Wall clock time and date at job start Tue Mar 31 2020 22:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46657 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46800 * 299.99740 * 3 2 1 6 6 H 1.48497 * 109.47067 * 60.00222 * 3 2 1 7 7 C 1.38814 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00126 * 190.27204 * 7 2 1 9 9 N 1.36939 * 119.99693 * 10.27403 * 7 2 1 10 10 C 1.46926 * 120.63373 * 32.64267 * 9 7 2 11 11 C 1.53187 * 108.77702 * 126.36788 * 10 9 7 12 12 C 1.53039 * 109.31396 * 54.63366 * 11 10 9 13 13 C 1.53042 * 109.53906 * 298.63402 * 12 11 10 14 14 C 1.46935 * 120.62870 * 212.36066 * 9 7 2 15 15 H 1.08989 * 109.58552 * 113.84360 * 14 9 7 16 16 C 1.52998 * 109.58287 * 353.41799 * 14 9 7 17 17 N 1.46495 * 109.47395 * 60.11528 * 16 14 9 18 18 C 1.34775 * 120.00264 * 179.97438 * 17 16 14 19 19 O 1.21498 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.48278 * 120.00074 * 179.97438 * 18 17 16 21 21 C 1.40280 * 119.24290 * 179.73309 * 20 18 17 22 22 C 1.36498 * 119.81817 * 179.69903 * 21 20 18 23 23 C 1.40756 * 118.24780 * 0.57687 * 22 21 20 24 24 C 1.40412 * 121.29039 * 179.69194 * 23 22 21 25 25 C 1.36130 * 119.65371 * 179.97438 * 24 23 22 26 26 C 1.39435 * 120.91565 * 0.04089 * 25 24 23 27 27 C 1.35997 * 121.08527 * 359.95427 * 26 25 24 28 28 C 1.40828 * 119.73245 * 0.02562 * 27 26 25 29 29 N 1.31876 * 119.24119 * 0.02562 * 20 18 17 30 30 H 0.97000 * 119.99266 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58293 * 246.15513 * 10 9 7 32 32 H 1.09003 * 109.58310 * 6.43453 * 10 9 7 33 33 H 1.08997 * 109.50138 * 174.58818 * 11 10 9 34 34 H 1.09002 * 109.49661 * 294.68475 * 11 10 9 35 35 H 1.09001 * 109.46030 * 58.65440 * 12 11 10 36 36 H 1.09001 * 109.46002 * 178.62923 * 12 11 10 37 37 H 1.09004 * 109.49554 * 181.31474 * 13 12 11 38 38 H 1.08993 * 109.49817 * 301.41279 * 13 12 11 39 39 H 1.09005 * 109.46834 * 180.11171 * 16 14 9 40 40 H 1.08998 * 109.47292 * 300.10971 * 16 14 9 41 41 H 0.97006 * 120.00021 * 359.97438 * 17 16 14 42 42 H 1.08007 * 120.08535 * 359.97438 * 21 20 18 43 43 H 1.08003 * 120.87843 * 180.26462 * 22 21 20 44 44 H 1.08006 * 120.17323 * 359.97438 * 24 23 22 45 45 H 1.07997 * 119.54356 * 180.02562 * 25 24 23 46 46 H 1.08003 * 119.45628 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.13542 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0773 -1.2096 0.1673 9 7 1.3420 -2.3786 -0.2105 10 6 0.1675 -2.4248 -1.0920 11 6 0.3857 -3.5132 -2.1476 12 6 0.7007 -4.8386 -1.4504 13 6 1.9863 -4.6940 -0.6329 14 6 1.7896 -3.6201 0.4356 15 1 1.0362 -3.9526 1.1495 16 6 3.1138 -3.3722 1.1608 17 7 2.9262 -2.3362 2.1794 18 6 3.9641 -1.9512 2.9482 19 8 5.0555 -2.4631 2.7962 20 6 3.7744 -0.9021 3.9787 21 6 4.8642 -0.5176 4.7739 22 6 4.7043 0.4513 5.7220 23 6 3.4297 1.0282 5.8765 24 6 3.1920 2.0252 6.8362 25 6 1.9462 2.5606 6.9568 26 6 0.9002 2.1322 6.1403 27 6 1.0928 1.1689 5.1999 28 6 2.3672 0.5903 5.0436 29 7 2.5836 -0.3562 4.1306 30 1 -0.4849 0.8401 0.0004 31 1 -0.7209 -2.6578 -0.5050 32 1 0.0394 -1.4590 -1.5808 33 1 -0.5171 -3.6237 -2.7483 34 1 1.2196 -3.2336 -2.7914 35 1 -0.1228 -5.1052 -0.7880 36 1 0.8324 -5.6202 -2.1987 37 1 2.2227 -5.6450 -0.1554 38 1 2.8051 -4.4033 -1.2909 39 1 3.4450 -4.2948 1.6377 40 1 3.8654 -3.0442 0.4429 41 1 2.0550 -1.9271 2.3005 42 1 5.8283 -0.9839 4.6333 43 1 5.5326 0.7635 6.3407 44 1 3.9933 2.3655 7.4754 45 1 1.7654 3.3277 7.6952 46 1 -0.0789 2.5729 6.2565 47 1 0.2717 0.8483 4.5760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024775458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:23 Heat of formation + Delta-G solvation = 39.994881 kcal Electronic energy + Delta-G solvation = -29873.868579 eV Core-core repulsion = 26021.835116 eV Total energy + Delta-G solvation = -3852.033463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85264 -39.12705 -37.75722 -36.68252 -34.25729 -33.44884 -33.02041 -31.06509 -30.38534 -29.93729 -29.80246 -26.28189 -25.21702 -24.22636 -23.42681 -22.10880 -22.06776 -20.84896 -20.19345 -19.10990 -18.11852 -17.59992 -17.14260 -16.30392 -15.62540 -15.30117 -15.10633 -14.70471 -14.49234 -14.32752 -14.07735 -13.97328 -13.63885 -13.50981 -13.34566 -13.07987 -13.02586 -12.77674 -12.39971 -11.99443 -11.85549 -11.64344 -11.51615 -11.49884 -11.17361 -10.90740 -10.75597 -10.55834 -10.52391 -10.24897 -10.10436 -9.95416 -9.91254 -9.50990 -9.38902 -9.16552 -8.77386 -8.54004 -8.29732 -8.15250 -6.58424 -5.79464 -3.26971 0.29606 0.73344 1.99858 2.61563 3.35084 3.44025 3.46909 3.52859 3.68045 4.26246 4.29323 4.47735 4.55625 4.78180 4.80622 4.97193 5.13323 5.21384 5.27701 5.37732 5.38091 5.48382 5.54800 5.66805 5.71876 5.79378 5.93328 5.99235 6.00816 6.06779 6.10069 6.17416 6.30184 6.35376 6.38545 6.39071 6.43752 6.51975 6.61970 6.74156 6.76308 6.82053 6.89072 7.00618 7.16817 7.42569 7.70881 7.83547 7.84174 8.31993 8.46614 8.82290 9.21962 9.82094 10.40402 11.27605 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.004086 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.598922 B = 6851.031235 C = 7898.240081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.017 3.983 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.131 3.869 17 N -0.666 5.666 18 C 0.557 3.443 19 O -0.557 6.557 20 C 0.124 3.876 21 C -0.125 4.125 22 C -0.071 4.071 23 C -0.092 4.092 24 C -0.106 4.106 25 C -0.110 4.110 26 C -0.113 4.113 27 C -0.075 4.075 28 C 0.125 3.875 29 N -0.425 5.425 30 H 0.252 0.748 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.427 0.573 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 0.107 11.177 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.316 5.316 18 C 0.340 3.660 19 O -0.437 6.437 20 C -0.030 4.030 21 C -0.145 4.145 22 C -0.097 4.097 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.093 4.093 28 C 0.001 3.999 29 N -0.136 5.136 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.267 0.733 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.148 0.852 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.721 -0.350 10.539 10.890 hybrid contribution 0.675 1.540 0.440 1.738 sum 3.395 1.190 10.979 11.554 Atomic orbital electron populations 1.69981 1.05041 1.25180 1.53846 1.25026 0.95149 0.97817 1.00221 0.86427 0.79691 0.84796 0.77284 1.20392 1.21639 1.21520 1.19152 0.91033 0.83480 1.44162 0.91516 1.44053 1.33029 1.03209 1.50941 1.20767 0.88077 0.96881 0.89426 1.22204 0.99798 0.96847 0.99536 1.21359 0.97394 0.97401 0.98320 1.21869 0.98102 0.98091 0.98641 1.20643 0.92903 0.88753 0.92375 0.95039 1.21393 0.98567 0.89471 0.89851 1.45958 1.13825 1.38591 1.33245 1.17853 0.84806 0.81969 0.81335 1.90709 1.25299 1.56920 1.70769 1.21529 0.89538 0.96040 0.95936 1.21760 1.00452 0.97289 0.95016 1.21384 0.96052 0.94938 0.97308 1.18985 0.94525 0.98123 0.97745 1.20928 0.97672 0.96173 0.97720 1.20950 0.92996 0.99640 0.99202 1.20906 0.99561 0.97159 0.95644 1.21036 0.95612 0.95212 0.97452 1.18919 0.94019 0.94307 0.92615 1.67978 1.22444 1.07070 1.16148 0.93753 0.96418 0.89586 0.93587 0.92876 0.92881 0.93755 0.93000 0.92086 0.92348 0.91294 0.73320 0.83344 0.83998 0.85333 0.85640 0.85229 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 11.12 55.49 0.62 -24.05 16 2 C 0.02 0.47 5.05 -17.43 -0.09 0.38 16 3 Si 0.89 22.07 29.57 -169.99 -5.03 17.04 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.25 -6.38 6.91 -15.06 -0.10 -6.48 16 8 H 0.07 1.78 5.91 -52.49 -0.31 1.47 16 9 N -0.59 -13.71 2.98 -165.03 -0.49 -14.20 16 10 C 0.17 3.97 5.25 -3.71 -0.02 3.95 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 12 C -0.11 -1.77 5.89 -26.69 -0.16 -1.93 16 13 C -0.13 -2.16 5.35 -26.83 -0.14 -2.30 16 14 C 0.16 3.17 3.00 -67.82 -0.20 2.96 16 15 H 0.03 0.65 8.14 -51.94 -0.42 0.22 16 16 C 0.13 2.55 4.42 -4.05 -0.02 2.54 16 17 N -0.67 -13.79 3.85 -61.11 -0.24 -14.03 16 18 C 0.56 11.39 7.81 -12.13 -0.09 11.30 16 19 O -0.56 -12.08 16.28 5.37 0.09 -11.99 16 20 C 0.12 2.32 6.75 -82.95 -0.56 1.76 16 21 C -0.12 -1.91 9.54 -39.44 -0.38 -2.29 16 22 C -0.07 -0.91 9.88 -39.26 -0.39 -1.30 16 23 C -0.09 -1.30 5.75 -106.71 -0.61 -1.91 16 24 C -0.11 -1.17 9.77 -39.52 -0.39 -1.56 16 25 C -0.11 -1.14 9.96 -39.89 -0.40 -1.54 16 26 C -0.11 -1.33 9.94 -39.94 -0.40 -1.73 16 27 C -0.07 -1.13 9.99 -39.41 -0.39 -1.52 16 28 C 0.12 2.12 6.61 -84.85 -0.56 1.56 16 29 N -0.43 -8.19 9.47 -7.54 -0.07 -8.26 16 30 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.22 6.18 -51.93 -0.32 1.90 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.45 7.42 -51.93 -0.39 1.06 16 41 H 0.43 9.51 6.68 -40.82 -0.27 9.23 16 42 H 0.15 2.08 7.60 -52.48 -0.40 1.68 16 43 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 47 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -30.14 378.19 -11.22 -41.36 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.74 Total: 9.41 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -5.06 Total: -0.99 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.18 Total: -60.54 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.14 -11.22 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024775458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.357 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds