Wall clock time and date at job start Tue Mar 31 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48499 * 109.46632 * 269.99700 * 3 2 1 5 5 H 1.48502 * 109.46835 * 29.99578 * 3 2 1 6 6 H 1.48502 * 109.47213 * 149.99866 * 3 2 1 7 7 C 1.38813 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00229 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99803 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.46750 * 204.99914 * 10 9 7 12 12 C 1.53000 * 109.47079 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47214 * 60.00089 * 12 11 10 14 14 N 1.46492 * 109.47397 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00241 * 204.99903 * 14 13 12 16 16 O 1.21546 * 119.99771 * 359.97438 * 15 14 13 17 17 C 1.47905 * 120.00477 * 180.02562 * 15 14 13 18 18 C 1.38891 * 121.10644 * 354.16273 * 17 15 14 19 19 C 1.39281 * 119.57620 * 179.81689 * 18 17 15 20 20 N 1.30994 * 121.88415 * 0.45793 * 19 18 17 21 21 C 1.33540 * 121.82363 * 359.78081 * 20 19 18 22 22 C 1.40718 * 120.96753 * 179.97438 * 21 20 19 23 23 C 1.36057 * 119.73833 * 180.02562 * 22 21 20 24 24 C 1.39346 * 121.05871 * 0.02562 * 23 22 21 25 25 C 1.36251 * 120.84046 * 0.02562 * 24 23 22 26 26 C 1.40106 * 119.63959 * 359.95747 * 25 24 23 27 27 C 1.53001 * 109.46876 * 300.00480 * 13 12 11 28 28 C 1.53000 * 109.47591 * 59.99750 * 27 13 12 29 29 H 0.97001 * 119.99762 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99638 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47092 * 325.00448 * 10 9 7 32 32 H 1.08999 * 109.47580 * 60.00390 * 11 10 9 33 33 H 1.09003 * 109.47572 * 300.00129 * 11 10 9 34 34 H 1.08994 * 109.47720 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.47006 * 300.00454 * 12 11 10 36 36 H 1.08999 * 109.47076 * 59.99806 * 13 12 11 37 37 H 0.97000 * 120.00366 * 25.00224 * 14 13 12 38 38 H 1.07994 * 120.21497 * 359.97438 * 18 17 15 39 39 H 1.07996 * 119.05820 * 180.23795 * 19 18 17 40 40 H 1.08004 * 120.12854 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.46726 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.58466 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.18145 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47209 * 299.99552 * 27 13 12 45 45 H 1.09007 * 109.47286 * 179.97438 * 27 13 12 46 46 H 1.08994 * 109.47266 * 179.97438 * 28 27 13 47 47 H 1.09003 * 109.47006 * 59.99678 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.1807 -4.7521 -0.6090 12 6 1.9453 -6.0773 -0.6085 13 6 2.3087 -6.4559 0.8287 14 7 3.0413 -7.7245 0.8292 15 6 3.0323 -8.5075 1.9261 16 8 2.4165 -8.1609 2.9151 17 6 3.7724 -9.7880 1.9269 18 6 4.3843 -10.2639 0.7744 19 6 5.0764 -11.4719 0.8121 20 7 5.1631 -12.1858 1.9070 21 6 4.5960 -11.7930 3.0505 22 6 4.7001 -12.5744 4.2161 23 6 4.1120 -12.1505 5.3675 24 6 3.4045 -10.9509 5.4140 25 6 3.2819 -10.1688 4.3051 26 6 3.8750 -10.5743 3.1023 27 6 3.1859 -5.3606 1.4384 28 6 2.4212 -4.0353 1.4378 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 2.9686 -3.5507 -0.5888 32 1 0.9214 -4.4823 -1.6328 33 1 0.2699 -4.8583 -0.0196 34 1 1.3203 -6.8577 -1.0423 35 1 2.8563 -5.9714 -1.1977 36 1 1.3978 -6.5618 1.4179 37 1 3.5331 -8.0009 0.0402 38 1 4.3259 -9.6995 -0.1445 39 1 5.5522 -11.8322 -0.0879 40 1 5.2445 -13.5069 4.1968 41 1 4.1943 -12.7539 6.2595 42 1 2.9475 -10.6371 6.3409 43 1 2.7315 -9.2409 4.3533 44 1 4.0968 -5.2546 0.8492 45 1 3.4444 -5.6300 2.4625 46 1 3.0460 -3.2552 1.8725 47 1 1.5103 -4.1413 2.0270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026524313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:30 Heat of formation + Delta-G solvation = 24.312755 kcal Electronic energy + Delta-G solvation = -28239.683377 eV Core-core repulsion = 24386.969886 eV Total energy + Delta-G solvation = -3852.713491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45641 -39.86869 -38.03700 -37.44201 -35.03731 -33.88667 -33.04570 -30.99252 -30.81751 -30.46769 -30.10161 -27.53039 -25.35469 -23.94900 -23.71616 -22.92007 -22.41801 -21.19866 -20.81041 -19.58304 -18.49433 -17.93889 -17.69394 -17.01818 -16.24744 -15.88968 -15.42321 -15.26464 -15.06788 -14.82349 -14.49863 -14.24097 -14.06152 -13.82795 -13.60854 -13.55708 -13.45504 -13.06664 -12.60134 -12.13815 -12.10251 -11.98280 -11.86729 -11.71757 -11.46202 -11.14025 -10.85747 -10.83507 -10.79289 -10.72800 -10.50050 -10.21288 -10.15080 -9.81631 -9.66456 -9.52052 -9.17349 -9.15442 -8.87289 -8.59039 -6.95587 -5.76696 -3.05307 -0.26566 0.41827 1.39494 2.44589 2.76314 2.85611 3.42878 3.48199 3.49870 3.78577 3.86080 4.14238 4.23415 4.35497 4.48692 4.58385 4.73083 4.79180 4.87692 4.96774 4.97914 5.15778 5.20507 5.23355 5.38994 5.48442 5.53762 5.60780 5.65626 5.67594 5.73515 5.81843 5.82180 5.96635 5.97946 6.11345 6.15603 6.18970 6.24383 6.28280 6.41667 6.50646 6.54315 6.59362 6.68402 6.95446 7.11972 7.21650 7.46050 7.69865 7.91201 8.42157 9.53129 10.11466 10.45837 11.46003 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.002014 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.470075 B =13897.419303 C =14411.958775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.144 3.856 14 N -0.713 5.713 15 C 0.559 3.441 16 O -0.522 6.522 17 C -0.067 4.067 18 C -0.141 4.141 19 C 0.125 3.875 20 N -0.459 5.459 21 C 0.123 3.877 22 C -0.101 4.101 23 C -0.096 4.096 24 C -0.118 4.118 25 C -0.100 4.100 26 C -0.066 4.066 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.398 0.602 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.170 0.830 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -27.206 3.465 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.158 4.158 13 C 0.041 3.959 14 N -0.363 5.363 15 C 0.345 3.655 16 O -0.400 6.400 17 C -0.079 4.079 18 C -0.161 4.161 19 C -0.047 4.047 20 N -0.167 5.167 21 C 0.002 3.998 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.069 4.069 27 C -0.163 4.163 28 C -0.173 4.173 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.187 0.813 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.298 -27.578 4.257 29.413 hybrid contribution 0.044 1.557 -0.420 1.613 sum 9.342 -26.021 3.836 27.912 Atomic orbital electron populations 1.69660 1.05088 1.25613 1.57782 1.24745 0.95517 0.97680 1.03132 0.86211 0.78668 0.83969 0.77475 1.21768 1.21800 1.20800 1.19235 0.90953 0.84146 1.42515 0.91236 1.42429 1.05793 0.99781 1.88567 1.20239 0.94300 0.86004 0.92760 1.21753 0.98948 0.93332 1.01895 1.21761 1.00955 0.98453 0.94601 1.21222 0.95505 0.81253 0.97908 1.46099 1.52693 1.21849 1.15649 1.18045 0.80710 0.83197 0.83558 1.90618 1.43503 1.73346 1.32484 1.20427 0.98230 0.95152 0.94067 1.22442 0.97511 0.97903 0.98291 1.22912 0.94876 0.90516 0.96421 1.67805 1.17501 1.32766 0.98678 1.18898 0.95604 0.92439 0.92890 1.20784 1.00553 0.99856 0.90724 1.21021 0.96253 0.96364 0.97980 1.21144 0.98797 0.94565 0.99110 1.22111 0.97211 1.01715 0.90756 1.18686 0.99100 0.94820 0.94264 1.21909 0.98590 0.95359 1.00474 1.22230 0.99789 0.94387 1.00887 0.93540 0.78293 0.93585 0.91247 0.91900 0.91764 0.91457 0.89061 0.76663 0.83932 0.81666 0.84594 0.85181 0.85233 0.81274 0.92208 0.92290 0.91716 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.50 9.93 -15.05 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.80 5.12 -53.43 -0.27 -18.07 16 10 C 0.18 3.34 2.77 -67.93 -0.19 3.15 16 11 C -0.12 -1.83 5.39 -26.74 -0.14 -1.97 16 12 C -0.12 -1.35 5.39 -26.73 -0.14 -1.50 16 13 C 0.14 1.76 2.45 -67.93 -0.17 1.59 16 14 N -0.71 -7.08 5.03 -54.73 -0.28 -7.36 16 15 C 0.56 6.65 7.72 -12.30 -0.09 6.56 16 16 O -0.52 -7.81 13.19 5.33 0.07 -7.74 16 17 C -0.07 -0.71 5.94 -104.34 -0.62 -1.33 16 18 C -0.14 -1.04 9.60 -38.95 -0.37 -1.42 16 19 C 0.12 0.95 11.14 -17.52 -0.20 0.75 16 20 N -0.46 -4.73 10.30 -11.00 -0.11 -4.84 16 21 C 0.12 1.35 6.61 -84.87 -0.56 0.79 16 22 C -0.10 -0.91 9.98 -39.43 -0.39 -1.31 16 23 C -0.10 -0.76 9.94 -39.95 -0.40 -1.16 16 24 C -0.12 -1.07 9.96 -39.88 -0.40 -1.46 16 25 C -0.10 -1.14 9.25 -39.60 -0.37 -1.51 16 26 C -0.07 -0.76 5.76 -106.52 -0.61 -1.38 16 27 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 28 C -0.13 -2.32 5.50 -26.73 -0.15 -2.46 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 10.04 7.80 -40.82 -0.32 9.73 16 31 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 37 H 0.40 2.71 6.77 -40.82 -0.28 2.43 16 38 H 0.14 0.57 6.55 -52.49 -0.34 0.23 16 39 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.17 2.17 4.98 -52.49 -0.26 1.91 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -33.32 381.16 -10.97 -44.29 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.63 Total: 9.73 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -5.19 Total: -11.70 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.06 Total: -57.61 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.32 -10.97 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026524313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.604 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds