Wall clock time and date at job start Tue Mar 31 2020 23:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99514 * 2 1 4 4 H 1.48507 * 109.47015 * 239.99774 * 3 2 1 5 5 H 1.48504 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47366 * 119.99663 * 3 2 1 7 7 C 1.38803 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00379 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.51159 * 127.33840 * 1.60242 * 9 7 2 11 11 C 1.56022 * 104.20000 * 182.09779 * 10 9 7 12 12 H 1.09003 * 116.24643 * 158.45997 * 11 10 9 13 13 C 1.57086 * 100.41494 * 31.83139 * 11 10 9 14 14 C 1.49283 * 126.94578 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.15347 * 16.74080 * 14 9 7 16 16 C 1.56003 * 105.06449 * 246.86323 * 14 9 7 17 17 N 1.47867 * 105.11683 * 288.88194 * 16 14 9 18 18 C 1.34768 * 126.94874 * 181.92809 * 17 16 14 19 19 O 1.21288 * 120.00360 * 179.68442 * 18 17 16 20 20 C 1.50702 * 119.99830 * 359.68104 * 18 17 16 21 21 C 1.53004 * 109.47023 * 179.97438 * 20 18 17 22 22 N 1.46502 * 109.46846 * 180.02562 * 21 20 18 23 23 C 1.36835 * 125.06346 * 265.02599 * 22 21 20 24 24 C 1.34239 * 109.93059 * 180.24681 * 23 22 21 25 25 C 1.46491 * 106.99536 * 359.59412 * 24 23 22 26 26 C 1.39630 * 134.02980 * 180.11133 * 25 24 23 27 27 C 1.36626 * 119.76309 * 180.31885 * 26 25 24 28 28 C 1.38838 * 120.53011 * 0.02562 * 27 26 25 29 29 C 1.37748 * 120.66146 * 359.95044 * 28 27 26 30 30 C 1.37688 * 125.06402 * 85.00517 * 22 21 20 31 31 H 0.96998 * 120.00658 * 0.02562 * 1 2 3 32 32 H 1.09003 * 111.78625 * 62.96823 * 10 9 7 33 33 H 1.08995 * 109.70900 * 300.20210 * 10 9 7 34 34 H 1.09002 * 112.36601 * 64.06393 * 13 11 10 35 35 H 1.08996 * 112.36364 * 191.41676 * 13 11 10 36 36 H 1.08997 * 110.40521 * 169.92329 * 16 14 9 37 37 H 1.09004 * 110.22031 * 47.74321 * 16 14 9 38 38 H 1.08998 * 109.46702 * 60.00311 * 20 18 17 39 39 H 1.08994 * 109.47364 * 300.00521 * 20 18 17 40 40 H 1.08998 * 109.47056 * 60.00615 * 21 20 18 41 41 H 1.08994 * 109.47548 * 300.00496 * 21 20 18 42 42 H 1.08002 * 125.03193 * 359.97438 * 23 22 21 43 43 H 1.07993 * 126.50200 * 179.71624 * 24 23 22 44 44 H 1.07997 * 120.11802 * 0.29483 * 26 25 24 45 45 H 1.08004 * 119.73805 * 179.97438 * 27 26 25 46 46 H 1.07992 * 119.67010 * 179.97438 * 28 27 26 47 47 H 1.08008 * 120.10695 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1730 -2.5815 -0.0336 11 6 -0.3609 -4.1287 0.0391 12 1 -1.3318 -4.4805 0.3880 13 6 0.8836 -4.5252 0.9119 14 6 1.9105 -3.7616 0.0005 15 1 2.9608 -3.8366 0.2824 16 6 1.5248 -4.3665 -1.3847 17 7 0.0685 -4.6106 -1.3068 18 6 -0.7125 -5.1620 -2.2568 19 8 -1.8995 -5.3091 -2.0560 20 6 -0.1108 -5.5957 -3.5686 21 6 -1.2047 -6.1849 -4.4614 22 7 -0.6196 -6.6071 -5.7365 23 6 -0.5907 -5.8512 -6.8767 24 6 0.0112 -6.5341 -7.8633 25 6 0.4082 -7.8298 -7.3068 26 6 1.0604 -8.9501 -7.8257 27 6 1.2828 -10.0359 -7.0269 28 6 0.8650 -10.0349 -5.7029 29 6 0.2203 -8.9402 -5.1706 30 6 -0.0166 -7.8235 -5.9658 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6106 -2.1900 -0.9519 33 1 -0.6252 -2.1041 0.8356 34 1 0.8334 -4.1101 1.9186 35 1 1.0566 -5.6013 0.9227 36 1 2.0570 -5.3029 -1.5520 37 1 1.7473 -3.6563 -2.1811 38 1 0.6540 -6.3505 -3.3856 39 1 0.3391 -4.7355 -4.0641 40 1 -1.9698 -5.4305 -4.6445 41 1 -1.6542 -7.0453 -3.9657 42 1 -0.9962 -4.8546 -6.9703 43 1 0.1739 -6.1923 -8.8747 44 1 1.3875 -8.9583 -8.8549 45 1 1.7870 -10.9024 -7.4288 46 1 1.0476 -10.9009 -5.0841 47 1 -0.1006 -8.9489 -4.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032773433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:49 Heat of formation + Delta-G solvation = 87.800636 kcal Electronic energy + Delta-G solvation = -28889.200169 eV Core-core repulsion = 25039.239719 eV Total energy + Delta-G solvation = -3849.960450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44237 -40.09668 -38.10059 -37.14087 -33.85815 -33.60333 -31.76462 -31.06762 -29.49773 -29.02453 -28.65831 -28.36014 -25.28506 -24.63747 -23.31887 -22.64348 -21.60824 -20.62541 -20.12058 -19.91827 -18.50085 -17.65647 -16.90117 -16.58009 -16.15412 -15.88408 -15.59216 -15.52941 -14.96599 -14.51443 -14.22136 -14.04491 -13.83730 -13.60822 -13.35292 -13.15354 -12.79168 -12.66441 -12.54513 -12.22226 -11.97580 -11.78519 -11.72504 -11.42155 -11.37732 -11.31238 -11.09279 -10.95061 -10.91745 -10.83124 -10.64495 -10.37162 -10.15022 -9.82077 -9.65595 -9.58568 -8.79798 -8.28416 -8.13632 -7.76449 -7.00771 -5.82935 -3.17055 1.02710 1.52736 2.57376 2.65857 2.87216 3.33352 3.34720 3.38212 3.40061 3.82192 4.35916 4.51605 4.56776 4.67853 4.72069 4.78850 4.90199 5.00536 5.05265 5.11294 5.22567 5.27356 5.31489 5.33723 5.49393 5.50746 5.56399 5.62103 5.65957 5.68669 5.75154 5.82435 5.84287 5.95745 6.07870 6.19470 6.33116 6.35527 6.38680 6.49756 6.51760 6.59988 6.66537 6.70659 7.13228 7.19581 7.32531 7.35524 7.61234 7.94788 7.98692 8.40872 8.99216 9.64177 10.33297 11.30260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002525 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.180460 B =11085.321398 C =11606.827400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.142 3.858 15 H 0.106 0.894 16 C 0.081 3.919 17 N -0.604 5.604 18 C 0.532 3.468 19 O -0.559 6.559 20 C -0.152 4.152 21 C 0.128 3.872 22 N -0.482 5.482 23 C 0.057 3.943 24 C -0.210 4.210 25 C -0.110 4.110 26 C -0.073 4.073 27 C -0.150 4.150 28 C -0.103 4.103 29 C -0.127 4.127 30 C 0.098 3.902 31 H 0.255 0.745 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.168 0.832 43 H 0.145 0.855 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -17.183 -10.865 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.124 0.876 16 C -0.045 4.045 17 N -0.336 5.336 18 C 0.320 3.680 19 O -0.439 6.439 20 C -0.193 4.193 21 C 0.006 3.994 22 N -0.164 5.164 23 C -0.068 4.068 24 C -0.235 4.235 25 C -0.115 4.115 26 C -0.092 4.092 27 C -0.169 4.169 28 C -0.122 4.122 29 C -0.147 4.147 30 C -0.008 4.008 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.186 0.814 43 H 0.163 0.837 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.756 -16.836 -10.524 19.869 hybrid contribution 0.509 1.094 -0.126 1.214 sum 1.265 -15.742 -10.649 19.048 Atomic orbital electron populations 1.69873 1.04971 1.25513 1.56333 1.24805 0.95684 0.97705 1.02053 0.86197 0.78461 0.83130 0.77919 1.21175 1.21604 1.21056 1.19009 0.90309 0.82106 1.44528 0.90177 1.46013 1.01070 0.99066 1.86242 1.22467 0.84285 0.86956 1.01287 1.24362 0.97813 0.97587 0.80759 0.86926 1.24162 0.96702 0.98893 0.99248 1.23112 0.96556 0.86395 0.90614 0.87607 1.23339 0.79737 0.98942 1.02448 1.49224 1.09685 1.58819 1.15909 1.19807 0.86144 0.77578 0.84510 1.90684 1.15209 1.57385 1.80590 1.21965 0.99801 1.03145 0.94409 1.21502 0.94823 1.01807 0.81299 1.44123 1.49567 1.12416 1.10290 1.21909 1.02246 0.97478 0.85160 1.21656 1.08295 0.94090 0.99482 1.19245 1.03402 0.95680 0.93172 1.20248 0.97697 0.91848 0.99389 1.20602 1.03332 0.98702 0.94302 1.20783 0.98551 0.97370 0.95526 1.20076 1.03412 0.92068 0.99148 1.18295 0.99454 0.87726 0.95370 0.93493 0.93430 0.92064 0.89661 0.91684 0.92689 0.91109 0.88775 0.88405 0.88202 0.88842 0.81438 0.83686 0.86290 0.86281 0.85948 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.67 55.49 0.59 -25.73 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.04 10.38 -15.06 -0.16 -6.19 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.01 3.13 -153.61 -0.48 -14.49 16 10 C 0.17 4.04 4.93 0.20 0.00 4.04 16 11 C 0.10 1.80 5.18 -62.56 -0.32 1.48 16 12 H 0.11 2.03 8.06 -51.93 -0.42 1.62 16 13 C -0.15 -2.45 6.81 -22.28 -0.15 -2.60 16 14 C 0.14 2.54 5.47 -62.55 -0.34 2.20 16 15 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 16 C 0.08 1.31 6.03 -1.68 -0.01 1.30 16 17 N -0.60 -10.47 2.94 -156.80 -0.46 -10.93 16 18 C 0.53 8.87 7.89 -10.99 -0.09 8.78 16 19 O -0.56 -10.84 16.33 5.55 0.09 -10.75 16 20 C -0.15 -1.95 5.31 -27.88 -0.15 -2.10 16 21 C 0.13 1.52 5.29 -4.04 -0.02 1.49 16 22 N -0.48 -5.72 2.78 -114.42 -0.32 -6.04 16 23 C 0.06 0.62 11.27 -16.73 -0.19 0.43 16 24 C -0.21 -2.30 11.08 -37.67 -0.42 -2.71 16 25 C -0.11 -1.34 6.37 -105.14 -0.67 -2.01 16 26 C -0.07 -0.77 10.05 -39.64 -0.40 -1.17 16 27 C -0.15 -1.44 9.97 -39.94 -0.40 -1.84 16 28 C -0.10 -1.02 10.01 -39.54 -0.40 -1.41 16 29 C -0.13 -1.43 10.00 -39.43 -0.39 -1.82 16 30 C 0.10 1.22 6.81 -83.99 -0.57 0.65 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.26 7.82 -51.93 -0.41 0.86 16 33 H 0.06 1.57 7.46 -51.93 -0.39 1.18 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 41 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -31.69 386.08 -11.65 -43.34 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.09 Total: 4.17 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -4.77 Total: -1.74 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.67 Total: -57.19 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.69 -11.65 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032773433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.136 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds