Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48501 * 109.47260 * 270.00056 * 3 2 1 5 5 H 1.48499 * 109.46883 * 30.00269 * 3 2 1 6 6 H 1.48501 * 109.47026 * 150.00300 * 3 2 1 7 7 C 1.38811 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00281 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99721 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.47300 * 34.29864 * 10 9 7 12 12 C 1.56008 * 110.64259 * 271.57555 * 10 9 7 13 13 C 1.55465 * 105.84206 * 248.61024 * 12 10 9 14 14 C 1.51560 * 102.22170 * 24.94460 * 13 12 10 15 15 H 1.09000 * 111.12157 * 71.94062 * 14 13 12 16 16 C 1.51521 * 123.80272 * 208.28979 * 14 13 12 17 17 N 1.49623 * 102.49607 * 151.79332 * 16 14 13 18 18 C 1.34781 * 126.07017 * 154.37448 * 17 16 14 19 19 O 1.21581 * 119.99880 * 176.34801 * 18 17 16 20 20 C 1.47654 * 119.99945 * 356.34579 * 18 17 16 21 21 C 1.40202 * 119.97622 * 27.30293 * 20 18 17 22 22 C 1.36322 * 120.67157 * 179.97438 * 21 20 18 23 23 C 1.39367 * 120.23627 * 0.02562 * 22 21 20 24 24 N 1.37391 * 133.25466 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.00900 * 0.02562 * 24 23 22 26 26 C 1.36854 * 109.98833 * 180.02562 * 24 23 22 27 27 C 1.34193 * 109.96024 * 359.97438 * 26 24 23 28 28 C 1.40878 * 119.63938 * 0.02562 * 23 22 21 29 29 C 1.39149 * 119.97057 * 207.03489 * 20 18 17 30 30 C 1.49285 * 107.85651 * 334.34894 * 17 16 14 31 31 C 1.49707 * 104.67619 * 353.61610 * 30 17 16 32 32 H 1.09006 * 107.86124 * 281.68406 * 31 30 17 33 33 H 0.97004 * 120.00096 * 359.97438 * 1 2 3 34 34 H 0.96993 * 119.99638 * 359.97438 * 9 7 2 35 35 H 1.09000 * 110.19006 * 7.35217 * 12 10 9 36 36 H 1.08997 * 110.18937 * 129.20722 * 12 10 9 37 37 H 1.08998 * 110.36283 * 266.85733 * 13 12 10 38 38 H 1.08999 * 111.17227 * 143.39298 * 13 12 10 39 39 H 1.09001 * 110.80171 * 270.04608 * 16 14 13 40 40 H 1.09000 * 110.80048 * 33.54282 * 16 14 13 41 41 H 1.07997 * 119.67088 * 359.96347 * 21 20 18 42 42 H 1.07995 * 119.87923 * 179.97438 * 22 21 20 43 43 H 1.08003 * 125.02683 * 180.02562 * 26 24 23 44 44 H 1.08002 * 126.54886 * 179.97438 * 27 26 24 45 45 H 1.08004 * 120.30702 * 0.02562 * 29 20 18 46 46 H 1.08995 * 110.39964 * 234.81244 * 30 17 16 47 47 H 1.09007 * 110.39007 * 112.40762 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9791 -3.5652 0.5749 12 6 2.3677 -4.1130 -1.4599 13 6 1.4971 -5.3779 -1.7030 14 6 0.3622 -5.1804 -0.7180 15 1 -0.3052 -4.3821 -1.0427 16 6 -0.4140 -6.3185 -0.0871 17 7 -0.8477 -5.7300 1.2184 18 6 -1.9253 -6.1017 1.9375 19 8 -2.1387 -5.5920 3.0205 20 6 -2.8467 -7.1279 1.4100 21 6 -2.3744 -8.1019 0.5191 22 6 -3.2125 -9.0562 0.0238 23 6 -4.5547 -9.0744 0.3985 24 7 -5.6117 -9.8902 0.0744 25 1 -5.5642 -10.6503 -0.5263 26 6 -6.7415 -9.4723 0.7239 27 6 -6.4657 -8.3958 1.4761 28 6 -5.0418 -8.1005 1.2923 29 6 -4.1818 -7.1307 1.8019 30 6 0.1256 -4.6585 1.5833 31 6 1.2031 -4.7564 0.5486 32 1 1.8460 -5.5958 0.8138 33 1 -0.4850 0.8401 0.0004 34 1 0.3555 -2.3880 0.0002 35 1 2.0895 -3.3304 -2.1658 36 1 3.4258 -4.3540 -1.5621 37 1 2.0638 -6.2791 -1.4692 38 1 1.1240 -5.4082 -2.7267 39 1 -1.2770 -6.5838 -0.6978 40 1 0.2291 -7.1838 0.0729 41 1 -1.3361 -8.0962 0.2219 42 1 -2.8351 -9.8002 -0.6621 43 1 -7.7115 -9.9402 0.6437 44 1 -7.1604 -7.8505 2.0978 45 1 -4.5492 -6.3847 2.4911 46 1 0.5354 -4.8398 2.5769 47 1 -0.3533 -3.6801 1.5416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026344292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = 67.686095 kcal Electronic energy + Delta-G solvation = -28992.205146 eV Core-core repulsion = 25141.372464 eV Total energy + Delta-G solvation = -3850.832682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51662 -40.49235 -38.68161 -36.61123 -35.20383 -33.28697 -32.22941 -30.88254 -30.49106 -29.24075 -28.64047 -28.40064 -25.53315 -24.13674 -23.31700 -22.76864 -21.95427 -21.07341 -20.01496 -19.28865 -18.76558 -18.26303 -17.45798 -17.06600 -16.24813 -15.78296 -15.34937 -14.86896 -14.71932 -14.45157 -14.37068 -14.23507 -14.02430 -13.65524 -13.54507 -13.42705 -12.98769 -12.91093 -12.63834 -12.52258 -12.23484 -11.82288 -11.66216 -11.34945 -11.26009 -11.00265 -10.88084 -10.79087 -10.64724 -10.42631 -10.23717 -10.06292 -10.02431 -9.71822 -9.57025 -9.51616 -8.88378 -8.50940 -8.37918 -7.98186 -6.94139 -5.74028 -3.03187 0.87834 1.10148 2.45872 2.81401 2.97168 3.07661 3.45471 3.50870 3.52763 3.84221 4.22407 4.44795 4.54248 4.61509 4.66838 4.80776 5.00449 5.05956 5.11927 5.24920 5.33056 5.34008 5.43391 5.48638 5.52322 5.60466 5.67611 5.70318 5.83792 5.86668 5.87433 5.96414 6.05727 6.10461 6.22698 6.25832 6.31997 6.34197 6.40938 6.43700 6.47661 6.54813 6.58361 6.69820 6.84728 6.86045 7.07703 7.19412 7.71358 7.73590 8.38393 8.44117 9.55456 10.12336 10.46881 11.48256 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.002557 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.900291 B =10949.573990 C =11719.280810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.096 4.096 14 C -0.127 4.127 15 H 0.094 0.906 16 C 0.111 3.889 17 N -0.618 5.618 18 C 0.575 3.425 19 O -0.542 6.542 20 C -0.153 4.153 21 C -0.078 4.078 22 C -0.139 4.139 23 C 0.112 3.888 24 N -0.595 5.595 25 H 0.415 0.585 26 C 0.042 3.958 27 C -0.192 4.192 28 C -0.122 4.122 29 C -0.005 4.005 30 C 0.133 3.867 31 C -0.120 4.120 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.385 0.615 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.135 0.865 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -24.354 -3.052 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.073 0.927 12 C -0.187 4.187 13 C -0.135 4.135 14 C -0.146 4.146 15 H 0.112 0.888 16 C -0.011 4.011 17 N -0.352 5.352 18 C 0.365 3.635 19 O -0.420 6.420 20 C -0.157 4.157 21 C -0.097 4.097 22 C -0.159 4.159 23 C 0.004 3.996 24 N -0.197 5.197 25 H 0.252 0.748 26 C -0.083 4.083 27 C -0.217 4.217 28 C -0.126 4.126 29 C -0.024 4.024 30 C 0.012 3.988 31 C -0.140 4.140 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.188 0.812 44 H 0.167 0.833 45 H 0.153 0.847 46 H 0.088 0.912 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.864 -24.043 -2.445 25.742 hybrid contribution 0.099 0.532 -0.434 0.694 sum -8.765 -23.511 -2.879 25.256 Atomic orbital electron populations 1.69655 1.05081 1.25676 1.57475 1.24740 0.95470 0.97663 1.02961 0.86220 0.78681 0.84041 0.77409 1.21833 1.21844 1.20788 1.19236 0.90992 0.84094 1.42827 0.91140 1.42430 1.05732 0.99558 1.88171 1.20024 0.93771 0.85239 0.92436 0.92676 1.23701 0.97899 0.96420 1.00660 1.21649 0.95322 0.98694 0.97801 1.22654 0.97202 0.98213 0.96504 0.88785 1.22072 0.98694 0.95829 0.84455 1.49674 1.26029 1.37301 1.22164 1.17830 0.79793 0.81877 0.83988 1.90789 1.73685 1.56609 1.20907 1.19573 0.94381 0.98988 1.02776 1.21194 1.00431 0.93215 0.94905 1.19659 0.89983 1.01803 1.04478 1.18438 0.89691 0.92940 0.98537 1.41769 1.07404 1.28270 1.42304 0.74791 1.21815 0.90922 0.98161 0.97404 1.21779 0.94007 1.00199 1.05703 1.19138 0.94343 0.97770 1.01398 1.20647 0.90833 0.95600 0.95335 1.20962 0.89019 0.91246 0.97592 1.22046 0.96470 1.00798 0.94723 0.91406 0.93496 0.78084 0.90636 0.92825 0.92118 0.92056 0.89888 0.90978 0.84038 0.85820 0.81167 0.83306 0.84714 0.91212 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.28 4.90 -53.44 -0.26 -17.54 16 10 C 0.20 3.69 3.45 -67.95 -0.23 3.45 16 11 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 12 C -0.15 -2.36 6.71 -23.81 -0.16 -2.52 16 13 C -0.10 -1.24 6.58 -26.15 -0.17 -1.41 16 14 C -0.13 -1.80 3.09 -89.45 -0.28 -2.08 16 15 H 0.09 1.61 7.94 -51.93 -0.41 1.20 16 16 C 0.11 1.36 4.72 -3.05 -0.01 1.35 16 17 N -0.62 -9.76 3.43 -172.75 -0.59 -10.36 16 18 C 0.58 9.90 7.66 -12.41 -0.10 9.80 16 19 O -0.54 -11.32 17.00 5.29 0.09 -11.23 16 20 C -0.15 -2.16 5.72 -104.98 -0.60 -2.76 16 21 C -0.08 -0.87 7.86 -39.53 -0.31 -1.18 16 22 C -0.14 -1.32 10.00 -39.85 -0.40 -1.72 16 23 C 0.11 1.15 7.27 -83.96 -0.61 0.54 16 24 N -0.59 -4.24 6.05 -10.61 -0.06 -4.30 16 25 H 0.42 1.60 8.96 -40.82 -0.37 1.23 16 26 C 0.04 0.29 11.81 -16.74 -0.20 0.09 16 27 C -0.19 -1.80 11.09 -37.65 -0.42 -2.21 16 28 C -0.12 -1.46 6.36 -105.15 -0.67 -2.13 16 29 C 0.00 -0.06 9.64 -38.86 -0.37 -0.44 16 30 C 0.13 2.34 6.67 -4.13 -0.03 2.31 16 31 C -0.12 -1.92 2.26 -91.23 -0.21 -2.12 16 32 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.38 9.99 6.70 -40.82 -0.27 9.71 16 35 H 0.07 1.42 7.99 -51.93 -0.41 1.01 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.92 6.19 -51.93 -0.32 0.60 16 40 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 41 H 0.14 1.33 4.59 -52.49 -0.24 1.09 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.17 0.53 8.06 -52.48 -0.42 0.10 16 44 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.14 1.88 7.87 -52.48 -0.41 1.47 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.78 7.17 -51.92 -0.37 1.40 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -34.20 375.48 -11.02 -45.22 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.54 Total: 10.67 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -5.01 Total: -8.13 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.19 Total: -59.57 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.20 -11.02 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026344292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.907 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds