Wall clock time and date at job start Tue Mar 31 2020 22:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00019 * 2 1 4 4 H 1.48501 * 109.46813 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47232 * 299.99992 * 3 2 1 6 6 H 1.48498 * 109.47141 * 60.00487 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00401 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00271 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.46682 * 32.35847 * 10 9 7 12 12 C 1.56004 * 110.52721 * 269.56866 * 10 9 7 13 13 C 1.56922 * 105.74254 * 234.45413 * 12 10 9 14 14 C 1.51559 * 101.70678 * 334.50575 * 13 12 10 15 15 H 1.08996 * 111.53834 * 288.45964 * 14 13 12 16 16 C 1.51527 * 123.34241 * 152.10933 * 14 13 12 17 17 N 1.49627 * 102.48857 * 208.36063 * 16 14 13 18 18 C 1.34775 * 126.06832 * 205.67025 * 17 16 14 19 19 O 1.21595 * 120.00012 * 356.31049 * 18 17 16 20 20 C 1.47510 * 119.99984 * 176.31645 * 18 17 16 21 21 C 1.39343 * 120.20521 * 353.48548 * 20 18 17 22 22 C 1.38322 * 120.49473 * 179.72851 * 21 20 18 23 23 C 1.37917 * 120.58842 * 0.57082 * 22 21 20 24 24 C 1.39538 * 119.99169 * 359.71126 * 23 22 21 25 25 C 1.46569 * 133.95461 * 179.97438 * 24 23 22 26 26 C 1.34216 * 106.89201 * 179.97438 * 25 24 23 27 27 N 1.36907 * 109.88214 * 0.02562 * 26 25 24 28 28 H 0.96996 * 125.01815 * 180.02562 * 27 26 25 29 29 C 1.37126 * 109.97038 * 359.97438 * 27 26 25 30 30 C 1.49288 * 107.86009 * 25.65099 * 17 16 14 31 31 C 1.49704 * 110.52722 * 154.99756 * 10 9 7 32 32 H 1.08994 * 107.87648 * 40.90232 * 31 10 9 33 33 H 0.97010 * 119.99705 * 359.97438 * 1 2 3 34 34 H 0.97001 * 120.00149 * 359.97438 * 9 7 2 35 35 H 1.09000 * 110.18702 * 353.48774 * 12 10 9 36 36 H 1.09003 * 110.19426 * 115.26242 * 12 10 9 37 37 H 1.08997 * 110.93072 * 216.44181 * 13 12 10 38 38 H 1.09005 * 111.08965 * 92.63676 * 13 12 10 39 39 H 1.08998 * 110.79916 * 90.11089 * 16 14 13 40 40 H 1.08996 * 110.96880 * 326.68680 * 16 14 13 41 41 H 1.07996 * 119.75251 * 0.02562 * 21 20 18 42 42 H 1.07998 * 119.70867 * 180.26374 * 22 21 20 43 43 H 1.07998 * 120.00356 * 179.72528 * 23 22 21 44 44 H 1.07994 * 126.55750 * 359.97438 * 25 24 23 45 45 H 1.07999 * 125.05831 * 179.97438 * 26 25 24 46 46 H 1.08999 * 110.39710 * 125.18228 * 30 17 16 47 47 H 1.08995 * 110.39635 * 247.47493 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9956 -3.5560 0.5439 12 6 2.3219 -4.1347 -1.4641 13 6 1.7428 -5.5908 -1.5470 14 6 1.8206 -6.0355 -0.1002 15 1 2.8508 -6.2115 0.2095 16 6 0.8848 -7.0607 0.5075 17 7 0.8476 -6.6520 1.9464 18 6 0.5796 -7.4574 2.9933 19 8 0.2729 -8.6187 2.8041 20 6 0.6583 -6.9300 4.3687 21 6 1.1389 -5.6426 4.5994 22 6 1.2100 -5.1399 5.8861 23 6 0.8177 -5.9081 6.9623 24 6 0.3383 -7.2024 6.7575 25 6 -0.1481 -8.2599 7.6483 26 6 -0.4800 -9.3025 6.8710 27 7 -0.2449 -8.9973 5.5572 28 1 -0.4079 -9.5934 4.8096 29 6 0.2541 -7.7242 5.4542 30 6 1.1605 -5.1940 2.0165 31 6 1.2200 -4.7472 0.5889 32 1 0.2012 -4.6226 0.2220 33 1 -0.4850 0.8402 0.0004 34 1 0.3555 -2.3881 -0.0016 35 1 1.8069 -3.4846 -2.1713 36 1 3.3922 -4.1411 -1.6704 37 1 2.3643 -6.2214 -2.1827 38 1 0.7107 -5.5831 -1.8976 39 1 1.2909 -8.0666 0.4011 40 1 -0.1074 -6.9962 0.0609 41 1 1.4538 -5.0309 3.7669 42 1 1.5806 -4.1389 6.0499 43 1 0.8813 -5.5078 7.9633 44 1 -0.2247 -8.2098 8.7243 45 1 -0.8733 -10.2426 7.2287 46 1 0.3723 -4.6615 2.5487 47 1 2.1220 -5.0349 2.5047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026362591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:48 Heat of formation + Delta-G solvation = 57.544915 kcal Electronic energy + Delta-G solvation = -29213.724192 eV Core-core repulsion = 25362.451755 eV Total energy + Delta-G solvation = -3851.272437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.45474 -41.62306 -39.72977 -37.82957 -36.76034 -35.13052 -33.25668 -32.55510 -30.93508 -30.58378 -30.21464 -29.16011 -27.07313 -25.54051 -24.87115 -23.63154 -22.79315 -21.99817 -21.39640 -20.79950 -20.43513 -19.10760 -18.62985 -18.11926 -17.46992 -17.03106 -16.71176 -16.53965 -16.01514 -15.69393 -15.50690 -15.44584 -15.33464 -14.91895 -14.74972 -14.45537 -14.00391 -13.94517 -13.73786 -13.68243 -13.17122 -13.12698 -12.95418 -12.80982 -12.63954 -12.57664 -12.47573 -12.19292 -12.08013 -12.00595 -11.73378 -11.56235 -11.36057 -11.01140 -10.92077 -10.85355 -10.74860 -9.86906 -9.23420 -8.94877 -8.72972 -7.89237 -5.16780 -0.30893 0.62183 1.50085 1.50960 1.52024 1.61026 1.71456 2.02477 2.27298 2.60359 2.90076 2.93530 3.41566 3.48561 3.62117 3.75154 3.87459 3.99712 4.03954 4.08511 4.21101 4.25180 4.31024 4.38329 4.43063 4.49428 4.56838 4.62704 4.66619 4.69060 4.74704 4.83155 4.86105 4.89988 4.95894 4.99473 5.06515 5.16863 5.21310 5.35743 5.38111 5.49982 5.53484 5.54229 5.65988 5.73315 5.77995 6.14227 6.29185 6.32976 6.62841 6.94949 7.39636 8.15533 8.37740 9.34262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003025 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.928344 B = 9252.609659 C =11023.152008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.732 5.732 10 C 0.193 3.807 11 H 0.059 0.941 12 C -0.138 4.138 13 C -0.089 4.089 14 C -0.105 4.105 15 H 0.098 0.902 16 C 0.126 3.874 17 N -0.615 5.615 18 C 0.574 3.426 19 O -0.588 6.588 20 C -0.174 4.174 21 C -0.094 4.094 22 C -0.166 4.166 23 C -0.040 4.040 24 C -0.144 4.144 25 C -0.212 4.212 26 C 0.049 3.951 27 N -0.588 5.588 28 H 0.423 0.577 29 C 0.120 3.880 30 C 0.122 3.878 31 C -0.123 4.123 32 H 0.061 0.939 33 H 0.248 0.752 34 H 0.372 0.628 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.210 0.790 46 H 0.079 0.921 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -18.473 11.433 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.371 5.371 10 C 0.084 3.916 11 H 0.077 0.923 12 C -0.178 4.178 13 C -0.127 4.127 14 C -0.125 4.125 15 H 0.116 0.884 16 C 0.006 3.994 17 N -0.348 5.348 18 C 0.367 3.633 19 O -0.472 6.472 20 C -0.180 4.180 21 C -0.112 4.112 22 C -0.185 4.185 23 C -0.058 4.058 24 C -0.149 4.149 25 C -0.236 4.236 26 C -0.076 4.076 27 N -0.191 5.191 28 H 0.262 0.738 29 C 0.009 3.991 30 C 0.001 3.999 31 C -0.143 4.143 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.192 0.808 45 H 0.227 0.773 46 H 0.097 0.903 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.716 -19.127 11.323 22.393 hybrid contribution -0.425 1.006 -0.619 1.255 sum 2.291 -18.121 10.704 21.170 Atomic orbital electron populations 1.69817 1.06550 1.25692 1.60050 1.25462 0.96211 1.00800 1.04273 0.85188 0.78465 0.80479 0.76348 1.18895 1.22688 1.22371 1.19650 0.91453 0.85075 1.40033 0.90389 1.42701 1.05288 1.00825 1.88281 1.20166 0.93982 0.83537 0.93924 0.92339 1.23718 1.00650 0.95447 0.98018 1.21877 1.01615 0.95274 0.93937 1.22526 0.99671 0.93243 0.97014 0.88380 1.21711 0.99814 0.98788 0.79136 1.49666 1.68529 1.09840 1.06723 1.18144 0.76097 0.84540 0.84504 1.90623 1.51778 1.18385 1.86405 1.18878 1.12360 0.96695 0.90101 1.22661 0.94935 0.93245 1.00383 1.21214 1.04055 1.01615 0.91613 1.21128 0.93215 0.91048 1.00427 1.19666 1.06589 0.96560 0.92077 1.22074 1.09281 0.92276 0.99962 1.22622 1.01941 1.01706 0.81339 1.42136 1.55017 1.12505 1.09413 0.73783 1.18270 0.99388 0.86709 0.94752 1.21499 1.01683 0.79498 0.97195 1.21984 1.01052 0.96669 0.94630 0.92015 0.94289 0.79604 0.93420 0.91246 0.89418 0.91577 0.89807 0.90994 0.81710 0.83183 0.82829 0.80796 0.77330 0.90333 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 2 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.23 -11.96 9.96 84.03 0.84 -11.13 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.73 -33.97 5.10 -323.02 -1.65 -35.61 16 10 C 0.19 6.69 3.45 44.98 0.16 6.85 16 11 H 0.06 2.01 8.09 -2.38 -0.02 1.99 16 12 C -0.14 -4.18 6.76 33.01 0.22 -3.96 16 13 C -0.09 -2.07 6.64 31.50 0.21 -1.86 16 14 C -0.11 -2.45 3.14 -9.98 -0.03 -2.49 16 15 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 16 C 0.13 3.13 6.71 85.29 0.57 3.70 16 17 N -0.62 -17.16 3.43 -823.52 -2.82 -19.98 16 18 C 0.57 17.98 7.82 86.69 0.68 18.66 16 19 O -0.59 -20.46 15.54 -4.01 -0.06 -20.52 16 20 C -0.17 -5.09 5.88 -20.03 -0.12 -5.21 16 21 C -0.09 -2.41 8.67 22.56 0.20 -2.21 16 22 C -0.17 -3.69 10.00 22.21 0.22 -3.46 16 23 C -0.04 -0.83 10.09 22.51 0.23 -0.61 16 24 C -0.14 -3.45 6.37 -20.21 -0.13 -3.58 16 25 C -0.21 -3.83 11.09 23.53 0.26 -3.57 16 26 C 0.05 0.82 11.82 82.98 0.98 1.80 16 27 N -0.59 -13.77 5.87 -186.97 -1.10 -14.87 16 28 H 0.42 9.88 7.57 -92.71 -0.70 9.18 16 29 C 0.12 3.34 6.87 39.44 0.27 3.61 16 30 C 0.12 3.28 4.72 84.78 0.40 3.68 16 31 C -0.12 -3.59 2.21 -11.14 -0.02 -3.61 16 32 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 33 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 34 H 0.37 18.97 7.65 -92.71 -0.71 18.26 16 35 H 0.05 1.72 7.98 -2.39 -0.02 1.70 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.08 2.00 8.11 -2.39 -0.02 1.98 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.17 4.01 2.79 -4.72 -0.01 4.00 16 42 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.08 2.24 7.07 -2.39 -0.02 2.22 16 47 H 0.10 2.33 6.59 -2.39 -0.02 2.31 16 Total: -1.00 -69.00 374.21 1.68 -67.31 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -0.40 Total: 41.41 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.40 Total: -7.07 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.28 Total: -127.85 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.00 1.68 -67.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026362591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.860 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds