Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.46877 * 269.99908 * 3 2 1 5 5 H 1.48495 * 109.46921 * 29.99854 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99677 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21563 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.47765 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.40622 * 119.80299 * 0.02562 * 17 15 14 19 19 C 1.35698 * 120.91835 * 179.97438 * 18 17 15 20 20 C 1.40758 * 120.11407 * 359.97438 * 19 18 17 21 21 N 1.33650 * 120.82595 * 180.02562 * 20 19 18 22 22 C 1.31118 * 121.39244 * 180.02562 * 21 20 19 23 23 C 1.39313 * 121.76880 * 359.95686 * 22 21 20 24 24 C 1.36587 * 119.90434 * 0.02562 * 23 22 21 25 25 C 1.40890 * 118.15920 * 359.97438 * 24 23 22 26 26 C 1.38551 * 119.80041 * 179.72887 * 17 15 14 27 27 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 28 28 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 29 29 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 32 32 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 38 38 H 1.07996 * 119.54550 * 359.95438 * 18 17 15 39 39 H 1.08003 * 119.94441 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.11989 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.05264 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.91625 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.30150 * 0.02562 * 26 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.46716 * 60.00091 * 27 13 12 46 46 H 1.09002 * 109.47153 * 179.97438 * 28 10 9 47 47 H 1.09001 * 109.47289 * 299.99924 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0500 -6.7954 3.8780 17 6 -2.1951 -6.3514 4.3469 18 6 -3.3623 -5.6691 3.9604 19 6 -4.5082 -5.7860 4.6777 20 6 -4.5426 -6.5989 5.8263 21 7 -5.6636 -6.7247 6.5430 22 6 -5.7079 -7.4784 7.6150 23 6 -4.5936 -8.1856 8.0610 24 6 -3.4151 -8.1025 7.3754 25 6 -3.3715 -7.2916 6.2241 26 6 -2.1970 -7.1635 5.4695 27 6 1.1451 -4.1838 2.2669 28 6 2.4229 -4.0350 1.4385 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.9682 -3.5508 -0.5885 32 1 1.7251 -5.6964 -0.6064 33 1 0.9203 -4.4829 -1.6305 34 1 -0.6424 -3.9571 0.2215 35 1 -0.7225 -5.6820 -0.2117 36 1 0.8124 -6.2233 1.6584 37 1 -1.7625 -4.9523 2.1878 38 1 -3.3464 -5.0429 3.0806 39 1 -5.3955 -5.2545 4.3667 40 1 -6.6332 -7.5533 8.1669 41 1 -4.6611 -8.7980 8.9480 42 1 -2.5410 -8.6433 7.7068 43 1 -1.3009 -7.6903 5.7626 44 1 1.4055 -4.4534 3.2905 45 1 0.6001 -3.2398 2.2669 46 1 2.9675 -4.9792 1.4386 47 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026553184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = -0.324131 kcal Electronic energy + Delta-G solvation = -28373.440048 eV Core-core repulsion = 24519.658221 eV Total energy + Delta-G solvation = -3853.781827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97827 -41.02591 -39.50337 -37.71627 -36.19160 -34.68005 -34.45069 -32.46910 -31.64316 -31.44786 -31.10921 -29.19575 -26.03669 -25.46953 -24.88138 -23.62873 -23.36633 -22.82310 -21.83594 -20.28620 -19.30716 -19.16967 -18.80506 -18.00226 -17.11161 -16.93351 -16.55576 -16.21576 -16.00827 -15.55073 -15.45140 -15.33732 -15.22876 -15.05942 -14.98770 -14.48993 -14.45165 -14.01768 -13.67618 -13.54844 -13.28568 -13.10056 -13.04299 -12.85362 -12.72435 -12.61664 -12.47861 -12.20872 -12.07213 -11.88862 -11.67930 -11.62277 -11.24283 -11.21104 -11.02278 -10.77780 -10.53009 -10.12098 -9.83222 -9.36160 -8.91549 -7.89992 -5.14783 -0.82911 -0.36786 0.85288 1.37736 1.47848 1.48046 1.56004 2.07342 2.27444 2.58957 3.06196 3.25221 3.43332 3.53010 3.57932 3.70686 3.81084 3.92478 3.95013 3.98395 4.03252 4.07248 4.16629 4.28084 4.39526 4.44641 4.50574 4.62906 4.67897 4.69507 4.74454 4.82569 4.86955 4.94444 5.00280 5.01863 5.14133 5.16736 5.23136 5.24913 5.32608 5.33185 5.45777 5.49041 5.55897 5.62656 5.63716 5.73591 6.34038 6.48454 6.86944 7.12398 7.40878 8.19698 8.43486 9.33441 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002304 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.043890 B =12149.694325 C =13040.733710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.963 3.037 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.164 3.836 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.159 3.841 14 N -0.708 5.708 15 C 0.558 3.442 16 O -0.575 6.575 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.105 4.105 20 C 0.123 3.877 21 N -0.510 5.510 22 C 0.139 3.861 23 C -0.171 4.171 24 C -0.053 4.053 25 C -0.130 4.130 26 C -0.027 4.027 27 C -0.109 4.109 28 C -0.124 4.124 29 H 0.248 0.752 30 H 0.376 0.624 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.410 0.590 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -20.457 13.278 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.793 3.207 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.369 5.369 10 C 0.055 3.945 11 C -0.149 4.149 12 C -0.153 4.153 13 C 0.055 3.945 14 N -0.359 5.359 15 C 0.346 3.654 16 O -0.456 6.456 17 C -0.151 4.151 18 C -0.094 4.094 19 C -0.123 4.123 20 C 0.002 3.998 21 N -0.219 5.219 22 C -0.033 4.033 23 C -0.190 4.190 24 C -0.078 4.078 25 C -0.132 4.132 26 C -0.046 4.046 27 C -0.148 4.148 28 C -0.164 4.164 29 H 0.057 0.943 30 H 0.210 0.790 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.247 0.753 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.210 0.790 41 H 0.196 0.804 42 H 0.184 0.816 43 H 0.165 0.835 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.514 -20.233 13.095 26.294 hybrid contribution 0.584 1.303 0.145 1.436 sum -9.930 -18.930 13.240 25.144 Atomic orbital electron populations 1.69774 1.06223 1.25640 1.60178 1.25387 0.96303 1.00473 1.04555 0.85289 0.77684 0.80459 0.77263 1.21604 1.22564 1.20024 1.19592 0.91277 0.85539 1.39892 0.91189 1.42610 1.05505 1.00448 1.88315 1.20499 0.94550 0.85810 0.93617 1.21661 0.95749 0.98689 0.98821 1.21669 0.98735 1.01899 0.93004 1.20906 0.84779 0.98515 0.90323 1.45996 1.15059 1.47831 1.26982 1.18469 0.87840 0.78466 0.80596 1.90736 1.35509 1.48902 1.70471 1.19924 0.93966 1.02810 0.98442 1.21108 0.90991 0.97356 0.99951 1.20882 0.99312 0.98599 0.93540 1.19273 0.89232 0.95820 0.95426 1.68126 1.26524 1.19227 1.07975 1.23754 1.00112 0.88753 0.90666 1.22337 0.92804 1.01338 1.02547 1.21957 1.00249 0.94163 0.91462 1.18992 0.94420 1.01233 0.98596 1.21556 0.97364 0.94106 0.91619 1.21613 0.97030 0.98234 0.97928 1.21995 0.96407 1.00134 0.97886 0.94279 0.79029 0.93765 0.89335 0.91528 0.92435 0.89372 0.89767 0.75285 0.83088 0.83005 0.79030 0.80434 0.81611 0.83545 0.94060 0.93498 0.91020 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.92 13.06 21.65 0.28 -57.63 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.96 46.30 29.55 68.60 2.03 48.33 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.23 -12.56 9.93 84.03 0.83 -11.73 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -34.84 4.28 -322.94 -1.38 -36.22 16 10 C 0.16 6.16 3.10 44.99 0.14 6.29 16 11 C -0.11 -3.25 5.61 30.60 0.17 -3.08 16 12 C -0.12 -3.18 5.22 30.59 0.16 -3.02 16 13 C 0.16 4.65 2.45 44.99 0.11 4.77 16 14 N -0.71 -18.74 5.03 -445.49 -2.24 -20.98 16 15 C 0.56 16.03 7.73 86.76 0.67 16.71 16 16 O -0.57 -20.13 15.97 -3.92 -0.06 -20.19 16 17 C -0.15 -3.58 5.87 -20.10 -0.12 -3.70 16 18 C -0.07 -1.51 9.44 22.26 0.21 -1.30 16 19 C -0.10 -2.16 9.95 22.30 0.22 -1.94 16 20 C 0.12 2.71 6.61 40.35 0.27 2.98 16 21 N -0.51 -10.36 10.33 -188.46 -1.95 -12.30 16 22 C 0.14 1.77 11.15 85.06 0.95 2.72 16 23 C -0.17 -1.63 10.03 22.14 0.22 -1.41 16 24 C -0.05 -0.70 9.89 22.53 0.22 -0.48 16 25 C -0.13 -2.61 5.74 -21.29 -0.12 -2.73 16 26 C -0.03 -0.59 9.35 22.82 0.21 -0.38 16 27 C -0.11 -3.89 5.34 30.60 0.16 -3.72 16 28 C -0.12 -4.41 5.61 30.60 0.17 -4.24 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.38 19.01 6.06 -92.71 -0.56 18.44 16 31 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.86 6.51 -2.39 -0.02 1.85 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 37 H 0.41 9.05 6.59 -92.71 -0.61 8.44 16 38 H 0.15 2.45 6.35 -2.91 -0.02 2.43 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.15 3.09 7.62 -2.91 -0.02 3.07 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 1.96 7.60 -2.39 -0.02 1.94 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.07 381.63 1.46 -71.61 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -0.17 Total: 35.45 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.95 Total: -8.06 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.29 Total: -127.13 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.07 1.46 -71.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026553184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.282 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds