Wall clock time and date at job start Tue Mar 31 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.46877 * 269.99908 * 3 2 1 5 5 H 1.48495 * 109.46921 * 29.99854 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99677 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21563 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.47765 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.40622 * 119.80299 * 0.02562 * 17 15 14 19 19 C 1.35698 * 120.91835 * 179.97438 * 18 17 15 20 20 C 1.40758 * 120.11407 * 359.97438 * 19 18 17 21 21 N 1.33650 * 120.82595 * 180.02562 * 20 19 18 22 22 C 1.31118 * 121.39244 * 180.02562 * 21 20 19 23 23 C 1.39313 * 121.76880 * 359.95686 * 22 21 20 24 24 C 1.36587 * 119.90434 * 0.02562 * 23 22 21 25 25 C 1.40890 * 118.15920 * 359.97438 * 24 23 22 26 26 C 1.38551 * 119.80041 * 179.72887 * 17 15 14 27 27 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 28 28 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 29 29 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 32 32 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 38 38 H 1.07996 * 119.54550 * 359.95438 * 18 17 15 39 39 H 1.08003 * 119.94441 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.11989 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.05264 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.91625 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.30150 * 0.02562 * 26 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.46716 * 60.00091 * 27 13 12 46 46 H 1.09002 * 109.47153 * 179.97438 * 28 10 9 47 47 H 1.09001 * 109.47289 * 299.99924 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0500 -6.7954 3.8780 17 6 -2.1951 -6.3514 4.3469 18 6 -3.3623 -5.6691 3.9604 19 6 -4.5082 -5.7860 4.6777 20 6 -4.5426 -6.5989 5.8263 21 7 -5.6636 -6.7247 6.5430 22 6 -5.7079 -7.4784 7.6150 23 6 -4.5936 -8.1856 8.0610 24 6 -3.4151 -8.1025 7.3754 25 6 -3.3715 -7.2916 6.2241 26 6 -2.1970 -7.1635 5.4695 27 6 1.1451 -4.1838 2.2669 28 6 2.4229 -4.0350 1.4385 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.9682 -3.5508 -0.5885 32 1 1.7251 -5.6964 -0.6064 33 1 0.9203 -4.4829 -1.6305 34 1 -0.6424 -3.9571 0.2215 35 1 -0.7225 -5.6820 -0.2117 36 1 0.8124 -6.2233 1.6584 37 1 -1.7625 -4.9523 2.1878 38 1 -3.3464 -5.0429 3.0806 39 1 -5.3955 -5.2545 4.3667 40 1 -6.6332 -7.5533 8.1669 41 1 -4.6611 -8.7980 8.9480 42 1 -2.5410 -8.6433 7.7068 43 1 -1.3009 -7.6903 5.7626 44 1 1.4055 -4.4534 3.2905 45 1 0.6001 -3.2398 2.2669 46 1 2.9675 -4.9792 1.4386 47 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026553184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:33 Heat of formation + Delta-G solvation = 19.789531 kcal Electronic energy + Delta-G solvation = -28372.567854 eV Core-core repulsion = 24519.658221 eV Total energy + Delta-G solvation = -3852.909633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21457 -39.93231 -38.19117 -36.86875 -34.74300 -33.84457 -32.89649 -31.26283 -30.39809 -30.28101 -30.03949 -27.69965 -25.08969 -24.17836 -23.58155 -22.55232 -22.23768 -21.71945 -20.71832 -18.98771 -18.30328 -17.87950 -17.25612 -17.21740 -16.16396 -15.96223 -15.12353 -14.83517 -14.81945 -14.52926 -14.43923 -14.29824 -14.02690 -13.77658 -13.72946 -13.47862 -13.42127 -12.87364 -12.43741 -12.27426 -12.04744 -11.87875 -11.80068 -11.69780 -11.63355 -10.95572 -10.93758 -10.80223 -10.69606 -10.37116 -10.18044 -10.13164 -9.87879 -9.81204 -9.67563 -9.51560 -9.18367 -8.90350 -8.79782 -8.58148 -6.93036 -5.76665 -3.03575 -0.09096 0.33461 1.58533 2.18562 3.13941 3.20471 3.43485 3.49392 3.50328 3.81167 3.89546 4.22665 4.32446 4.46941 4.55164 4.60618 4.68265 4.78681 4.85082 5.08913 5.11947 5.22286 5.40128 5.43287 5.54156 5.57929 5.59814 5.67740 5.71698 5.78475 5.83462 5.92570 5.96855 5.98401 6.04928 6.10299 6.13338 6.19403 6.33728 6.41022 6.49986 6.60391 6.68327 6.78916 6.90750 7.04331 7.09986 7.52230 7.56242 7.72027 8.21789 8.43200 9.54496 10.12956 10.47838 11.46343 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002304 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.043890 B =12149.694325 C =13040.733710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.124 4.124 13 C 0.149 3.851 14 N -0.714 5.714 15 C 0.557 3.443 16 O -0.539 6.539 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.097 4.097 20 C 0.142 3.858 21 N -0.477 5.477 22 C 0.138 3.862 23 C -0.182 4.182 24 C -0.046 4.046 25 C -0.114 4.114 26 C -0.028 4.028 27 C -0.118 4.118 28 C -0.130 4.130 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.399 0.601 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 -18.519 12.246 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.046 3.954 14 N -0.364 5.364 15 C 0.343 3.657 16 O -0.418 6.418 17 C -0.132 4.132 18 C -0.094 4.094 19 C -0.115 4.115 20 C 0.020 3.980 21 N -0.185 5.185 22 C -0.034 4.034 23 C -0.202 4.202 24 C -0.072 4.072 25 C -0.116 4.116 26 C -0.048 4.048 27 C -0.157 4.157 28 C -0.171 4.171 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.951 -18.273 12.071 24.055 hybrid contribution 0.443 0.829 0.313 0.991 sum -9.509 -17.444 12.385 23.411 Atomic orbital electron populations 1.69638 1.05038 1.25522 1.58210 1.24693 0.95490 0.97540 1.03329 0.86230 0.78688 0.84091 0.77447 1.21843 1.21897 1.20864 1.19259 0.91013 0.84226 1.42001 0.91276 1.42464 1.05665 0.99616 1.88502 1.20259 0.94324 0.86423 0.92903 1.21723 0.95755 0.98924 0.99216 1.21749 0.98980 1.01968 0.93476 1.21109 0.84507 0.99748 0.90054 1.46095 1.15143 1.47961 1.27246 1.18135 0.87539 0.79237 0.80746 1.90767 1.34100 1.47373 1.69553 1.20044 0.94397 1.00964 0.97769 1.21023 0.91558 0.97371 0.99419 1.20703 0.98984 0.98411 0.93441 1.19021 0.88585 0.95411 0.94940 1.68084 1.26524 1.17445 1.06477 1.23048 0.98344 0.90308 0.91733 1.21910 0.94052 1.02195 1.02030 1.21583 0.98609 0.94621 0.92352 1.18813 0.95011 1.00307 0.97475 1.21447 0.96914 0.94580 0.91842 1.21746 0.96976 0.98789 0.98183 1.22102 0.96392 0.99688 0.98901 0.93634 0.78220 0.93341 0.92294 0.91439 0.90408 0.92317 0.89962 0.76533 0.84567 0.83987 0.82229 0.84277 0.84000 0.83671 0.93115 0.90339 0.93674 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.43 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.03 4.28 -53.42 -0.23 -17.26 16 10 C 0.17 3.26 3.10 -67.93 -0.21 3.05 16 11 C -0.12 -1.83 5.61 -26.73 -0.15 -1.98 16 12 C -0.12 -1.80 5.22 -26.73 -0.14 -1.94 16 13 C 0.15 2.24 2.45 -67.93 -0.17 2.08 16 14 N -0.71 -9.53 5.03 -54.78 -0.28 -9.81 16 15 C 0.56 7.96 7.73 -12.37 -0.10 7.87 16 16 O -0.54 -9.37 15.97 5.31 0.08 -9.29 16 17 C -0.13 -1.54 5.87 -104.99 -0.62 -2.16 16 18 C -0.07 -0.75 9.44 -39.59 -0.37 -1.12 16 19 C -0.10 -1.00 9.95 -39.54 -0.39 -1.39 16 20 C 0.14 1.59 6.61 -84.78 -0.56 1.03 16 21 N -0.48 -5.13 10.33 -10.92 -0.11 -5.24 16 22 C 0.14 1.06 11.15 -17.46 -0.19 0.87 16 23 C -0.18 -1.17 10.03 -39.78 -0.40 -1.57 16 24 C -0.05 -0.35 9.89 -39.17 -0.39 -0.74 16 25 C -0.11 -1.18 5.74 -106.82 -0.61 -1.80 16 26 C -0.03 -0.31 9.35 -38.74 -0.36 -0.67 16 27 C -0.12 -2.08 5.34 -26.73 -0.14 -2.22 16 28 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.38 9.47 6.06 -40.82 -0.25 9.23 16 31 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.27 6.51 -51.93 -0.34 0.93 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 37 H 0.40 4.46 6.59 -40.82 -0.27 4.19 16 38 H 0.14 1.11 6.35 -52.49 -0.33 0.78 16 39 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.15 1.52 7.62 -52.49 -0.40 1.12 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.59 7.60 -51.93 -0.39 1.19 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -33.05 381.63 -10.85 -43.90 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.57 Total: 11.60 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -5.20 Total: -10.15 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.11 Total: -59.02 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.05 -10.85 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026553184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.686 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds