Wall clock time and date at job start Tue Mar 31 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47274 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00218 * 3 2 1 7 7 C 1.38815 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21613 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.47428 * 120.00138 * 179.97438 * 15 14 13 18 18 C 1.38747 * 120.33053 * 359.73046 * 17 15 14 19 19 C 1.38873 * 120.72390 * 179.73239 * 18 17 15 20 20 C 1.36352 * 121.05657 * 0.54464 * 19 18 17 21 21 C 1.40440 * 120.08479 * 359.72114 * 20 19 18 22 22 C 1.40803 * 121.25575 * 179.97438 * 21 20 19 23 23 C 1.36635 * 118.15315 * 180.02562 * 22 21 20 24 24 C 1.39228 * 119.90430 * 359.97438 * 23 22 21 25 25 N 1.31237 * 121.70153 * 0.02562 * 24 23 22 26 26 C 1.33342 * 121.35094 * 359.96368 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 28 28 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 29 29 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 32 32 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 38 38 H 1.07992 * 119.63513 * 359.97438 * 18 17 15 39 39 H 1.08004 * 119.47036 * 180.28212 * 19 18 17 40 40 H 1.08001 * 119.95513 * 179.73687 * 20 19 18 41 41 H 1.07998 * 120.92156 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.04419 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.14846 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47486 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.46716 * 60.00091 * 27 13 12 46 46 H 1.09002 * 109.47153 * 179.97438 * 28 10 9 47 47 H 1.09001 * 109.47289 * 299.99924 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4995 -2.2588 0.6080 12 6 6.2675 -1.2264 -0.2198 13 6 6.4131 -1.7312 -1.6568 14 7 7.1490 -0.7430 -2.4494 15 6 7.8313 -1.1308 -3.5451 16 8 7.8357 -2.3010 -3.8761 17 6 8.5714 -0.1362 -4.3430 18 6 8.5656 1.2017 -3.9754 19 6 9.2643 2.1445 -4.7178 20 6 9.9643 1.7850 -5.8314 21 6 9.9924 0.4423 -6.2422 22 6 10.7067 0.0437 -7.3883 23 6 10.6905 -1.2790 -7.7304 24 6 9.9807 -2.1888 -6.9514 25 7 9.3165 -1.8121 -5.8841 26 6 9.2924 -0.5366 -5.4962 27 6 5.0258 -1.9434 -2.2659 28 6 4.2577 -2.9757 -1.4380 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 3.5649 -3.2063 0.5886 32 1 6.0446 -3.2026 0.6076 33 1 5.3958 -1.8991 1.6317 34 1 5.7225 -0.2824 -0.2198 35 1 7.2561 -1.0757 0.2138 36 1 6.9581 -2.6752 -1.6568 37 1 7.1452 0.1904 -2.1855 38 1 8.0148 1.5125 -3.1000 39 1 9.2497 3.1799 -4.4107 40 1 10.4980 2.5336 -6.3980 41 1 11.2515 0.7637 -7.9809 42 1 11.2276 -1.6182 -8.6038 43 1 9.9766 -3.2316 -7.2329 44 1 5.1295 -2.3034 -3.2895 45 1 4.4808 -0.9994 -2.2659 46 1 4.8031 -3.9195 -1.4381 47 1 3.2693 -3.1268 -1.8720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026523155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:59 Heat of formation + Delta-G solvation = 34.031521 kcal Electronic energy + Delta-G solvation = -28959.296669 eV Core-core repulsion = 25107.004615 eV Total energy + Delta-G solvation = -3852.292054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25365 -39.68802 -38.07523 -37.18836 -34.68750 -33.73488 -32.82581 -31.10328 -30.80508 -30.35206 -30.14434 -27.92308 -24.95639 -23.89431 -23.69588 -23.07172 -22.28325 -21.47408 -20.33384 -18.77166 -18.51956 -17.84356 -17.71774 -17.14818 -16.24993 -15.94732 -15.13204 -15.07287 -14.81224 -14.56232 -14.37119 -14.24398 -14.03438 -13.92552 -13.52354 -13.35116 -13.28797 -12.64247 -12.49937 -12.32838 -12.26973 -12.05110 -11.96357 -11.74216 -11.68833 -11.05794 -10.89992 -10.80439 -10.73775 -10.49964 -10.15952 -10.06693 -9.92333 -9.76484 -9.50944 -9.27872 -9.15667 -8.89997 -8.79159 -8.56615 -7.21654 -5.74108 -3.08144 -0.16795 0.47656 1.45237 2.45271 3.14988 3.19924 3.34738 3.36576 3.43770 3.91009 3.97970 4.20525 4.36138 4.45465 4.54447 4.59845 4.64707 4.75097 4.92317 4.98702 5.11356 5.14549 5.29527 5.34421 5.46927 5.51956 5.55841 5.56166 5.67452 5.69214 5.77842 5.81344 5.88827 5.95190 5.99148 6.03711 6.10688 6.11897 6.26475 6.43023 6.43319 6.51873 6.60784 6.75152 6.86519 6.94505 7.05252 7.59766 7.77007 8.04368 8.38172 8.45621 9.24830 9.97301 10.17971 11.44805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.002792 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.670919 B =10025.377512 C =10877.841598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.150 3.850 14 N -0.725 5.725 15 C 0.551 3.449 16 O -0.498 6.498 17 C -0.104 4.104 18 C -0.064 4.064 19 C -0.125 4.125 20 C -0.074 4.074 21 C -0.112 4.112 22 C -0.060 4.060 23 C -0.175 4.175 24 C 0.131 3.869 25 N -0.436 5.436 26 C 0.161 3.839 27 C -0.119 4.119 28 C -0.130 4.130 29 H 0.258 0.742 30 H 0.359 0.641 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.393 0.607 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.160 0.840 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.080 2.935 -12.587 29.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.194 4.194 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.068 3.932 11 C -0.160 4.160 12 C -0.162 4.162 13 C 0.047 3.953 14 N -0.377 5.377 15 C 0.337 3.663 16 O -0.372 6.372 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.143 4.143 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.195 4.195 24 C -0.042 4.042 25 N -0.142 5.142 26 C 0.038 3.962 27 C -0.158 4.158 28 C -0.171 4.171 29 H 0.068 0.932 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.318 1.432 -12.217 28.148 hybrid contribution 0.949 2.523 -0.544 2.750 sum 26.267 3.955 -12.761 29.469 Atomic orbital electron populations 1.69696 1.05068 1.25635 1.58047 1.24657 0.95188 0.97036 1.02493 0.86599 0.79232 0.85384 0.77641 1.21201 1.21852 1.20424 1.19112 0.80766 0.94631 1.42145 0.89205 1.42825 1.03813 1.01996 1.90226 1.20226 0.90369 0.89277 0.93347 1.21768 0.96717 0.98352 0.99118 1.21760 1.00136 1.00272 0.94046 1.21064 0.92753 0.91875 0.89657 1.46110 1.51850 1.11901 1.27880 1.17885 0.79467 0.88204 0.80760 1.90851 1.60840 1.17452 1.68045 1.20011 1.00716 0.93904 0.96191 1.21506 0.96383 0.91657 0.98915 1.20860 0.97702 1.00121 0.95567 1.21163 0.97503 0.94354 0.96229 1.18846 1.00445 0.94821 0.97291 1.21459 0.96007 0.96628 0.94471 1.21975 1.01505 0.94260 1.01783 1.23214 0.90770 1.00552 0.89627 1.68344 1.16061 1.16084 1.13757 1.18627 0.94801 0.89058 0.93706 1.21758 0.94106 1.01179 0.98735 1.22072 0.99924 0.96701 0.98358 0.93176 0.80715 0.92466 0.91746 0.91399 0.91440 0.92056 0.89652 0.77198 0.84671 0.84693 0.84844 0.84269 0.84419 0.82245 0.92648 0.91125 0.93245 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.42 13.97 55.49 0.78 -28.64 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 3 Si 0.88 21.77 27.73 -169.99 -4.71 17.05 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -16.98 4.08 -53.42 -0.22 -17.20 16 10 C 0.18 3.32 3.10 -67.93 -0.21 3.11 16 11 C -0.12 -1.82 5.61 -26.73 -0.15 -1.97 16 12 C -0.12 -1.74 5.22 -26.73 -0.14 -1.88 16 13 C 0.15 2.25 2.45 -67.93 -0.17 2.09 16 14 N -0.73 -9.85 5.03 -54.88 -0.28 -10.13 16 15 C 0.55 8.53 7.73 -12.52 -0.10 8.43 16 16 O -0.50 -9.47 14.85 5.27 0.08 -9.39 16 17 C -0.10 -1.37 5.91 -104.61 -0.62 -1.99 16 18 C -0.06 -0.61 9.52 -39.16 -0.37 -0.98 16 19 C -0.12 -0.94 9.93 -40.03 -0.40 -1.34 16 20 C -0.07 -0.56 9.75 -39.43 -0.38 -0.94 16 21 C -0.11 -1.12 5.74 -106.82 -0.61 -1.73 16 22 C -0.06 -0.45 9.90 -39.19 -0.39 -0.84 16 23 C -0.18 -1.30 10.03 -39.79 -0.40 -1.70 16 24 C 0.13 1.34 11.15 -17.44 -0.19 1.15 16 25 N -0.44 -6.28 8.44 -10.76 -0.09 -6.37 16 26 C 0.16 2.16 6.61 -84.58 -0.56 1.60 16 27 C -0.12 -2.09 5.34 -26.73 -0.14 -2.23 16 28 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.36 8.00 3.92 -40.82 -0.16 7.84 16 31 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.02 6.51 -51.93 -0.34 0.69 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 37 H 0.39 4.30 6.63 -40.82 -0.27 4.03 16 38 H 0.14 0.99 6.37 -52.49 -0.33 0.65 16 39 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -36.23 376.52 -10.56 -46.79 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.55 Total: 10.69 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -5.23 Total: -8.47 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.19 Total: -62.34 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.23 -10.56 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026523155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.820 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds