Wall clock time and date at job start Tue Mar 31 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99529 * 2 1 4 4 H 1.48501 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47196 * 300.00082 * 3 2 1 6 6 H 1.48500 * 109.47430 * 60.00099 * 3 2 1 7 7 C 1.38805 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00109 * 165.34518 * 7 2 1 9 9 N 1.36941 * 119.99865 * 345.35131 * 7 2 1 10 10 C 1.46928 * 120.63072 * 328.35951 * 9 7 2 11 11 C 1.53191 * 108.77773 * 233.58916 * 10 9 7 12 12 C 1.53046 * 109.31074 * 305.36946 * 11 10 9 13 13 C 1.53028 * 109.54127 * 61.36043 * 12 11 10 14 14 C 1.46921 * 120.63241 * 148.33929 * 9 7 2 15 15 H 1.08998 * 109.70889 * 246.26920 * 14 9 7 16 16 C 1.53008 * 109.58582 * 6.62508 * 14 9 7 17 17 N 1.46497 * 109.46901 * 299.19137 * 16 14 9 18 18 C 1.34773 * 119.99820 * 179.97438 * 17 16 14 19 19 O 1.21552 * 120.00267 * 0.02562 * 18 17 16 20 20 C 1.47889 * 119.99893 * 180.02562 * 18 17 16 21 21 C 1.40594 * 119.73262 * 359.97438 * 20 18 17 22 22 C 1.35852 * 120.95764 * 179.97438 * 21 20 18 23 23 C 1.40494 * 119.87736 * 0.02643 * 22 21 20 24 24 C 1.40483 * 121.84500 * 179.97438 * 23 22 21 25 25 N 1.31217 * 119.94403 * 180.02562 * 24 23 22 26 26 C 1.32559 * 122.79987 * 0.02562 * 25 24 23 27 27 C 1.36223 * 121.84765 * 359.97438 * 26 25 24 28 28 C 1.40760 * 118.67637 * 0.02562 * 27 26 25 29 29 C 1.38532 * 119.72803 * 180.02562 * 20 18 17 30 30 H 0.96994 * 120.00249 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58749 * 113.79830 * 10 9 7 32 32 H 1.08998 * 109.69915 * 353.44504 * 10 9 7 33 33 H 1.08990 * 109.49949 * 185.41096 * 11 10 9 34 34 H 1.09002 * 109.49363 * 65.31295 * 11 10 9 35 35 H 1.09007 * 109.45524 * 301.33854 * 12 11 10 36 36 H 1.08998 * 109.44408 * 181.38141 * 12 11 10 37 37 H 1.08999 * 109.49676 * 178.68405 * 13 12 11 38 38 H 1.09008 * 109.52604 * 58.60413 * 13 12 11 39 39 H 1.08994 * 109.47142 * 179.19438 * 16 14 9 40 40 H 1.08998 * 109.46853 * 59.19096 * 16 14 9 41 41 H 0.96996 * 120.00018 * 0.02562 * 17 16 14 42 42 H 1.07999 * 119.52303 * 0.02562 * 21 20 18 43 43 H 1.08000 * 120.06156 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.02902 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.07605 * 179.71787 * 26 25 24 46 46 H 1.07999 * 120.66139 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.36825 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0640 -1.2173 -0.2361 9 7 1.3591 -2.3686 0.3010 10 6 0.2313 -2.3752 1.2427 11 6 0.5076 -3.4125 2.3356 12 6 0.7920 -4.7687 1.6860 13 6 2.0335 -4.6605 0.7978 14 6 1.7745 -3.6373 -0.3125 15 1 0.9859 -4.0033 -0.9699 16 6 3.0561 -3.4212 -1.1200 17 7 2.8050 -2.4442 -2.1824 18 6 3.7972 -2.0948 -3.0248 19 8 4.9004 -2.5905 -2.9034 20 6 3.5439 -1.1081 -4.0969 21 6 2.2656 -0.5386 -4.2325 22 6 2.0055 0.3704 -5.2080 23 6 3.0230 0.7518 -6.0986 24 6 2.7996 1.6874 -7.1225 25 7 3.7770 2.0163 -7.9339 26 6 4.9943 1.5003 -7.8379 27 6 5.3139 0.5857 -6.8804 28 6 4.3172 0.1825 -5.9719 29 6 4.5678 -0.7534 -4.9600 30 1 -0.4850 0.8400 0.0004 31 1 -0.6850 -2.6370 0.7136 32 1 0.1236 -1.3889 1.6939 33 1 -0.3628 -3.4961 2.9862 34 1 1.3722 -3.1015 2.9220 35 1 -0.0633 -5.0675 1.0798 36 1 0.9648 -5.5139 2.4624 37 1 2.2491 -5.6323 0.3539 38 1 2.8842 -4.3380 1.3984 39 1 3.3705 -4.3663 -1.5625 40 1 3.8415 -3.0489 -0.4622 41 1 1.9248 -2.0483 -2.2790 42 1 1.4793 -0.8273 -3.5508 43 1 1.0182 0.7984 -5.2993 44 1 1.8243 2.1357 -7.2417 45 1 5.7529 1.8108 -8.5412 46 1 6.3119 0.1774 -6.8200 47 1 5.5485 -1.1929 -4.8535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024744909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:38 Heat of formation + Delta-G solvation = 35.114624 kcal Electronic energy + Delta-G solvation = -29541.722521 eV Core-core repulsion = 25689.477434 eV Total energy + Delta-G solvation = -3852.245087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.87893 -39.39310 -37.87743 -36.80260 -34.33927 -33.14452 -33.01708 -31.67388 -30.48072 -29.97117 -29.62230 -26.37728 -25.24651 -24.01217 -23.76437 -22.28611 -22.17731 -20.85474 -20.40295 -19.21255 -18.12036 -17.62004 -16.74116 -16.44287 -15.90101 -15.66105 -15.28218 -14.95253 -14.55792 -14.21614 -14.09115 -13.83103 -13.71544 -13.64987 -13.52815 -13.43269 -12.92291 -12.75350 -12.52451 -12.36022 -12.07462 -12.07018 -11.70576 -11.27451 -11.06582 -11.02350 -10.83789 -10.61184 -10.33922 -10.28397 -10.19951 -10.05683 -9.75724 -9.60982 -9.51378 -9.34120 -9.09420 -8.66430 -8.33273 -8.10698 -6.73340 -5.92512 -3.39237 0.20847 0.70475 1.83299 2.66673 3.26436 3.37031 3.41113 3.55533 3.68281 4.11803 4.30416 4.36631 4.48934 4.70363 4.73352 4.95545 5.03222 5.15170 5.20182 5.24928 5.26032 5.44764 5.50412 5.58468 5.62926 5.65411 5.70854 5.90489 5.91984 5.98291 6.04843 6.08971 6.21143 6.31099 6.35049 6.35434 6.38020 6.53716 6.54282 6.65091 6.67944 6.73678 6.79780 6.90757 7.05967 7.31043 7.57047 7.72386 7.85511 8.11863 8.32819 8.70009 9.08483 9.69700 10.28365 11.13872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003500 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.753264 B = 7999.176234 C = 9065.381282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.684 5.684 18 C 0.546 3.454 19 O -0.558 6.558 20 C -0.098 4.098 21 C -0.083 4.083 22 C -0.094 4.094 23 C -0.098 4.098 24 C 0.143 3.857 25 N -0.489 5.489 26 C 0.066 3.934 27 C -0.145 4.145 28 C -0.036 4.036 29 C -0.054 4.054 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.415 0.585 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -2.753 -8.899 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.334 5.334 18 C 0.333 3.667 19 O -0.439 6.439 20 C -0.102 4.102 21 C -0.101 4.101 22 C -0.114 4.114 23 C -0.101 4.101 24 C -0.028 4.028 25 N -0.197 5.197 26 C -0.077 4.077 27 C -0.164 4.164 28 C -0.041 4.041 29 C -0.074 4.074 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.181 0.819 45 H 0.169 0.831 46 H 0.157 0.843 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.398 -2.375 -9.502 10.367 hybrid contribution 0.130 0.587 0.894 1.077 sum 3.528 -1.789 -8.609 9.474 Atomic orbital electron populations 1.70017 1.05080 1.25488 1.53426 1.25035 0.95122 0.97988 1.00570 0.86475 0.79868 0.84564 0.77596 1.20205 1.21399 1.21440 1.19224 0.92180 0.84106 1.42751 0.91305 1.44078 1.37340 1.02025 1.47796 1.20733 0.88700 0.97393 0.88299 1.22193 1.00065 0.96567 0.99538 1.21359 0.97637 0.97374 0.98124 1.21937 0.98331 0.98220 0.98221 1.20738 0.93267 0.88580 0.92103 0.95005 1.21348 0.98547 0.90601 0.88554 1.45951 1.14460 1.43093 1.29898 1.18160 0.84800 0.81887 0.81891 1.90714 1.23497 1.56002 1.73701 1.20189 0.94507 0.98611 0.96941 1.21223 0.96263 0.95347 0.97303 1.20905 0.98785 0.97349 0.94325 1.19162 0.94186 0.98713 0.98005 1.23234 0.98094 0.92388 0.89114 1.67374 1.00893 1.25146 1.26275 1.22127 0.93634 0.94519 0.97416 1.21959 0.99733 0.98956 0.95781 1.18128 0.93339 0.96638 0.95968 1.21381 0.99464 0.94491 0.92017 0.93583 0.96297 0.89961 0.93508 0.92814 0.92856 0.93680 0.92991 0.92045 0.92398 0.91318 0.74570 0.84109 0.84324 0.81869 0.83100 0.84342 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.18 11.32 55.49 0.63 -22.55 16 2 C 0.01 0.31 4.95 -17.43 -0.09 0.23 16 3 Si 0.89 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.07 6.98 -15.06 -0.11 -6.17 16 8 H 0.07 1.73 5.90 -52.49 -0.31 1.42 16 9 N -0.59 -12.85 2.97 -164.78 -0.49 -13.34 16 10 C 0.17 3.77 5.26 -3.71 -0.02 3.75 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.69 5.88 -26.69 -0.16 -1.84 16 13 C -0.13 -2.05 5.37 -26.62 -0.14 -2.19 16 14 C 0.16 2.95 3.00 -67.60 -0.20 2.75 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.43 4.43 -4.04 -0.02 2.41 16 17 N -0.68 -12.65 3.83 -61.24 -0.23 -12.88 16 18 C 0.55 10.24 7.77 -12.31 -0.10 10.15 16 19 O -0.56 -11.72 16.30 5.32 0.09 -11.63 16 20 C -0.10 -1.62 5.87 -104.95 -0.62 -2.23 16 21 C -0.08 -1.26 9.44 -39.55 -0.37 -1.63 16 22 C -0.09 -1.24 9.77 -39.59 -0.39 -1.63 16 23 C -0.10 -1.32 5.75 -106.78 -0.61 -1.93 16 24 C 0.14 1.72 11.04 -16.97 -0.19 1.53 16 25 N -0.49 -6.25 10.29 -13.14 -0.14 -6.39 16 26 C 0.07 0.74 11.07 -17.96 -0.20 0.54 16 27 C -0.14 -1.67 9.88 -39.35 -0.39 -2.05 16 28 C -0.04 -0.49 5.74 -106.83 -0.61 -1.10 16 29 C -0.05 -0.81 9.38 -38.78 -0.36 -1.18 16 30 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 2.02 6.27 -51.93 -0.33 1.70 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 41 H 0.42 7.83 5.42 -40.82 -0.22 7.61 16 42 H 0.14 2.18 6.34 -52.49 -0.33 1.85 16 43 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 47 H 0.14 2.05 7.62 -52.49 -0.40 1.65 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -28.73 376.02 -10.84 -39.57 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.60 Total: 9.30 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.73 Total: -3.35 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.23 Total: -55.16 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.73 -10.84 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024744909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.689 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds