Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21604 * 119.99893 * 359.97438 * 17 16 14 19 19 C 1.47434 * 120.00364 * 180.02562 * 17 16 14 20 20 C 1.38748 * 120.33056 * 359.71529 * 19 17 16 21 21 C 1.38868 * 120.72544 * 179.83162 * 20 19 17 22 22 C 1.36340 * 121.05966 * 0.41114 * 21 20 19 23 23 C 1.40447 * 120.08348 * 359.83139 * 22 21 20 24 24 C 1.40804 * 121.25665 * 179.97438 * 23 22 21 25 25 C 1.36633 * 118.15326 * 180.02562 * 24 23 22 26 26 C 1.39234 * 119.90628 * 0.02562 * 25 24 23 27 27 N 1.31235 * 121.69780 * 0.02562 * 26 25 24 28 28 C 1.33347 * 121.34891 * 359.96270 * 27 26 25 29 29 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 30 30 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 31 31 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 32 32 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 33 33 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 34 34 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 35 35 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 36 36 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 37 37 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 38 38 H 1.08997 * 109.48990 * 155.01938 * 13 12 11 39 39 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 40 40 H 1.08005 * 119.63658 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.47074 * 180.24315 * 21 20 19 42 42 H 1.08005 * 119.96141 * 179.80752 * 22 21 20 43 43 H 1.07998 * 120.92484 * 0.02562 * 24 23 22 44 44 H 1.07995 * 120.04357 * 180.02562 * 25 24 23 45 45 H 1.07998 * 119.15355 * 179.97438 * 26 25 24 46 46 H 1.09007 * 108.94966 * 258.57380 * 29 9 7 47 47 H 1.09000 * 108.94673 * 17.19669 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7710 -6.7368 -0.1940 19 6 2.6715 -7.9465 -0.8022 20 6 4.0564 -8.0285 -0.7840 21 6 4.7114 -9.1020 -1.3732 22 6 4.0148 -10.0978 -1.9912 23 6 2.6118 -10.0517 -2.0372 24 6 1.8678 -11.0663 -2.6693 25 6 0.5059 -10.9575 -2.6771 26 6 -0.1066 -9.8640 -2.0705 27 7 0.5916 -8.9205 -1.4835 28 6 1.9235 -8.9676 -1.4411 29 6 1.7172 -3.6322 -0.0080 30 1 -0.4850 -0.8370 -0.0716 31 1 0.1564 -1.1629 1.7372 32 1 -0.0928 -2.9227 1.8305 33 1 2.4164 -1.5369 2.8962 34 1 0.9884 -1.8612 3.9052 35 1 2.5967 -3.5918 4.1904 36 1 1.1571 -4.2164 3.3746 37 1 3.5115 -3.3254 1.7253 38 1 3.5469 -4.9075 2.5407 39 1 3.6709 -5.8914 0.4519 40 1 4.6312 -7.2505 -0.3036 41 1 5.7901 -9.1474 -1.3436 42 1 4.5425 -10.9229 -2.4464 43 1 2.3600 -11.9072 -3.1351 44 1 -0.0947 -11.7185 -3.1530 45 1 -1.1840 -9.7900 -2.0842 46 1 0.8398 -3.9360 -0.5791 47 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034292872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = 49.092362 kcal Electronic energy + Delta-G solvation = -29245.934949 eV Core-core repulsion = 25394.295982 eV Total energy + Delta-G solvation = -3851.638967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.16624 -39.44927 -37.73902 -37.08796 -34.66421 -33.64916 -33.39812 -31.25296 -30.76042 -30.52794 -29.35707 -25.90456 -24.90219 -24.40520 -23.78427 -23.59410 -22.43067 -20.48141 -19.93567 -19.22084 -18.44934 -17.83004 -17.16440 -17.03548 -16.15246 -15.75957 -15.17336 -14.99620 -14.71228 -14.56588 -14.20034 -14.06706 -13.77135 -13.59809 -13.53686 -13.25267 -13.15483 -12.86584 -12.44852 -12.38387 -12.22147 -12.00094 -11.70747 -11.61532 -11.08995 -10.76428 -10.69190 -10.58434 -10.34938 -10.11358 -9.99276 -9.93362 -9.90221 -9.75893 -9.28341 -9.17433 -9.08406 -8.78134 -8.51687 -8.20097 -6.70768 -5.98331 -3.25637 -0.08715 0.54930 1.53587 2.52961 3.27271 3.33893 3.52203 3.55573 3.73657 4.00249 4.06361 4.27566 4.43437 4.52427 4.60876 4.64585 4.73563 4.82709 4.99530 5.13466 5.21981 5.34578 5.37775 5.42799 5.58983 5.59542 5.60312 5.67085 5.74698 5.87954 5.91022 5.95722 6.02403 6.12837 6.18942 6.36321 6.44258 6.50584 6.52985 6.64072 6.76163 6.77132 6.85680 6.92723 7.02539 7.22773 7.45574 7.75355 7.87713 8.15582 8.54453 8.66441 9.25140 9.92350 10.33282 11.20344 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002670 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.404643 B =10483.919997 C =10663.591097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.019 4.019 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.357 4.357 8 H 0.049 0.951 9 N -0.586 5.586 10 C 0.142 3.858 11 C -0.142 4.142 12 C -0.098 4.098 13 C -0.113 4.113 14 C 0.134 3.866 15 H 0.080 0.920 16 N -0.722 5.722 17 C 0.547 3.453 18 O -0.495 6.495 19 C -0.100 4.100 20 C -0.066 4.066 21 C -0.124 4.124 22 C -0.076 4.076 23 C -0.111 4.111 24 C -0.061 4.061 25 C -0.175 4.175 26 C 0.131 3.869 27 N -0.434 5.434 28 C 0.161 3.839 29 C 0.143 3.857 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.392 0.608 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.160 0.840 46 H 0.019 0.981 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -23.633 -1.680 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.223 4.223 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.486 4.486 8 H 0.067 0.933 9 N -0.309 5.309 10 C 0.015 3.985 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.151 4.151 14 C 0.029 3.971 15 H 0.098 0.902 16 N -0.375 5.375 17 C 0.333 3.667 18 O -0.368 6.368 19 C -0.104 4.104 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.095 4.095 23 C -0.114 4.114 24 C -0.087 4.087 25 C -0.195 4.195 26 C -0.042 4.042 27 N -0.141 5.141 28 C 0.037 3.963 29 C 0.016 3.984 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.227 0.773 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.037 0.963 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.737 -21.146 -1.208 22.549 hybrid contribution 1.229 -2.554 -0.587 2.894 sum 8.966 -23.699 -1.796 25.402 Atomic orbital electron populations 1.70760 1.06934 1.30295 1.45840 1.25820 0.96241 1.01604 0.98602 0.83614 0.75019 0.76277 0.76198 1.21177 1.22047 1.22010 1.19852 1.00309 0.89930 1.38517 0.93335 1.43567 1.59943 1.01162 1.26228 1.20937 0.91828 1.01205 0.84530 1.21371 1.01549 0.95751 0.99540 1.20262 0.98523 0.98117 0.96736 1.21249 0.98231 1.00043 0.95585 1.21501 0.95869 0.85528 0.94161 0.90218 1.46146 1.09770 1.23416 1.58145 1.17912 0.87467 0.82000 0.79357 1.90870 1.12723 1.76759 1.56463 1.20062 0.93078 0.95863 1.01391 1.21479 0.92953 0.97774 0.96491 1.20835 1.00652 0.94134 0.98611 1.21140 0.92253 0.98678 0.97384 1.18842 0.94853 0.96434 1.01233 1.21445 0.94214 0.97133 0.95910 1.21978 0.95603 1.00227 1.01651 1.23226 1.00967 0.88737 0.91263 1.68364 1.05928 1.25465 1.14314 1.18650 0.89908 0.92427 0.95277 1.21585 0.98507 0.85479 0.92816 0.91909 0.90328 0.95756 0.91781 0.93539 0.93665 0.93366 0.90144 0.92928 0.77348 0.84706 0.84782 0.84917 0.84309 0.84443 0.82243 0.96314 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 12.18 55.49 0.68 -26.54 16 2 C -0.02 -0.54 4.68 -17.43 -0.08 -0.62 16 3 Si 1.06 25.33 30.01 -169.99 -5.10 20.23 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.36 -9.96 9.17 -15.06 -0.14 -10.10 16 8 H 0.05 1.37 7.97 -52.49 -0.42 0.95 16 9 N -0.59 -14.83 2.01 -171.87 -0.35 -15.17 16 10 C 0.14 3.40 4.89 -4.08 -0.02 3.38 16 11 C -0.14 -2.85 5.74 -28.58 -0.16 -3.02 16 12 C -0.10 -1.69 5.16 -29.79 -0.15 -1.84 16 13 C -0.11 -1.88 5.07 -28.02 -0.14 -2.02 16 14 C 0.13 2.48 2.27 -68.32 -0.15 2.33 16 15 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 16 N -0.72 -11.18 4.93 -55.26 -0.27 -11.45 16 17 C 0.55 9.51 7.72 -12.52 -0.10 9.41 16 18 O -0.49 -10.70 14.85 5.27 0.08 -10.62 16 19 C -0.10 -1.42 5.91 -104.61 -0.62 -2.04 16 20 C -0.07 -0.67 9.52 -39.16 -0.37 -1.04 16 21 C -0.12 -0.98 9.93 -40.03 -0.40 -1.38 16 22 C -0.08 -0.61 9.75 -39.43 -0.38 -0.99 16 23 C -0.11 -1.20 5.74 -106.82 -0.61 -1.81 16 24 C -0.06 -0.50 9.90 -39.19 -0.39 -0.89 16 25 C -0.17 -1.46 10.03 -39.79 -0.40 -1.86 16 26 C 0.13 1.50 11.15 -17.44 -0.19 1.31 16 27 N -0.43 -6.88 8.44 -10.76 -0.09 -6.97 16 28 C 0.16 2.32 6.61 -84.58 -0.56 1.76 16 29 C 0.14 3.24 5.86 -2.76 -0.02 3.23 16 30 H 0.27 8.37 7.39 -40.82 -0.30 8.07 16 31 H 0.08 2.13 5.28 -51.93 -0.27 1.86 16 32 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.83 7.35 -51.93 -0.38 0.44 16 37 H 0.08 1.50 7.49 -51.93 -0.39 1.11 16 38 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 39 H 0.39 4.69 6.57 -40.82 -0.27 4.42 16 40 H 0.14 1.02 6.37 -52.48 -0.33 0.69 16 41 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 47 H 0.05 1.12 7.86 -51.93 -0.41 0.71 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -35.80 374.69 -10.86 -46.66 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.56 Total: 4.41 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.89 Total: -6.19 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.03 Total: -60.13 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.10 Total: 20.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.80 -10.86 -46.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034292872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.753 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds