Wall clock time and date at job start Tue Mar 31 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48507 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99918 * 3 2 1 6 6 H 1.48501 * 109.47451 * 59.99736 * 3 2 1 7 7 C 1.38819 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00400 * 160.41877 * 7 2 1 9 9 N 1.36944 * 119.99644 * 340.41634 * 7 2 1 10 10 C 1.50171 * 120.53816 * 336.71444 * 9 7 2 11 11 C 1.46235 * 107.53404 * 109.60637 * 10 9 7 12 12 C 1.52535 * 114.27504 * 58.40899 * 11 10 9 13 13 C 1.50127 * 105.41397 * 270.58878 * 12 11 10 14 14 C 1.54840 * 110.81312 * 97.68226 * 13 12 11 15 15 H 1.09002 * 109.35712 * 81.20200 * 14 13 12 16 16 N 1.46502 * 109.36171 * 200.92822 * 14 13 12 17 17 C 1.34771 * 120.00225 * 205.28184 * 16 14 13 18 18 O 1.21606 * 119.99955 * 359.97438 * 17 16 14 19 19 C 1.47438 * 120.00133 * 180.02562 * 17 16 14 20 20 C 1.38742 * 120.33027 * 359.97438 * 19 17 16 21 21 C 1.38867 * 120.72503 * 180.23635 * 20 19 17 22 22 C 1.36346 * 121.05651 * 359.47535 * 21 20 19 23 23 C 1.40433 * 120.08616 * 0.51724 * 22 21 20 24 24 C 1.40810 * 121.26505 * 179.72217 * 23 22 21 25 25 C 1.36635 * 118.15210 * 180.02562 * 24 23 22 26 26 C 1.39230 * 119.91324 * 0.02562 * 25 24 23 27 27 N 1.31229 * 121.69348 * 359.97438 * 26 25 24 28 28 C 1.33353 * 121.35579 * 0.02562 * 27 26 25 29 29 C 1.43127 * 120.55985 * 156.65786 * 9 7 2 30 30 H 0.96996 * 120.00285 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.84328 * 350.10252 * 10 9 7 32 32 H 1.09000 * 109.84208 * 229.11619 * 10 9 7 33 33 H 1.08999 * 108.52732 * 297.16881 * 11 10 9 34 34 H 1.09002 * 108.40202 * 179.55802 * 11 10 9 35 35 H 1.08998 * 110.24873 * 151.61902 * 12 11 10 36 36 H 1.08996 * 110.25053 * 29.56166 * 12 11 10 37 37 H 1.09004 * 109.20703 * 337.34383 * 13 12 11 38 38 H 1.09000 * 109.17394 * 218.00330 * 13 12 11 39 39 H 0.97002 * 119.99845 * 25.27249 * 16 14 13 40 40 H 1.08001 * 119.63835 * 359.95508 * 20 19 17 41 41 H 1.08004 * 119.46821 * 179.72124 * 21 20 19 42 42 H 1.08007 * 119.95924 * 180.29118 * 22 21 20 43 43 H 1.07994 * 120.92111 * 0.05366 * 24 23 22 44 44 H 1.08002 * 120.04355 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.15452 * 180.02562 * 26 25 24 46 46 H 1.09001 * 108.12953 * 149.80279 * 29 9 7 47 47 H 1.09004 * 107.99706 * 33.34101 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0433 -1.2294 -0.3129 9 7 1.3849 -2.3537 0.3986 10 6 0.1858 -2.2980 1.3009 11 6 -0.9806 -2.6842 0.5079 12 6 -0.8822 -4.0721 -0.1173 13 6 -0.2315 -3.8624 -1.4539 14 6 1.2872 -4.1545 -1.3784 15 1 1.4521 -5.2299 -1.4458 16 7 1.9659 -3.4883 -2.4927 17 6 3.1394 -3.9675 -2.9505 18 8 3.6351 -4.9528 -2.4382 19 6 3.8228 -3.2967 -4.0716 20 6 3.2636 -2.1719 -4.6607 21 6 3.8978 -1.5365 -5.7202 22 6 5.0887 -1.9923 -6.2027 23 6 5.6898 -3.1278 -5.6356 24 6 6.9164 -3.6233 -6.1181 25 6 7.4438 -4.7326 -5.5195 26 6 6.7685 -5.3392 -4.4639 27 7 5.6256 -4.8734 -4.0180 28 6 5.0577 -3.7946 -4.5584 29 6 1.8625 -3.6299 -0.0393 30 1 -0.4850 0.8400 -0.0004 31 1 0.0556 -1.2848 1.6812 32 1 0.3151 -2.9921 2.1313 33 1 -1.1142 -1.9538 -0.2900 34 1 -1.8593 -2.6562 1.1522 35 1 -1.8766 -4.4998 -0.2448 36 1 -0.2669 -4.7229 0.5038 37 1 -0.3829 -2.8298 -1.7684 38 1 -0.6893 -4.5303 -2.1836 39 1 1.5706 -2.7022 -2.9012 40 1 2.3227 -1.7889 -4.2942 41 1 3.4421 -0.6650 -6.1667 42 1 5.5688 -1.4817 -7.0245 43 1 7.4263 -3.1397 -6.9381 44 1 8.3828 -5.1388 -5.8654 45 1 7.1967 -6.2152 -3.9994 46 1 1.6370 -4.3610 0.7370 47 1 2.9465 -3.5687 -0.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034292873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:35 Heat of formation + Delta-G solvation = 57.600544 kcal Electronic energy + Delta-G solvation = -30029.648758 eV Core-core repulsion = 26178.378733 eV Total energy + Delta-G solvation = -3851.270024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.91897 -39.11219 -37.58700 -36.83824 -34.10070 -33.41069 -33.06019 -31.10074 -30.64618 -30.44686 -29.24808 -26.10152 -24.76865 -24.13671 -23.46933 -23.19604 -22.49641 -20.25771 -19.51857 -19.12980 -18.20495 -17.54480 -16.81885 -16.60421 -15.89725 -15.37983 -15.03238 -14.72429 -14.66477 -14.43245 -14.06249 -13.95047 -13.74636 -13.54771 -13.10370 -13.06007 -12.95014 -12.32855 -12.17957 -12.06781 -11.76794 -11.72478 -11.50428 -11.36876 -11.26838 -10.78389 -10.70780 -10.51387 -10.43344 -10.04989 -9.91766 -9.69136 -9.61460 -9.39527 -9.21637 -8.90040 -8.84902 -8.55929 -8.34539 -8.14960 -6.65981 -5.79295 -3.16658 0.16169 0.78016 1.76408 2.78627 3.34376 3.44322 3.47853 3.58398 3.74553 4.25842 4.29723 4.50390 4.53000 4.66375 4.76845 4.81730 5.01552 5.09148 5.23443 5.34236 5.41613 5.43990 5.53765 5.64942 5.71318 5.82568 5.87960 5.95914 6.02135 6.16404 6.20020 6.26065 6.29846 6.33549 6.43018 6.50552 6.58558 6.67203 6.74436 6.91544 6.97999 7.02301 7.09656 7.30238 7.34145 7.63811 7.76889 8.00996 8.02531 8.23083 8.44314 8.91385 9.20768 9.88584 10.41771 11.27369 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.003911 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.660822 B = 7156.717164 C = 8371.664451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.235 4.235 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.163 3.837 11 C -0.129 4.129 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.120 3.880 15 H 0.072 0.928 16 N -0.700 5.700 17 C 0.548 3.452 18 O -0.515 6.515 19 C -0.098 4.098 20 C -0.063 4.063 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.111 4.111 24 C -0.062 4.062 25 C -0.178 4.178 26 C 0.125 3.875 27 N -0.431 5.431 28 C 0.161 3.839 29 C 0.151 3.849 30 H 0.251 0.749 31 H 0.089 0.911 32 H 0.005 0.995 33 H 0.100 0.900 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.397 0.603 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.158 0.842 46 H 0.036 0.964 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -5.703 -12.909 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.365 4.365 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.040 3.960 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.012 3.988 15 H 0.090 0.910 16 N -0.351 5.351 17 C 0.334 3.666 18 O -0.391 6.391 19 C -0.102 4.102 20 C -0.083 4.083 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.198 4.198 26 C -0.048 4.048 27 N -0.138 5.138 28 C 0.037 3.963 29 C 0.021 3.979 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.023 0.977 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.232 0.768 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.175 0.825 46 H 0.054 0.946 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.707 -6.617 -11.762 15.070 hybrid contribution 0.676 1.874 -1.074 2.263 sum 7.382 -4.743 -12.836 15.549 Atomic orbital electron populations 1.69970 1.04922 1.24918 1.54764 1.24830 0.95161 0.97862 1.01739 0.86369 0.79565 0.84553 0.77198 1.20548 1.21989 1.21736 1.19206 0.93426 0.85243 1.38643 0.91835 1.44182 1.33489 1.00859 1.51787 1.20187 0.85420 1.00412 0.89980 1.21000 0.98034 0.95554 1.02211 1.20975 0.98549 0.98879 0.96614 1.21668 0.93559 1.02213 0.97345 1.22767 0.91668 0.95838 0.88495 0.90983 1.45943 1.22025 1.31718 1.35428 1.17804 0.81391 0.84488 0.82953 1.90799 1.64417 1.25510 1.58377 1.20109 0.94754 0.97030 0.98265 1.21575 0.99657 0.92991 0.94109 1.20871 0.95658 1.00404 0.96834 1.21097 0.95330 0.94626 0.99033 1.18829 0.96639 0.97780 0.98093 1.21419 0.93586 0.95347 0.98428 1.21926 1.01792 0.97547 0.98534 1.23159 0.90578 0.98370 0.92673 1.68342 1.09360 1.09941 1.26144 1.18646 0.93699 0.91840 0.92069 1.20740 0.97012 0.88332 0.91836 0.93917 0.89293 0.97697 0.88160 0.95751 0.93307 0.92405 0.90267 0.94326 0.76832 0.84352 0.84842 0.85100 0.84505 0.84704 0.82504 0.94615 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.56 9.43 55.49 0.52 -23.03 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.89 21.01 29.60 -169.99 -5.03 15.98 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.11 9.62 -15.05 -0.14 -6.26 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.58 -13.88 2.60 -175.31 -0.46 -14.34 16 10 C 0.16 3.73 5.24 -5.20 -0.03 3.70 16 11 C -0.13 -2.67 5.02 -30.18 -0.15 -2.82 16 12 C -0.11 -2.01 5.76 -28.40 -0.16 -2.17 16 13 C -0.11 -1.99 5.23 -27.19 -0.14 -2.13 16 14 C 0.12 2.32 2.92 -65.96 -0.19 2.13 16 15 H 0.07 1.42 7.57 -51.93 -0.39 1.02 16 16 N -0.70 -13.14 5.03 -52.97 -0.27 -13.41 16 17 C 0.55 10.83 7.61 -12.52 -0.10 10.74 16 18 O -0.51 -11.68 14.85 5.27 0.08 -11.60 16 19 C -0.10 -1.68 5.90 -104.61 -0.62 -2.30 16 20 C -0.06 -0.88 9.52 -39.16 -0.37 -1.25 16 21 C -0.12 -1.36 9.93 -40.03 -0.40 -1.76 16 22 C -0.08 -0.88 9.75 -39.44 -0.38 -1.27 16 23 C -0.11 -1.45 5.74 -106.82 -0.61 -2.06 16 24 C -0.06 -0.62 9.90 -39.19 -0.39 -1.01 16 25 C -0.18 -1.75 10.03 -39.79 -0.40 -2.15 16 26 C 0.13 1.60 11.15 -17.44 -0.19 1.40 16 27 N -0.43 -7.48 8.44 -10.76 -0.09 -7.57 16 28 C 0.16 2.67 6.61 -84.58 -0.56 2.11 16 29 C 0.15 3.30 4.76 -4.82 -0.02 3.28 16 30 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.09 2.27 6.05 -51.93 -0.31 1.95 16 32 H 0.00 0.11 8.12 -51.93 -0.42 -0.32 16 33 H 0.10 2.35 5.29 -51.93 -0.27 2.07 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.03 6.28 -51.93 -0.33 0.71 16 37 H 0.08 1.61 6.59 -51.93 -0.34 1.27 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 7.02 6.47 -40.82 -0.26 6.76 16 40 H 0.14 1.80 6.37 -52.49 -0.33 1.47 16 41 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.04 0.75 6.88 -51.93 -0.36 0.39 16 47 H 0.04 0.91 7.83 -51.93 -0.41 0.50 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.42 369.23 -11.00 -42.42 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.37 Total: 7.85 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -4.95 Total: -1.86 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.29 Total: -58.35 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.42 -11.00 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034292873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.017 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds