.62438 1.14609 1.21291 0.99237 0.92938 0.84663 1.22047 0.97376 1.00084 0.98215 1.21363 0.97703 0.99027 0.96485 1.21834 1.00366 0.98561 0.95904 1.20780 0.90732 0.92729 0.90837 0.94870 1.21340 0.99012 0.90830 0.87672 1.45841 1.62695 1.11924 1.12356 1.17941 0.78015 0.87702 0.82102 1.90497 1.57050 1.18179 1.77749 1.19974 1.02214 0.93960 0.93389 1.21685 0.95563 0.91938 1.00186 1.20929 0.97810 1.00041 0.93203 1.21081 0.99198 0.94691 0.96519 1.18139 0.97982 0.93647 0.93877 1.21815 1.03106 0.98002 0.95614 1.22250 0.96292 0.89508 0.99052 1.67667 1.11530 1.37698 1.03501 1.24652 0.90297 0.95360 0.91805 1.18863 1.00651 0.95442 0.93164 0.92555 0.95889 0.91580 0.93205 0.91946 0.92847 0.93173 0.92612 0.91614 0.92062 0.90771 0.75362 0.84564 0.85088 0.84973 0.84749 0.83405 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 13.97 55.49 0.78 -23.13 16 2 C 0.06 1.40 4.80 -17.43 -0.08 1.32 16 3 Si 0.82 18.26 27.03 -169.99 -4.59 13.67 16 4 H -0.28 -5.94 6.22 56.52 0.35 -5.59 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -5.57 5.30 56.52 0.30 -5.27 16 7 C -0.28 -6.72 6.76 -15.06 -0.10 -6.82 16 8 H 0.08 2.14 6.57 -52.49 -0.34 1.79 16 9 N -0.60 -12.30 2.47 -165.02 -0.41 -12.71 16 10 C 0.14 2.82 4.61 -3.71 -0.02 2.80 16 11 C -0.14 -2.24 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -1.55 5.88 -26.69 -0.16 -1.71 16 13 C -0.13 -1.90 5.35 -26.83 -0.14 -2.05 16 14 C 0.16 2.70 2.99 -67.82 -0.20 2.49 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C 0.14 2.39 4.45 -4.04 -0.02 2.37 16 17 N -0.68 -12.61 3.96 -61.33 -0.24 -12.85 16 18 C 0.56 10.62 7.73 -12.46 -0.10 10.53 16 19 O -0.55 -11.33 13.48 5.29 0.07 -11.26 16 20 C -0.09 -1.61 5.90 -104.66 -0.62 -2.22 16 21 C -0.07 -1.24 9.51 -39.12 -0.37 -1.61 16 22 C -0.10 -1.40 9.93 -39.98 -0.40 -1.80 16 23 C -0.10 -1.24 9.79 -39.47 -0.39 -1.62 16 24 C -0.03 -0.46 5.74 -106.84 -0.61 -1.07 16 25 C -0.17 -2.07 9.88 -39.36 -0.39 -2.46 16 26 C 0.07 0.97 11.07 -17.97 -0.20 0.77 16 27 N -0.50 -8.13 10.30 -13.21 -0.14 -8.26 16 28 C 0.15 2.59 10.49 -17.06 -0.18 2.41 16 29 C -0.08 -1.34 5.76 -106.59 -0.61 -1.95 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.45 6.74 -51.92 -0.35 0.10 16 32 H 0.07 1.43 6.99 -51.93 -0.36 1.06 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.47 7.40 -51.93 -0.38 1.09 16 41 H 0.41 7.69 5.46 -40.82 -0.22 7.46 16 42 H 0.14 2.37 5.16 -52.49 -0.27 2.10 16 43 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 46 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 47 H 0.20 3.68 4.98 -52.49 -0.26 3.42 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -28.58 365.54 -10.33 -38.91 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.56 Total: 13.16 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.75 Total: -3.03 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.01 Total: -56.95 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.59 Total: 13.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.58 -10.33 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024736993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.996 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds