Wall clock time and date at job start Tue Mar 31 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48490 * 109.47655 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.46704 * 120.00595 * 3 2 1 6 6 H 1.48505 * 109.47294 * 239.99943 * 3 2 1 7 7 C 1.38805 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00071 * 194.02269 * 7 2 1 9 9 N 1.36942 * 119.99720 * 14.01179 * 7 2 1 10 10 C 1.46919 * 120.63088 * 31.07982 * 9 7 2 11 11 C 1.53196 * 108.77706 * 126.36605 * 10 9 7 12 12 C 1.53032 * 109.31478 * 54.63249 * 11 10 9 13 13 C 1.53043 * 109.53937 * 298.63800 * 12 11 10 14 14 C 1.46928 * 120.62732 * 210.79135 * 9 7 2 15 15 H 1.09006 * 109.58153 * 113.85128 * 14 9 7 16 16 C 1.52996 * 109.59024 * 353.42723 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.22257 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21545 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.47895 * 119.99653 * 180.02562 * 18 17 16 21 21 C 1.40593 * 119.73067 * 0.02562 * 20 18 17 22 22 C 1.35842 * 120.95354 * 179.97438 * 21 20 18 23 23 C 1.40497 * 119.87593 * 0.02562 * 22 21 20 24 24 C 1.40490 * 121.83363 * 180.02562 * 23 22 21 25 25 N 1.31214 * 119.93654 * 179.97438 * 24 23 22 26 26 C 1.32559 * 122.80464 * 0.02562 * 25 24 23 27 27 C 1.36219 * 121.84223 * 359.97438 * 26 25 24 28 28 C 1.40757 * 118.68349 * 0.02562 * 27 26 25 29 29 C 1.38528 * 119.72668 * 179.72766 * 20 18 17 30 30 H 0.97008 * 120.00261 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.58760 * 246.15092 * 10 9 7 32 32 H 1.09000 * 109.59008 * 6.43620 * 10 9 7 33 33 H 1.08996 * 109.49680 * 174.58992 * 11 10 9 34 34 H 1.09007 * 109.49628 * 294.68231 * 11 10 9 35 35 H 1.08999 * 109.46018 * 58.65481 * 12 11 10 36 36 H 1.08994 * 109.46553 * 178.63083 * 12 11 10 37 37 H 1.08999 * 109.49782 * 181.31185 * 13 12 11 38 38 H 1.08998 * 109.49660 * 301.37840 * 13 12 11 39 39 H 1.08998 * 109.46969 * 180.22803 * 16 14 9 40 40 H 1.08997 * 109.47304 * 300.22431 * 16 14 9 41 41 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 42 42 H 1.08009 * 119.52368 * 359.95479 * 21 20 18 43 43 H 1.07999 * 120.06585 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.03372 * 359.95335 * 24 23 22 45 45 H 1.07996 * 119.07567 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.65790 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.36438 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0661 -1.2161 0.2261 9 7 1.3561 -2.3702 -0.2882 10 6 0.2116 -2.3800 -1.2094 11 6 0.4709 -3.4169 -2.3069 12 6 0.7704 -4.7722 -1.6623 13 6 2.0275 -4.6605 -0.7965 14 6 1.7894 -3.6386 0.3137 15 1 1.0147 -4.0074 0.9860 16 6 3.0874 -3.4194 1.0934 17 7 2.8596 -2.4349 2.1541 18 6 3.8692 -2.0824 2.9745 19 8 4.9687 -2.5809 2.8340 20 6 3.6390 -1.0890 4.0457 21 6 2.3647 -0.5163 4.2034 22 6 2.1255 0.3981 5.1791 23 6 3.1614 0.7827 6.0469 24 6 2.9597 1.7240 7.0701 25 7 3.9536 2.0558 7.8599 26 6 5.1684 1.5386 7.7416 27 6 5.4675 0.6186 6.7825 28 6 4.4523 0.2120 5.8964 29 6 4.6792 -0.7349 4.8893 30 1 -0.4851 0.8401 0.0004 31 1 -0.6943 -2.6441 -0.6640 32 1 0.0942 -1.3930 -1.6568 33 1 -0.4109 -3.5029 -2.9418 34 1 1.3240 -3.1040 -2.9090 35 1 -0.0730 -5.0729 -1.0407 36 1 0.9313 -5.5173 -2.4413 37 1 2.2534 -5.6317 -0.3563 38 1 2.8660 -4.3364 -1.4128 39 1 3.4092 -4.3622 1.5357 40 1 3.8598 -3.0529 0.4174 41 1 1.9819 -2.0373 2.2665 42 1 1.5645 -0.8073 3.5390 43 1 1.1412 0.8292 5.2871 44 1 1.9875 2.1744 7.2064 45 1 5.9425 1.8555 8.4246 46 1 6.4641 0.2099 6.7031 47 1 5.6558 -1.1800 4.7683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024744908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:34 Heat of formation + Delta-G solvation = 35.977166 kcal Electronic energy + Delta-G solvation = -29554.267205 eV Core-core repulsion = 25702.059520 eV Total energy + Delta-G solvation = -3852.207684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87618 -39.39813 -37.89201 -36.80097 -34.34050 -33.15149 -33.01572 -31.67260 -30.48100 -29.97025 -29.62003 -26.37490 -25.24995 -24.00702 -23.76108 -22.28556 -22.17376 -20.85704 -20.40029 -19.20452 -18.12131 -17.61738 -16.73985 -16.44283 -15.89557 -15.67124 -15.28150 -14.95069 -14.54774 -14.21828 -14.09414 -13.83177 -13.71160 -13.64750 -13.52527 -13.42821 -12.91762 -12.74995 -12.52454 -12.35728 -12.07909 -12.06263 -11.71113 -11.27755 -11.06337 -11.00019 -10.83192 -10.61272 -10.35291 -10.28131 -10.20180 -10.05392 -9.75783 -9.60593 -9.51540 -9.34981 -9.08770 -8.65800 -8.32422 -8.10348 -6.73695 -5.91932 -3.38309 0.21230 0.70987 1.83674 2.67012 3.29267 3.35164 3.39757 3.55764 3.68519 4.12210 4.30621 4.36776 4.49212 4.70662 4.73674 4.95873 5.03653 5.15158 5.20494 5.25441 5.26346 5.44427 5.50593 5.58582 5.63547 5.65770 5.71058 5.90513 5.92262 5.97997 6.05051 6.09297 6.21586 6.31287 6.35353 6.35501 6.38297 6.53978 6.54443 6.65354 6.68333 6.74142 6.80258 6.90834 7.05974 7.32204 7.58914 7.71549 7.85736 8.12097 8.32939 8.70136 9.08847 9.70207 10.28356 11.14525 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.003506 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.259853 B = 7985.354079 C = 9057.833619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.012 3.988 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.683 5.683 18 C 0.546 3.454 19 O -0.558 6.558 20 C -0.098 4.098 21 C -0.082 4.082 22 C -0.095 4.095 23 C -0.098 4.098 24 C 0.143 3.857 25 N -0.489 5.489 26 C 0.066 3.934 27 C -0.145 4.145 28 C -0.036 4.036 29 C -0.055 4.055 30 H 0.255 0.745 31 H 0.019 0.981 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -2.660 8.870 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.009 3.991 17 N -0.334 5.334 18 C 0.333 3.667 19 O -0.439 6.439 20 C -0.102 4.102 21 C -0.101 4.101 22 C -0.114 4.114 23 C -0.101 4.101 24 C -0.028 4.028 25 N -0.197 5.197 26 C -0.077 4.077 27 C -0.164 4.164 28 C -0.041 4.041 29 C -0.074 4.074 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.255 0.745 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.181 0.819 45 H 0.169 0.831 46 H 0.157 0.843 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.583 -2.273 9.461 10.369 hybrid contribution 0.152 0.567 -0.898 1.073 sum 3.736 -1.706 8.563 9.497 Atomic orbital electron populations 1.69993 1.05070 1.25688 1.53364 1.25020 0.95141 0.97952 1.00617 0.86595 0.79225 0.83881 0.78599 1.21510 1.20581 1.20992 1.19157 0.92010 0.84065 1.43155 0.91349 1.44061 1.35788 1.01888 1.49515 1.20762 0.88442 0.97527 0.88489 1.22194 0.99991 0.96568 0.99623 1.21358 0.97530 0.97393 0.98211 1.21870 0.98282 0.98248 0.98353 1.20646 0.93111 0.88581 0.92318 0.95024 1.21350 0.98509 0.90475 0.88724 1.45972 1.14008 1.42672 1.30755 1.18164 0.84767 0.81931 0.81877 1.90711 1.24101 1.56101 1.73036 1.20186 0.94490 0.98565 0.96959 1.21220 0.96412 0.95321 0.97104 1.20900 0.98653 0.97366 0.94517 1.19161 0.94140 0.98699 0.98060 1.23232 0.97980 0.92381 0.89250 1.67368 1.00577 1.25314 1.26438 1.22123 0.93805 0.94504 0.97278 1.21958 0.99615 0.98977 0.95878 1.18122 0.93325 0.96576 0.96051 1.21377 0.99394 0.94466 0.92140 0.93472 0.96329 0.89725 0.93513 0.92837 0.92854 0.93684 0.92956 0.92069 0.92389 0.91345 0.74522 0.84112 0.84313 0.81865 0.83101 0.84347 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.20 11.23 55.49 0.62 -22.58 16 2 C 0.01 0.31 4.97 -17.43 -0.09 0.22 16 3 Si 0.89 20.61 29.58 -169.99 -5.03 15.58 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.09 6.98 -15.06 -0.11 -6.20 16 8 H 0.07 1.70 5.84 -52.49 -0.31 1.40 16 9 N -0.59 -12.86 2.98 -165.03 -0.49 -13.35 16 10 C 0.17 3.75 5.27 -3.71 -0.02 3.73 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.69 5.89 -26.69 -0.16 -1.85 16 13 C -0.13 -2.06 5.35 -26.83 -0.14 -2.20 16 14 C 0.16 2.96 2.99 -67.82 -0.20 2.75 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.42 4.42 -4.04 -0.02 2.41 16 17 N -0.68 -12.67 3.79 -61.24 -0.23 -12.90 16 18 C 0.55 10.28 7.77 -12.30 -0.10 10.18 16 19 O -0.56 -11.73 16.30 5.33 0.09 -11.65 16 20 C -0.10 -1.62 5.87 -104.95 -0.62 -2.24 16 21 C -0.08 -1.25 9.44 -39.55 -0.37 -1.63 16 22 C -0.09 -1.25 9.77 -39.59 -0.39 -1.64 16 23 C -0.10 -1.32 5.75 -106.78 -0.61 -1.94 16 24 C 0.14 1.72 11.04 -16.97 -0.19 1.53 16 25 N -0.49 -6.26 10.29 -13.14 -0.14 -6.40 16 26 C 0.07 0.74 11.07 -17.96 -0.20 0.55 16 27 C -0.14 -1.68 9.88 -39.36 -0.39 -2.06 16 28 C -0.04 -0.49 5.74 -106.83 -0.61 -1.11 16 29 C -0.05 -0.82 9.38 -38.78 -0.36 -1.19 16 30 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 2.08 6.19 -51.93 -0.32 1.76 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.37 7.42 -51.93 -0.39 0.98 16 41 H 0.42 7.85 5.37 -40.82 -0.22 7.64 16 42 H 0.14 2.19 6.34 -52.48 -0.33 1.86 16 43 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 46 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 47 H 0.14 2.06 7.62 -52.48 -0.40 1.66 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -28.71 375.74 -10.84 -39.55 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.60 Total: 9.50 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.73 Total: -3.42 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.24 Total: -55.23 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.71 -10.84 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024744908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.531 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds