Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46814 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.47199 * 59.99881 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21549 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.47884 * 120.00189 * 180.02562 * 15 14 13 18 18 C 1.40604 * 119.72952 * 0.02562 * 17 15 14 19 19 C 1.35847 * 120.95466 * 179.97438 * 18 17 15 20 20 C 1.40495 * 119.87791 * 359.97438 * 19 18 17 21 21 C 1.40488 * 121.84577 * 180.02562 * 20 19 18 22 22 N 1.31211 * 119.93905 * 179.97438 * 21 20 19 23 23 C 1.32559 * 122.80840 * 0.02562 * 22 21 20 24 24 C 1.36211 * 121.84260 * 359.97438 * 23 22 21 25 25 C 1.40762 * 118.67662 * 0.02562 * 24 23 22 26 26 C 1.38522 * 119.73139 * 179.72871 * 17 15 14 27 27 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 28 28 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 29 29 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 32 32 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 38 38 H 1.08002 * 119.52163 * 0.02562 * 18 17 15 39 39 H 1.08000 * 120.06417 * 180.02562 * 19 18 17 40 40 H 1.07997 * 120.03431 * 359.95600 * 21 20 19 41 41 H 1.08006 * 119.07993 * 179.97438 * 23 22 21 42 42 H 1.08009 * 120.66370 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.36513 * 359.97438 * 26 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.46716 * 60.00091 * 27 13 12 46 46 H 1.09002 * 109.47153 * 179.97438 * 28 10 9 47 47 H 1.09001 * 109.47289 * 299.99924 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0499 -6.7953 3.8779 17 6 -2.1960 -6.3516 4.3476 18 6 -3.3622 -5.6686 3.9597 19 6 -4.5106 -5.7841 4.6762 20 6 -4.5419 -6.5962 5.8222 21 6 -5.7068 -6.7458 6.5932 22 7 -5.6941 -7.5144 7.6565 23 6 -4.6147 -8.1737 8.0533 24 6 -3.4356 -8.0961 7.3758 25 6 -3.3706 -7.2904 6.2233 26 6 -2.1964 -7.1638 5.4697 27 6 1.1451 -4.1838 2.2669 28 6 2.4229 -4.0350 1.4385 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.9682 -3.5508 -0.5885 32 1 1.7251 -5.6964 -0.6064 33 1 0.9203 -4.4829 -1.6305 34 1 -0.6424 -3.9571 0.2215 35 1 -0.7225 -5.6820 -0.2117 36 1 0.8124 -6.2233 1.6584 37 1 -1.7625 -4.9523 2.1878 38 1 -3.3450 -5.0438 3.0789 39 1 -5.3982 -5.2533 4.3649 40 1 -6.6118 -6.2284 6.3111 41 1 -4.6718 -8.7896 8.9387 42 1 -2.5679 -8.6418 7.7159 43 1 -1.3004 -7.6913 5.7621 44 1 1.4055 -4.4534 3.2905 45 1 0.6001 -3.2398 2.2669 46 1 2.9675 -4.9792 1.4386 47 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026587776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = 18.280032 kcal Electronic energy + Delta-G solvation = -28365.725072 eV Core-core repulsion = 24512.749983 eV Total energy + Delta-G solvation = -3852.975090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23703 -39.97475 -38.25353 -37.13488 -34.77721 -33.38501 -32.93987 -31.73393 -30.31758 -30.18443 -29.97472 -27.76960 -25.17605 -24.13484 -23.60418 -22.70182 -22.27004 -21.72426 -20.70909 -19.00380 -18.17926 -17.93018 -17.24644 -17.00612 -16.40770 -15.95262 -15.29387 -15.13717 -14.83141 -14.55072 -14.42384 -14.12880 -14.02998 -13.96032 -13.80325 -13.50514 -13.16927 -12.91402 -12.74443 -12.38480 -12.25847 -11.95509 -11.77953 -11.68540 -11.44937 -10.95951 -10.83551 -10.72314 -10.61265 -10.40801 -10.21020 -10.13770 -9.93570 -9.81065 -9.69180 -9.54180 -9.46195 -8.92837 -8.81294 -8.46142 -6.95079 -5.78914 -3.05755 -0.12606 0.34079 1.49620 2.27076 3.08943 3.19470 3.41572 3.48190 3.49546 3.75155 4.03000 4.14824 4.32056 4.39342 4.52357 4.58765 4.64788 4.79447 4.85512 5.06280 5.19356 5.22015 5.31106 5.35404 5.40256 5.55475 5.56460 5.66262 5.69175 5.75740 5.80719 5.90877 5.93600 5.95769 6.02354 6.07822 6.15851 6.22984 6.30984 6.35992 6.47353 6.57012 6.65595 6.76410 6.88243 7.01705 7.07521 7.51456 7.58322 7.70693 8.16713 8.40979 9.52428 10.10706 10.45589 11.44163 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.002298 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.665268 B =12183.401679 C =13075.450777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.149 3.851 14 N -0.714 5.714 15 C 0.554 3.446 16 O -0.537 6.537 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.090 4.090 20 C -0.099 4.099 21 C 0.144 3.856 22 N -0.485 5.485 23 C 0.071 3.929 24 C -0.144 4.144 25 C -0.034 4.034 26 C -0.046 4.046 27 C -0.118 4.118 28 C -0.130 4.130 29 H 0.253 0.747 30 H 0.383 0.617 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.399 0.601 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -16.834 9.925 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.046 3.954 14 N -0.364 5.364 15 C 0.340 3.660 16 O -0.415 6.415 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.028 4.028 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.164 4.164 25 C -0.040 4.040 26 C -0.065 4.065 27 C -0.157 4.157 28 C -0.171 4.171 29 H 0.063 0.937 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.065 -17.302 10.718 22.706 hybrid contribution 0.545 1.408 -0.530 1.600 sum -9.520 -15.894 10.188 21.144 Atomic orbital electron populations 1.69647 1.05041 1.25405 1.58315 1.24694 0.95497 0.97552 1.03336 0.86160 0.78846 0.84360 0.77112 1.20626 1.21981 1.22011 1.19309 0.91055 0.84209 1.41855 0.91208 1.42471 1.05663 0.99631 1.88492 1.20261 0.94340 0.86416 0.92902 1.21724 0.95740 0.98940 0.99222 1.21747 0.99002 1.01955 0.93447 1.21120 0.84477 0.99782 0.90067 1.46101 1.15173 1.47891 1.27200 1.18200 0.87591 0.79340 0.80825 1.90772 1.34052 1.47234 1.69463 1.20126 0.94284 0.99727 0.97119 1.21051 0.91944 0.98227 0.99932 1.20904 0.98782 0.97598 0.93649 1.19172 0.94834 0.98729 0.97347 1.23273 0.96544 0.93580 0.89380 1.67393 1.30216 1.06849 1.14841 1.22201 0.88186 0.97313 0.99464 1.22005 1.00087 0.99181 0.95109 1.18149 0.93435 0.96833 0.95542 1.21437 0.97229 0.95510 0.92307 1.21746 0.96990 0.98766 0.98190 1.22102 0.96377 0.99716 0.98895 0.93691 0.78235 0.93313 0.92280 0.91419 0.90410 0.92320 0.89943 0.76524 0.84811 0.84141 0.81700 0.82822 0.84094 0.83573 0.93116 0.90335 0.93657 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 13.06 55.49 0.72 -26.46 16 2 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -16.86 4.28 -53.42 -0.23 -17.08 16 10 C 0.17 3.22 3.10 -67.93 -0.21 3.01 16 11 C -0.12 -1.80 5.61 -26.73 -0.15 -1.95 16 12 C -0.12 -1.76 5.22 -26.73 -0.14 -1.90 16 13 C 0.15 2.20 2.45 -67.93 -0.17 2.03 16 14 N -0.71 -9.25 5.03 -54.74 -0.28 -9.53 16 15 C 0.55 7.74 7.73 -12.31 -0.10 7.64 16 16 O -0.54 -9.23 15.97 5.32 0.08 -9.15 16 17 C -0.11 -1.24 5.87 -104.95 -0.62 -1.85 16 18 C -0.09 -0.85 9.44 -39.55 -0.37 -1.22 16 19 C -0.09 -0.71 9.77 -39.59 -0.39 -1.10 16 20 C -0.10 -0.91 5.75 -106.78 -0.61 -1.52 16 21 C 0.14 1.21 11.04 -16.97 -0.19 1.02 16 22 N -0.49 -4.75 10.29 -13.15 -0.14 -4.88 16 23 C 0.07 0.60 11.07 -17.97 -0.20 0.40 16 24 C -0.14 -1.21 9.88 -39.36 -0.39 -1.60 16 25 C -0.03 -0.34 5.74 -106.83 -0.61 -0.96 16 26 C -0.05 -0.50 9.38 -38.78 -0.36 -0.86 16 27 C -0.12 -2.05 5.34 -26.73 -0.14 -2.19 16 28 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.38 9.36 6.06 -40.82 -0.25 9.12 16 31 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.24 6.51 -51.93 -0.34 0.91 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 37 H 0.40 4.28 6.58 -40.82 -0.27 4.01 16 38 H 0.13 0.97 6.34 -52.49 -0.33 0.64 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.15 1.55 7.62 -52.48 -0.40 1.15 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.57 7.60 -51.93 -0.39 1.17 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -32.74 381.51 -10.71 -43.45 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.57 Total: 11.26 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -5.04 Total: -10.41 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.09 Total: -57.95 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.74 -10.71 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026587776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.730 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds