Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99699 * 2 1 4 4 H 1.48507 * 109.47050 * 269.99961 * 3 2 1 5 5 H 1.48500 * 109.47519 * 29.99773 * 3 2 1 6 6 H 1.48494 * 109.47380 * 150.00038 * 3 2 1 7 7 C 1.38815 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99824 * 180.27894 * 9 7 2 11 11 H 1.09000 * 110.44241 * 34.02244 * 10 9 7 12 12 C 1.55940 * 110.48923 * 271.46697 * 10 9 7 13 13 C 1.56692 * 105.64806 * 233.84021 * 12 10 9 14 14 C 1.50991 * 101.58606 * 334.86240 * 13 12 10 15 15 H 1.08994 * 109.70656 * 290.85852 * 14 13 12 16 16 C 1.50348 * 125.57999 * 156.11719 * 14 13 12 17 17 N 1.49217 * 104.86005 * 215.66491 * 16 14 13 18 18 C 1.34776 * 126.05522 * 187.03265 * 17 16 14 19 19 O 1.21582 * 120.00020 * 174.56261 * 18 17 16 20 20 C 1.47651 * 120.00084 * 354.56011 * 18 17 16 21 21 C 1.40204 * 119.97394 * 325.88503 * 20 18 17 22 22 C 1.36320 * 120.66609 * 179.69387 * 21 20 18 23 23 C 1.39370 * 120.24025 * 0.59785 * 22 21 20 24 24 N 1.37398 * 133.25313 * 179.70658 * 23 22 21 25 25 H 0.97002 * 125.00489 * 359.97116 * 24 23 22 26 26 C 1.36857 * 109.98210 * 179.97438 * 24 23 22 27 27 C 1.34195 * 109.96164 * 359.97438 * 26 24 23 28 28 C 1.40878 * 119.63665 * 359.67946 * 23 22 21 29 29 C 1.39162 * 119.97257 * 146.15512 * 20 18 17 30 30 C 1.48963 * 107.55015 * 6.47890 * 17 16 14 31 31 C 1.50297 * 110.49300 * 156.58666 * 10 9 7 32 32 H 1.08993 * 109.99926 * 38.17215 * 31 10 9 33 33 H 0.97002 * 120.00587 * 0.02562 * 1 2 3 34 34 H 0.97003 * 120.00256 * 0.02562 * 9 7 2 35 35 H 1.09003 * 110.19223 * 352.86605 * 12 10 9 36 36 H 1.08998 * 110.18660 * 114.70778 * 12 10 9 37 37 H 1.08998 * 110.93344 * 216.82347 * 13 12 10 38 38 H 1.08997 * 111.11430 * 92.98527 * 13 12 10 39 39 H 1.09007 * 110.36059 * 334.50740 * 16 14 13 40 40 H 1.08997 * 110.36241 * 96.70284 * 16 14 13 41 41 H 1.07995 * 119.66823 * 359.97438 * 21 20 18 42 42 H 1.08002 * 119.88419 * 180.27601 * 22 21 20 43 43 H 1.08005 * 125.02020 * 180.02562 * 26 24 23 44 44 H 1.07997 * 126.54098 * 180.02562 * 27 26 24 45 45 H 1.07999 * 120.30219 * 0.02562 * 29 20 18 46 46 H 1.08998 * 110.94349 * 267.68436 * 30 17 16 47 47 H 1.09002 * 110.42258 * 144.30292 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0083 11 1 2.9794 -3.5614 0.5830 12 6 2.3691 -4.1153 -1.4493 13 6 1.8078 -5.5738 -1.5624 14 6 1.8414 -6.0243 -0.1216 15 1 2.8753 -6.1421 0.2025 16 6 0.9872 -7.1073 0.4765 17 7 0.6902 -6.6392 1.8619 18 6 0.0633 -7.3482 2.8214 19 8 -0.0348 -6.8956 3.9456 20 6 -0.5045 -8.6745 2.5075 21 6 -1.0481 -8.9212 1.2388 22 6 -1.5704 -10.1424 0.9318 23 6 -1.5814 -11.1605 1.8835 24 7 -2.0327 -12.4582 1.8687 25 1 -2.4526 -12.8927 1.1099 26 6 -1.8023 -13.0473 3.0823 27 6 -1.2068 -12.1745 3.9096 28 6 -1.0434 -10.9233 3.1637 29 6 -0.5048 -9.6768 3.4728 30 6 1.2242 -5.2547 1.9923 31 6 1.2003 -4.7567 0.5679 32 1 0.1704 -4.6329 0.2335 33 1 -0.4851 0.8400 -0.0004 34 1 0.3556 -2.3881 0.0016 35 1 1.8679 -3.4625 -2.1641 36 1 3.4450 -4.1096 -1.6240 37 1 2.4567 -6.1940 -2.1808 38 1 0.7882 -5.5734 -1.9478 39 1 0.0639 -7.2195 -0.0920 40 1 1.5331 -8.0504 0.5018 41 1 -1.0489 -8.1374 0.4960 42 1 -1.9818 -10.3200 -0.0509 43 1 -2.0609 -14.0647 3.3365 44 1 -0.9055 -12.3587 4.9302 45 1 -0.0915 -9.4896 4.4528 46 1 2.2418 -5.2648 2.3827 47 1 0.5711 -4.6531 2.6245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026344290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = 63.391594 kcal Electronic energy + Delta-G solvation = -28635.534523 eV Core-core repulsion = 24784.515617 eV Total energy + Delta-G solvation = -3851.018906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57453 -40.53773 -38.72590 -36.68021 -35.31586 -33.37186 -32.29736 -30.91538 -30.57861 -29.27275 -28.70242 -28.45052 -25.48236 -24.18366 -23.15418 -22.74861 -22.06385 -21.12770 -20.18301 -19.40321 -19.06505 -18.34598 -17.30824 -17.00179 -16.42635 -16.02153 -15.51718 -14.89333 -14.75675 -14.68405 -14.37071 -14.13362 -13.92528 -13.78229 -13.63607 -13.49550 -13.04796 -12.95311 -12.79497 -12.53576 -12.10576 -11.91899 -11.66740 -11.54243 -11.36276 -11.19083 -10.96143 -10.78075 -10.74059 -10.40087 -10.14335 -10.11532 -10.08273 -9.83330 -9.71530 -9.53306 -8.89761 -8.61980 -8.45235 -8.06496 -6.95514 -5.75739 -3.04798 0.80975 1.04430 2.39459 2.75564 2.85561 2.97667 3.44592 3.50112 3.51758 3.73484 4.13975 4.39322 4.47515 4.57374 4.59704 4.74643 4.90756 4.99654 5.08567 5.14892 5.26426 5.29376 5.38746 5.43759 5.51859 5.57761 5.60850 5.63038 5.74648 5.83092 5.88728 5.95275 6.00403 6.04480 6.10022 6.16714 6.19623 6.28808 6.34475 6.36306 6.40541 6.42632 6.53654 6.66536 6.78993 6.80166 7.07500 7.13333 7.60797 7.71892 8.26031 8.42463 9.53792 10.10780 10.45136 11.46671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.002215 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.941078 B =12639.122004 C =13136.123973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.196 3.804 11 H 0.055 0.945 12 C -0.143 4.143 13 C -0.097 4.097 14 C -0.132 4.132 15 H 0.082 0.918 16 C 0.119 3.881 17 N -0.619 5.619 18 C 0.578 3.422 19 O -0.540 6.540 20 C -0.152 4.152 21 C -0.071 4.071 22 C -0.136 4.136 23 C 0.112 3.888 24 N -0.594 5.594 25 H 0.416 0.584 26 C 0.044 3.956 27 C -0.194 4.194 28 C -0.122 4.122 29 C -0.008 4.008 30 C 0.129 3.871 31 C -0.117 4.117 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.070 0.930 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 -29.013 0.133 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.085 3.915 11 H 0.073 0.927 12 C -0.184 4.184 13 C -0.135 4.135 14 C -0.151 4.151 15 H 0.100 0.900 16 C -0.003 4.003 17 N -0.353 5.353 18 C 0.367 3.633 19 O -0.418 6.418 20 C -0.157 4.157 21 C -0.091 4.091 22 C -0.156 4.156 23 C 0.004 3.996 24 N -0.197 5.197 25 H 0.253 0.747 26 C -0.082 4.082 27 C -0.219 4.219 28 C -0.126 4.126 29 C -0.028 4.028 30 C 0.008 3.992 31 C -0.137 4.137 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.188 0.812 44 H 0.167 0.833 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.227 -28.735 0.771 28.832 hybrid contribution -0.112 0.636 -0.462 0.795 sum -2.339 -28.099 0.308 28.198 Atomic orbital electron populations 1.69656 1.05103 1.25673 1.57576 1.24748 0.95499 0.97709 1.02968 0.86207 0.78692 0.83944 0.77443 1.21787 1.21824 1.20755 1.19241 0.91000 0.84096 1.42746 0.91138 1.42494 1.05689 0.99663 1.88173 1.20091 0.93994 0.84989 0.92466 0.92685 1.23852 0.99860 0.93943 1.00724 1.21787 1.01174 0.97165 0.93384 1.22214 0.99816 0.95186 0.97926 0.90010 1.21475 0.99091 0.97264 0.82453 1.49537 1.57310 1.16136 1.12364 1.17845 0.77594 0.84237 0.83599 1.90795 1.59387 1.70904 1.20764 1.19564 1.06396 0.94336 0.95364 1.21002 0.96109 0.96393 0.95565 1.19675 1.05657 0.91875 0.98439 1.18434 0.99369 0.85618 0.96200 1.41784 1.53736 1.10234 1.13944 0.74726 1.21826 1.02475 0.98993 0.84888 1.21763 1.07853 0.91971 1.00265 1.19124 1.04765 0.94816 0.93914 1.20601 0.94227 0.89695 0.98260 1.21384 0.99402 0.80942 0.97462 1.22512 1.01554 0.95629 0.93978 0.89929 0.93510 0.78160 0.90741 0.92675 0.92224 0.91617 0.90968 0.91004 0.84366 0.85734 0.81152 0.83343 0.84917 0.91140 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.48 5.11 -53.21 -0.27 -17.75 16 10 C 0.20 3.67 3.40 -67.71 -0.23 3.44 16 11 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 12 C -0.14 -2.31 6.76 -23.17 -0.16 -2.47 16 13 C -0.10 -1.21 6.73 -25.75 -0.17 -1.38 16 14 C -0.13 -1.64 2.74 -90.27 -0.25 -1.89 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.12 1.35 5.25 -3.86 -0.02 1.33 16 17 N -0.62 -8.98 3.41 -173.37 -0.59 -9.57 16 18 C 0.58 9.19 7.55 -12.42 -0.09 9.10 16 19 O -0.54 -10.59 17.15 5.29 0.09 -10.50 16 20 C -0.15 -2.00 5.60 -104.97 -0.59 -2.58 16 21 C -0.07 -0.76 8.48 -39.53 -0.34 -1.10 16 22 C -0.14 -1.24 10.00 -39.85 -0.40 -1.63 16 23 C 0.11 1.07 7.27 -83.95 -0.61 0.46 16 24 N -0.59 -3.85 6.05 -10.61 -0.06 -3.91 16 25 H 0.42 1.38 8.96 -40.82 -0.37 1.02 16 26 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 27 C -0.19 -1.62 11.09 -37.65 -0.42 -2.04 16 28 C -0.12 -1.33 6.36 -105.16 -0.67 -2.00 16 29 C -0.01 -0.10 9.65 -38.86 -0.38 -0.48 16 30 C 0.13 2.08 6.73 -3.72 -0.03 2.05 16 31 C -0.12 -1.86 2.46 -90.33 -0.22 -2.08 16 32 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.38 10.03 7.66 -40.82 -0.31 9.71 16 35 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.73 5.75 -51.93 -0.30 0.43 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.14 1.33 5.08 -52.49 -0.27 1.06 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 44 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.13 1.63 7.98 -52.49 -0.42 1.21 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -34.04 379.70 -11.10 -45.14 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.68 Total: 9.19 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -5.01 Total: -8.33 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.20 Total: -58.54 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.04 -11.10 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026344290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.531 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds