Wall clock time and date at job start Tue Mar 31 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99995 * 2 1 4 4 H 1.48503 * 109.46944 * 270.00131 * 3 2 1 5 5 H 1.48502 * 109.46747 * 29.99831 * 3 2 1 6 6 H 1.48502 * 109.46966 * 150.00194 * 3 2 1 7 7 C 1.38811 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00293 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99831 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46656 * 85.00396 * 10 9 7 12 12 C 1.53002 * 109.47449 * 59.99753 * 11 10 9 13 13 C 1.53006 * 109.46968 * 59.99595 * 12 11 10 14 14 N 1.46499 * 109.46996 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99602 * 205.00532 * 14 13 12 16 16 O 1.21580 * 120.00339 * 359.97438 * 15 14 13 17 17 C 1.47567 * 119.99762 * 179.97438 * 15 14 13 18 18 C 1.38713 * 120.43480 * 354.11674 * 17 15 14 19 19 C 1.38996 * 120.74980 * 179.77001 * 18 17 15 20 20 C 1.36345 * 121.19754 * 0.48811 * 19 18 17 21 21 C 1.40352 * 119.92410 * 359.76785 * 20 19 18 22 22 C 1.40683 * 122.10272 * 180.02562 * 21 20 19 23 23 C 1.36267 * 118.66851 * 179.97438 * 22 21 20 24 24 N 1.32511 * 121.83662 * 0.02562 * 23 22 21 25 25 C 1.31317 * 122.72619 * 359.95025 * 24 23 22 26 26 C 1.40136 * 119.91214 * 0.05247 * 25 24 23 27 27 C 1.53003 * 109.47186 * 300.00134 * 13 12 11 28 28 C 1.53001 * 109.46789 * 60.00266 * 27 13 12 29 29 H 0.96998 * 119.99955 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99466 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47375 * 325.00301 * 10 9 7 32 32 H 1.09000 * 109.47422 * 299.99604 * 11 10 9 33 33 H 1.08999 * 109.47267 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.46914 * 300.00251 * 12 11 10 35 35 H 1.09001 * 109.47276 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.46768 * 60.00566 * 13 12 11 37 37 H 0.96994 * 120.00371 * 24.99831 * 14 13 12 38 38 H 1.07999 * 119.62022 * 359.97438 * 18 17 15 39 39 H 1.08003 * 119.40358 * 180.23923 * 19 18 17 40 40 H 1.07990 * 120.03941 * 179.74930 * 20 19 18 41 41 H 1.07991 * 120.66543 * 359.97438 * 22 21 20 42 42 H 1.07996 * 119.08110 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.04088 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46554 * 179.97438 * 27 13 12 45 45 H 1.08999 * 109.47094 * 299.99912 * 27 13 12 46 46 H 1.08999 * 109.47591 * 59.99951 * 28 27 13 47 47 H 1.09001 * 109.46788 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 4.2578 -2.9756 -1.4381 12 6 5.0257 -1.9432 -2.2660 13 6 6.4132 -1.7311 -1.6568 14 7 7.1483 -0.7421 -2.4492 15 6 8.4961 -0.7454 -2.4486 16 8 9.1018 -1.5686 -1.7901 17 6 9.2366 0.2504 -3.2471 18 6 8.5600 1.1147 -4.0953 19 6 9.2505 2.0582 -4.8469 20 6 10.6089 2.1566 -4.7815 21 6 11.3334 1.2982 -3.9401 22 6 12.7350 1.3600 -3.8368 23 6 13.3676 0.4928 -2.9973 24 7 12.6995 -0.4004 -2.2820 25 6 11.3920 -0.5132 -2.3289 26 6 10.6471 0.3323 -3.1620 27 6 6.2676 -1.2263 -0.2198 28 6 5.4996 -2.2587 0.6080 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 -0.0014 31 1 3.5650 -3.2063 0.5887 32 1 3.2693 -3.1267 -1.8720 33 1 4.8031 -3.9193 -1.4382 34 1 4.4807 -0.9993 -2.2658 35 1 5.1298 -2.3030 -3.2896 36 1 6.9582 -2.6750 -1.6569 37 1 6.6652 -0.0851 -2.9742 38 1 7.4843 1.0558 -4.1700 39 1 8.7015 2.7229 -5.4974 40 1 11.1267 2.8940 -5.3768 41 1 13.2984 2.0803 -4.4113 42 1 14.4434 0.5348 -2.9125 43 1 10.8915 -1.2569 -1.7266 44 1 7.2560 -1.0756 0.2142 45 1 5.7226 -0.2823 -0.2198 46 1 6.0446 -3.2027 0.6080 47 1 5.3955 -1.8989 1.6316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026586795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:16 Heat of formation + Delta-G solvation = 29.770143 kcal Electronic energy + Delta-G solvation = -28962.250540 eV Core-core repulsion = 25109.773699 eV Total energy + Delta-G solvation = -3852.476841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39666 -39.90488 -38.27769 -37.48994 -34.97279 -33.38681 -32.84999 -31.52464 -30.97048 -30.44054 -29.93890 -28.01738 -25.02851 -23.89931 -23.76702 -23.15216 -22.37940 -21.61248 -20.74030 -18.89277 -18.19153 -17.96334 -17.78687 -17.06344 -16.55404 -16.06926 -15.39358 -15.30696 -15.03495 -14.64892 -14.56991 -14.25049 -14.08106 -14.00825 -13.66209 -13.53406 -13.05168 -12.64454 -12.58663 -12.44197 -12.40498 -12.25991 -12.19276 -11.93394 -11.82445 -11.04080 -10.91361 -10.76905 -10.60752 -10.49888 -10.32082 -10.13049 -10.05765 -9.74315 -9.57304 -9.54501 -9.51680 -9.11980 -8.90808 -8.44240 -7.27897 -5.79440 -3.13927 -0.24690 0.52629 1.30839 2.40677 2.90936 3.01517 3.30567 3.34082 3.40677 3.79650 4.13015 4.20000 4.30880 4.40701 4.50080 4.54998 4.56662 4.70903 4.92530 4.94343 5.04219 5.20547 5.27076 5.34557 5.37066 5.41861 5.50565 5.53026 5.55907 5.62984 5.70465 5.77134 5.81663 5.89757 5.93023 5.94797 6.00891 6.21434 6.26644 6.31604 6.36527 6.47707 6.51299 6.60358 6.72305 6.79476 6.93591 7.33361 7.76034 7.98706 8.01558 8.40297 9.19431 9.91965 10.12563 11.39269 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002763 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.211748 B =10132.156139 C =11040.257760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.177 3.823 11 C -0.129 4.129 12 C -0.119 4.119 13 C 0.146 3.854 14 N -0.713 5.713 15 C 0.560 3.440 16 O -0.532 6.532 17 C -0.099 4.099 18 C -0.079 4.079 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.031 4.031 22 C -0.164 4.164 23 C 0.078 3.922 24 N -0.490 5.490 25 C 0.146 3.854 26 C -0.080 4.080 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.400 0.600 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.201 0.799 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.320 3.057 -11.325 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.067 3.933 11 C -0.170 4.170 12 C -0.157 4.157 13 C 0.043 3.957 14 N -0.362 5.362 15 C 0.347 3.653 16 O -0.411 6.411 17 C -0.104 4.104 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.036 4.036 22 C -0.184 4.184 23 C -0.066 4.066 24 N -0.198 5.198 25 C -0.024 4.024 26 C -0.083 4.083 27 C -0.165 4.165 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.217 0.783 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.083 1.901 -10.326 26.272 hybrid contribution -0.224 2.444 -1.007 2.653 sum 23.859 4.345 -11.333 26.769 Atomic orbital electron populations 1.69691 1.05066 1.25699 1.57850 1.24654 0.95170 0.97021 1.02388 0.86626 0.79326 0.85395 0.77642 1.21211 1.21792 1.20400 1.19106 0.80745 0.94617 1.42401 0.89186 1.42852 1.03819 1.02036 1.90197 1.20226 0.90583 0.89320 0.93146 1.22065 0.99900 0.96386 0.98609 1.21695 0.93496 1.02014 0.98464 1.21191 0.92610 0.91464 0.90452 1.46128 1.05639 1.35451 1.49031 1.18061 0.82440 0.83699 0.81103 1.90565 1.67281 1.39516 1.43748 1.19959 0.92880 0.98131 0.99432 1.21497 1.00405 0.93644 0.94256 1.20933 0.94471 0.98125 0.99008 1.21176 0.94380 0.97831 0.97203 1.18174 0.93993 0.95297 0.96123 1.21877 0.93308 1.01660 1.01530 1.22342 1.00559 0.91258 0.92405 1.67686 1.10102 1.20476 1.21505 1.24640 0.88792 0.95588 0.93335 1.18866 0.92990 0.97680 0.98714 1.21855 1.00245 0.99847 0.94540 1.21786 0.96463 0.98555 0.99295 0.93124 0.80636 0.92399 0.91068 0.93075 0.90554 0.92466 0.89281 0.76507 0.84787 0.84639 0.84659 0.84405 0.83035 0.78305 0.92011 0.91752 0.91757 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.33 27.73 -169.99 -4.71 16.62 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.38 4.08 -53.42 -0.22 -16.59 16 10 C 0.18 3.15 3.10 -67.93 -0.21 2.94 16 11 C -0.13 -2.02 5.61 -26.73 -0.15 -2.17 16 12 C -0.12 -1.67 5.23 -26.73 -0.14 -1.81 16 13 C 0.15 1.94 2.45 -67.93 -0.17 1.78 16 14 N -0.71 -8.28 5.03 -54.84 -0.28 -8.56 16 15 C 0.56 7.10 7.70 -12.46 -0.10 7.00 16 16 O -0.53 -8.05 13.13 5.30 0.07 -7.98 16 17 C -0.10 -1.10 5.90 -104.66 -0.62 -1.71 16 18 C -0.08 -0.66 9.51 -39.13 -0.37 -1.03 16 19 C -0.11 -0.74 9.93 -39.98 -0.40 -1.14 16 20 C -0.09 -0.65 9.79 -39.47 -0.39 -1.03 16 21 C -0.03 -0.30 5.74 -106.84 -0.61 -0.91 16 22 C -0.16 -1.39 9.88 -39.37 -0.39 -1.78 16 23 C 0.08 0.76 11.07 -17.97 -0.20 0.56 16 24 N -0.49 -6.25 10.30 -13.22 -0.14 -6.39 16 25 C 0.15 1.92 10.49 -17.06 -0.18 1.74 16 26 C -0.08 -0.95 5.76 -106.59 -0.61 -1.56 16 27 C -0.13 -1.85 5.32 -26.73 -0.14 -2.00 16 28 C -0.12 -1.85 5.61 -26.73 -0.15 -2.00 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 30 H 0.36 7.84 3.92 -40.82 -0.16 7.68 16 31 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.22 7.60 -51.93 -0.39 0.82 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 37 H 0.40 3.79 6.67 -40.82 -0.27 3.52 16 38 H 0.13 0.84 6.42 -52.49 -0.34 0.50 16 39 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.20 2.81 4.97 -52.49 -0.26 2.55 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.87 373.20 -10.35 -43.22 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.40 Total: 11.67 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -5.08 Total: -9.70 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.15 Total: -59.45 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.07 Total: -7.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.87 -10.35 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026586795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.986 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds