Wall clock time and date at job start Tue Mar 31 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99995 * 2 1 4 4 H 1.48503 * 109.46944 * 270.00131 * 3 2 1 5 5 H 1.48502 * 109.46747 * 29.99831 * 3 2 1 6 6 H 1.48502 * 109.46966 * 150.00194 * 3 2 1 7 7 C 1.38811 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00293 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99831 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46656 * 85.00396 * 10 9 7 12 12 C 1.53002 * 109.47449 * 59.99753 * 11 10 9 13 13 C 1.53006 * 109.46968 * 59.99595 * 12 11 10 14 14 N 1.46499 * 109.46996 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99602 * 205.00532 * 14 13 12 16 16 O 1.21580 * 120.00339 * 359.97438 * 15 14 13 17 17 C 1.47567 * 119.99762 * 179.97438 * 15 14 13 18 18 C 1.38713 * 120.43480 * 354.11674 * 17 15 14 19 19 C 1.38996 * 120.74980 * 179.77001 * 18 17 15 20 20 C 1.36345 * 121.19754 * 0.48811 * 19 18 17 21 21 C 1.40352 * 119.92410 * 359.76785 * 20 19 18 22 22 C 1.40683 * 122.10272 * 180.02562 * 21 20 19 23 23 C 1.36267 * 118.66851 * 179.97438 * 22 21 20 24 24 N 1.32511 * 121.83662 * 0.02562 * 23 22 21 25 25 C 1.31317 * 122.72619 * 359.95025 * 24 23 22 26 26 C 1.40136 * 119.91214 * 0.05247 * 25 24 23 27 27 C 1.53003 * 109.47186 * 300.00134 * 13 12 11 28 28 C 1.53001 * 109.46789 * 60.00266 * 27 13 12 29 29 H 0.96998 * 119.99955 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99466 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47375 * 325.00301 * 10 9 7 32 32 H 1.09000 * 109.47422 * 299.99604 * 11 10 9 33 33 H 1.08999 * 109.47267 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.46914 * 300.00251 * 12 11 10 35 35 H 1.09001 * 109.47276 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.46768 * 60.00566 * 13 12 11 37 37 H 0.96994 * 120.00371 * 24.99831 * 14 13 12 38 38 H 1.07999 * 119.62022 * 359.97438 * 18 17 15 39 39 H 1.08003 * 119.40358 * 180.23923 * 19 18 17 40 40 H 1.07990 * 120.03941 * 179.74930 * 20 19 18 41 41 H 1.07991 * 120.66543 * 359.97438 * 22 21 20 42 42 H 1.07996 * 119.08110 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.04088 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46554 * 179.97438 * 27 13 12 45 45 H 1.08999 * 109.47094 * 299.99912 * 27 13 12 46 46 H 1.08999 * 109.47591 * 59.99951 * 28 27 13 47 47 H 1.09001 * 109.46788 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 4.2578 -2.9756 -1.4381 12 6 5.0257 -1.9432 -2.2660 13 6 6.4132 -1.7311 -1.6568 14 7 7.1483 -0.7421 -2.4492 15 6 8.4961 -0.7454 -2.4486 16 8 9.1018 -1.5686 -1.7901 17 6 9.2366 0.2504 -3.2471 18 6 8.5600 1.1147 -4.0953 19 6 9.2505 2.0582 -4.8469 20 6 10.6089 2.1566 -4.7815 21 6 11.3334 1.2982 -3.9401 22 6 12.7350 1.3600 -3.8368 23 6 13.3676 0.4928 -2.9973 24 7 12.6995 -0.4004 -2.2820 25 6 11.3920 -0.5132 -2.3289 26 6 10.6471 0.3323 -3.1620 27 6 6.2676 -1.2263 -0.2198 28 6 5.4996 -2.2587 0.6080 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 -0.0014 31 1 3.5650 -3.2063 0.5887 32 1 3.2693 -3.1267 -1.8720 33 1 4.8031 -3.9193 -1.4382 34 1 4.4807 -0.9993 -2.2658 35 1 5.1298 -2.3030 -3.2896 36 1 6.9582 -2.6750 -1.6569 37 1 6.6652 -0.0851 -2.9742 38 1 7.4843 1.0558 -4.1700 39 1 8.7015 2.7229 -5.4974 40 1 11.1267 2.8940 -5.3768 41 1 13.2984 2.0803 -4.4113 42 1 14.4434 0.5348 -2.9125 43 1 10.8915 -1.2569 -1.7266 44 1 7.2560 -1.0756 0.2142 45 1 5.7226 -0.2823 -0.2198 46 1 6.0446 -3.2027 0.6080 47 1 5.3955 -1.8989 1.6316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026586795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:15 Heat of formation + Delta-G solvation = 9.055223 kcal Electronic energy + Delta-G solvation = -28963.148806 eV Core-core repulsion = 25109.773699 eV Total energy + Delta-G solvation = -3853.375107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15386 -40.89092 -39.48659 -38.20526 -36.30447 -34.69196 -33.96357 -32.62605 -32.19579 -31.68320 -30.89971 -29.31291 -25.84773 -25.24687 -24.53233 -24.43210 -23.61193 -22.75158 -21.66631 -20.15466 -19.79605 -18.96356 -18.79852 -17.84163 -17.36045 -16.98299 -16.54117 -16.43571 -16.19583 -15.90653 -15.64211 -15.43703 -15.20106 -14.98876 -14.66072 -14.53601 -14.37434 -14.02642 -13.74973 -13.67901 -13.54055 -13.11233 -13.04866 -13.03580 -12.90458 -12.58487 -12.48685 -12.25621 -12.07378 -11.82726 -11.66302 -11.48525 -11.20711 -11.17326 -10.89439 -10.81391 -10.40257 -10.20033 -10.13256 -9.23876 -9.11827 -7.97403 -5.28699 -0.93829 -0.14716 0.55926 1.36783 1.41031 1.48244 1.69136 2.00235 2.20480 2.51086 3.06199 3.34005 3.42971 3.52346 3.66574 3.68315 3.73140 3.80694 3.84477 3.91189 3.92916 4.09083 4.18287 4.27309 4.37634 4.40445 4.54547 4.60599 4.62323 4.67717 4.70180 4.78074 4.78659 4.87639 4.97423 5.03190 5.11895 5.17566 5.22450 5.25353 5.29975 5.32246 5.44761 5.53592 5.59725 5.64874 5.76760 5.85071 6.27289 6.44104 6.98351 7.12504 7.14152 7.91720 8.11037 9.24702 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002763 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.211748 B =10132.156139 C =11040.257760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.067 4.067 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.258 1.258 7 C -0.218 4.218 8 H 0.056 0.944 9 N -0.744 5.744 10 C 0.169 3.831 11 C -0.124 4.124 12 C -0.110 4.110 13 C 0.156 3.844 14 N -0.706 5.706 15 C 0.558 3.442 16 O -0.564 6.564 17 C -0.131 4.131 18 C -0.063 4.063 19 C -0.110 4.110 20 C -0.073 4.073 21 C -0.052 4.052 22 C -0.144 4.144 23 C 0.052 3.948 24 N -0.515 5.515 25 C 0.114 3.886 26 C -0.094 4.094 27 C -0.121 4.121 28 C -0.114 4.114 29 H 0.255 0.745 30 H 0.364 0.636 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.881 5.462 -13.813 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.258 4.258 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.230 1.230 6 H -0.183 1.183 7 C -0.350 4.350 8 H 0.074 0.926 9 N -0.389 5.389 10 C 0.061 3.939 11 C -0.164 4.164 12 C -0.148 4.148 13 C 0.052 3.948 14 N -0.356 5.356 15 C 0.347 3.653 16 O -0.446 6.446 17 C -0.136 4.136 18 C -0.081 4.081 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.057 4.057 22 C -0.163 4.163 23 C -0.092 4.092 24 N -0.223 5.223 25 C -0.056 4.056 26 C -0.097 4.097 27 C -0.160 4.160 28 C -0.153 4.153 29 H 0.064 0.936 30 H 0.198 0.802 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.173 0.827 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.196 0.804 42 H 0.194 0.806 43 H 0.195 0.805 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.690 4.281 -12.830 29.921 hybrid contribution -0.977 1.637 -0.283 1.927 sum 25.713 5.918 -13.113 29.464 Atomic orbital electron populations 1.69882 1.07125 1.26368 1.60504 1.25431 0.95976 1.00961 1.03417 0.85514 0.78419 0.80139 0.78360 1.19621 1.22955 1.18255 1.19049 0.82803 0.93209 1.39890 0.92555 1.42820 1.02108 1.03850 1.90106 1.20456 0.91455 0.87272 0.94721 1.21937 0.99458 0.98197 0.96823 1.21590 0.93268 1.00605 0.99354 1.20947 0.92216 0.91852 0.89776 1.45961 1.05395 1.35363 1.48880 1.18391 0.82479 0.83628 0.80767 1.90561 1.67910 1.40917 1.45176 1.19825 0.92683 0.99599 1.01526 1.21871 1.01555 0.92303 0.92419 1.21369 0.94670 0.97934 0.98860 1.21634 0.94693 0.97029 0.95766 1.18552 0.94876 0.95592 0.96688 1.22320 0.93023 1.00890 1.00039 1.22809 1.01768 0.91542 0.93046 1.67577 1.10238 1.21864 1.22650 1.24326 0.89327 0.96848 0.95064 1.18988 0.93535 0.98179 0.99027 1.21797 0.99731 0.99028 0.95461 1.21701 0.94861 0.99974 0.98749 0.93603 0.80174 0.93813 0.93359 0.90404 0.92203 0.90362 0.89488 0.75154 0.82703 0.81101 0.80969 0.80422 0.80592 0.80520 0.92091 0.92939 0.89478 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.43 13.97 21.65 0.30 -62.12 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.95 44.07 27.73 68.60 1.90 45.97 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.26 -10.96 6.52 99.48 0.65 -10.31 16 7 C -0.22 -11.95 10.41 84.03 0.87 -11.08 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.74 -32.55 4.08 -322.93 -1.32 -33.86 16 10 C 0.17 5.95 3.10 44.99 0.14 6.09 16 11 C -0.12 -3.76 5.61 30.59 0.17 -3.59 16 12 C -0.11 -2.91 5.23 30.60 0.16 -2.75 16 13 C 0.16 3.92 2.45 44.99 0.11 4.03 16 14 N -0.71 -15.31 5.03 -445.67 -2.24 -17.55 16 15 C 0.56 13.97 7.70 86.70 0.67 14.64 16 16 O -0.56 -17.65 13.13 -3.97 -0.05 -17.70 16 17 C -0.13 -2.77 5.90 -19.89 -0.12 -2.89 16 18 C -0.06 -0.85 9.51 22.57 0.21 -0.64 16 19 C -0.11 -1.01 9.93 22.01 0.22 -0.80 16 20 C -0.07 -0.74 9.79 22.34 0.22 -0.52 16 21 C -0.05 -0.88 5.74 -21.30 -0.12 -1.00 16 22 C -0.14 -2.01 9.88 22.41 0.22 -1.79 16 23 C 0.05 0.95 11.07 84.13 0.93 1.89 16 24 N -0.51 -13.55 10.30 -195.73 -2.02 -15.57 16 25 C 0.11 3.14 10.49 85.23 0.89 4.04 16 26 C -0.09 -2.21 5.76 -21.14 -0.12 -2.33 16 27 C -0.12 -3.42 5.32 30.60 0.16 -3.25 16 28 C -0.11 -3.33 5.61 30.60 0.17 -3.16 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.36 15.40 3.92 -92.71 -0.36 15.04 16 31 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.80 7.60 -2.39 -0.02 1.79 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.28 7.58 -2.39 -0.02 2.27 16 37 H 0.41 6.82 6.67 -92.71 -0.62 6.20 16 38 H 0.16 1.34 6.42 -2.91 -0.02 1.33 16 39 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 40 H 0.17 0.44 8.06 -2.92 -0.02 0.42 16 41 H 0.18 0.95 8.06 -2.92 -0.02 0.93 16 42 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.18 5.52 4.97 -2.94 -0.01 5.51 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.60 6.51 -2.39 -0.02 1.59 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.14 373.20 1.81 -74.33 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.03 Total: 33.00 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.26 Total: -6.50 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.27 Total: -129.11 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.97 kcal Total: -76.14 1.81 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026586795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.387 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds