Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00019 * 2 1 4 4 H 1.48501 * 109.46813 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47232 * 299.99992 * 3 2 1 6 6 H 1.48498 * 109.47141 * 60.00487 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00401 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00271 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.46682 * 32.35847 * 10 9 7 12 12 C 1.56004 * 110.52721 * 269.56866 * 10 9 7 13 13 C 1.56922 * 105.74254 * 234.45413 * 12 10 9 14 14 C 1.51559 * 101.70678 * 334.50575 * 13 12 10 15 15 H 1.08996 * 111.53834 * 288.45964 * 14 13 12 16 16 C 1.51527 * 123.34241 * 152.10933 * 14 13 12 17 17 N 1.49627 * 102.48857 * 208.36063 * 16 14 13 18 18 C 1.34775 * 126.06832 * 205.67025 * 17 16 14 19 19 O 1.21595 * 120.00012 * 356.31049 * 18 17 16 20 20 C 1.47510 * 119.99984 * 176.31645 * 18 17 16 21 21 C 1.39343 * 120.20521 * 353.48548 * 20 18 17 22 22 C 1.38322 * 120.49473 * 179.72851 * 21 20 18 23 23 C 1.37917 * 120.58842 * 0.57082 * 22 21 20 24 24 C 1.39538 * 119.99169 * 359.71126 * 23 22 21 25 25 C 1.46569 * 133.95461 * 179.97438 * 24 23 22 26 26 C 1.34216 * 106.89201 * 179.97438 * 25 24 23 27 27 N 1.36907 * 109.88214 * 0.02562 * 26 25 24 28 28 H 0.96996 * 125.01815 * 180.02562 * 27 26 25 29 29 C 1.37126 * 109.97038 * 359.97438 * 27 26 25 30 30 C 1.49288 * 107.86009 * 25.65099 * 17 16 14 31 31 C 1.49704 * 110.52722 * 154.99756 * 10 9 7 32 32 H 1.08994 * 107.87648 * 40.90232 * 31 10 9 33 33 H 0.97010 * 119.99705 * 359.97438 * 1 2 3 34 34 H 0.97001 * 120.00149 * 359.97438 * 9 7 2 35 35 H 1.09000 * 110.18702 * 353.48774 * 12 10 9 36 36 H 1.09003 * 110.19426 * 115.26242 * 12 10 9 37 37 H 1.08997 * 110.93072 * 216.44181 * 13 12 10 38 38 H 1.09005 * 111.08965 * 92.63676 * 13 12 10 39 39 H 1.08998 * 110.79916 * 90.11089 * 16 14 13 40 40 H 1.08996 * 110.96880 * 326.68680 * 16 14 13 41 41 H 1.07996 * 119.75251 * 0.02562 * 21 20 18 42 42 H 1.07998 * 119.70867 * 180.26374 * 22 21 20 43 43 H 1.07998 * 120.00356 * 179.72528 * 23 22 21 44 44 H 1.07994 * 126.55750 * 359.97438 * 25 24 23 45 45 H 1.07999 * 125.05831 * 179.97438 * 26 25 24 46 46 H 1.08999 * 110.39710 * 125.18228 * 30 17 16 47 47 H 1.08995 * 110.39635 * 247.47493 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9956 -3.5560 0.5439 12 6 2.3219 -4.1347 -1.4641 13 6 1.7428 -5.5908 -1.5470 14 6 1.8206 -6.0355 -0.1002 15 1 2.8508 -6.2115 0.2095 16 6 0.8848 -7.0607 0.5075 17 7 0.8476 -6.6520 1.9464 18 6 0.5796 -7.4574 2.9933 19 8 0.2729 -8.6187 2.8041 20 6 0.6583 -6.9300 4.3687 21 6 1.1389 -5.6426 4.5994 22 6 1.2100 -5.1399 5.8861 23 6 0.8177 -5.9081 6.9623 24 6 0.3383 -7.2024 6.7575 25 6 -0.1481 -8.2599 7.6483 26 6 -0.4800 -9.3025 6.8710 27 7 -0.2449 -8.9973 5.5572 28 1 -0.4079 -9.5934 4.8096 29 6 0.2541 -7.7242 5.4542 30 6 1.1605 -5.1940 2.0165 31 6 1.2200 -4.7472 0.5889 32 1 0.2012 -4.6226 0.2220 33 1 -0.4850 0.8402 0.0004 34 1 0.3555 -2.3881 -0.0016 35 1 1.8069 -3.4846 -2.1713 36 1 3.3922 -4.1411 -1.6704 37 1 2.3643 -6.2214 -2.1827 38 1 0.7107 -5.5831 -1.8976 39 1 1.2909 -8.0666 0.4011 40 1 -0.1074 -6.9962 0.0609 41 1 1.4538 -5.0309 3.7669 42 1 1.5806 -4.1389 6.0499 43 1 0.8813 -5.5078 7.9633 44 1 -0.2247 -8.2098 8.7243 45 1 -0.8733 -10.2426 7.2287 46 1 0.3723 -4.6615 2.5487 47 1 2.1220 -5.0349 2.5047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026362591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = 75.533248 kcal Electronic energy + Delta-G solvation = -29212.944159 eV Core-core repulsion = 25362.451755 eV Total energy + Delta-G solvation = -3850.492404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52434 -40.51537 -38.54353 -36.89307 -35.34811 -33.53425 -32.19933 -30.99861 -29.86459 -29.38856 -29.24203 -28.04216 -25.58960 -24.46536 -23.12487 -22.57634 -21.83040 -21.12288 -20.24555 -19.78001 -19.14711 -17.70365 -17.29146 -16.96530 -16.34184 -16.03803 -15.43133 -15.20770 -14.78376 -14.64807 -14.46296 -14.04369 -13.98343 -13.80230 -13.56518 -13.22733 -13.00395 -12.78267 -12.63228 -12.44262 -12.00095 -11.91819 -11.69998 -11.60577 -11.52781 -11.16188 -10.94205 -10.84358 -10.76562 -10.44526 -10.19120 -10.13992 -9.86823 -9.81964 -9.78140 -9.60326 -8.96481 -8.73113 -8.32669 -7.86951 -7.02777 -5.82233 -3.11694 0.63703 1.55510 2.38647 2.81940 3.00793 3.10647 3.39916 3.46096 3.48088 3.88246 4.07172 4.47589 4.53628 4.60640 4.83959 4.88206 4.91111 4.99640 5.13064 5.21606 5.25313 5.36596 5.40909 5.46462 5.49924 5.53653 5.63449 5.67333 5.77195 5.78120 5.84654 5.87768 5.93851 6.02115 6.05595 6.07527 6.24685 6.29821 6.32769 6.44031 6.45123 6.56041 6.59632 6.60341 6.74408 6.99875 7.01457 7.36987 7.53419 7.66526 8.10436 8.35744 9.47496 10.03361 10.37817 11.40063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003025 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.928344 B = 9252.609659 C =11023.152008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.199 3.801 11 H 0.057 0.943 12 C -0.143 4.143 13 C -0.100 4.100 14 C -0.126 4.126 15 H 0.087 0.913 16 C 0.127 3.873 17 N -0.616 5.616 18 C 0.580 3.420 19 O -0.565 6.565 20 C -0.150 4.150 21 C -0.088 4.088 22 C -0.157 4.157 23 C -0.043 4.043 24 C -0.126 4.126 25 C -0.204 4.204 26 C 0.045 3.955 27 N -0.581 5.581 28 H 0.425 0.575 29 C 0.150 3.850 30 C 0.116 3.884 31 C -0.125 4.125 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.165 0.835 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.170 0.830 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -17.229 10.233 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.088 3.912 11 H 0.075 0.925 12 C -0.184 4.184 13 C -0.139 4.139 14 C -0.145 4.145 15 H 0.105 0.895 16 C 0.006 3.994 17 N -0.349 5.349 18 C 0.372 3.628 19 O -0.446 6.446 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.176 4.176 23 C -0.062 4.062 24 C -0.131 4.131 25 C -0.229 4.229 26 C -0.081 4.081 27 N -0.184 5.184 28 H 0.265 0.735 29 C 0.039 3.961 30 C -0.005 4.005 31 C -0.145 4.145 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.165 0.835 45 H 0.188 0.812 46 H 0.104 0.896 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.362 -17.848 10.126 20.566 hybrid contribution -0.036 0.715 -0.295 0.774 sum 1.326 -17.134 9.831 19.799 Atomic orbital electron populations 1.69668 1.05111 1.25620 1.57525 1.24741 0.95479 0.97702 1.02851 0.86155 0.78830 0.84216 0.77201 1.20532 1.21921 1.21851 1.19279 0.91033 0.84023 1.42844 0.91057 1.42518 1.05687 0.99641 1.88203 1.19941 0.94081 0.84854 0.92327 0.92506 1.23899 0.99947 0.93993 1.00560 1.21950 1.01271 0.97159 0.93476 1.22606 0.99367 0.95068 0.97490 0.89505 1.21654 0.99644 0.98424 0.79718 1.49665 1.68914 1.09899 1.06437 1.17869 0.76420 0.84713 0.83813 1.90656 1.50489 1.17475 1.85979 1.18805 1.10576 0.95744 0.90466 1.22587 0.94871 0.93641 0.99566 1.20939 1.04018 1.00678 0.91995 1.20758 0.94699 0.91542 0.99188 1.19204 1.06375 0.95545 0.91970 1.21676 1.09465 0.92983 0.98733 1.21905 1.03264 1.00357 0.82624 1.41964 1.55029 1.13014 1.08379 0.73540 1.17955 0.98371 0.85672 0.94150 1.21552 1.01179 0.79768 0.97974 1.22190 1.02379 0.96439 0.93521 0.90387 0.93517 0.78153 0.90735 0.92587 0.92135 0.91480 0.90475 0.91003 0.81809 0.85043 0.85653 0.83484 0.81241 0.89600 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.25 9.96 -15.06 -0.15 -6.40 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.52 5.10 -53.45 -0.27 -16.79 16 10 C 0.20 3.51 3.45 -67.96 -0.23 3.28 16 11 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 12 C -0.14 -2.26 6.76 -23.00 -0.16 -2.41 16 13 C -0.10 -1.27 6.64 -25.34 -0.17 -1.44 16 14 C -0.13 -1.58 3.14 -89.37 -0.28 -1.86 16 15 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.13 1.64 6.71 -3.05 -0.02 1.62 16 17 N -0.62 -8.68 3.43 -174.27 -0.60 -9.28 16 18 C 0.58 9.00 7.82 -12.48 -0.10 8.90 16 19 O -0.56 -9.70 15.54 5.28 0.08 -9.62 16 20 C -0.15 -2.17 5.88 -104.87 -0.62 -2.79 16 21 C -0.09 -1.14 8.67 -39.14 -0.34 -1.48 16 22 C -0.16 -1.82 10.00 -39.67 -0.40 -2.22 16 23 C -0.04 -0.49 10.09 -39.21 -0.40 -0.88 16 24 C -0.13 -1.59 6.37 -105.15 -0.67 -2.26 16 25 C -0.20 -2.07 11.09 -37.64 -0.42 -2.49 16 26 C 0.04 0.42 11.82 -16.70 -0.20 0.22 16 27 N -0.58 -6.97 5.87 -10.45 -0.06 -7.03 16 28 H 0.43 4.96 7.57 -40.82 -0.31 4.65 16 29 C 0.15 2.09 6.87 -83.76 -0.58 1.51 16 30 C 0.12 1.58 4.72 -4.12 -0.02 1.56 16 31 C -0.13 -1.85 2.21 -91.15 -0.20 -2.05 16 32 H 0.08 1.26 7.73 -51.93 -0.40 0.86 16 33 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.38 9.51 7.65 -40.82 -0.31 9.20 16 35 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.17 2.00 2.79 -54.41 -0.15 1.85 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.09 1.20 7.07 -51.93 -0.37 0.83 16 47 H 0.08 1.03 6.59 -51.93 -0.34 0.69 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -31.37 374.21 -11.03 -42.40 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -6.49 Total: 14.02 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -5.03 Total: -9.61 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.21 Total: -59.38 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.37 -11.03 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026362591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.937 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds