Wall clock time and date at job start Tue Mar 31 2020 23:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00071 * 2 1 4 4 H 1.48508 * 109.47070 * 90.00399 * 3 2 1 5 5 H 1.48498 * 109.47551 * 330.00298 * 3 2 1 6 6 H 1.48503 * 109.47046 * 209.99959 * 3 2 1 7 7 C 1.38809 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 139.71479 * 7 2 1 9 9 N 1.36936 * 120.00323 * 319.71194 * 7 2 1 10 10 C 1.50169 * 120.53670 * 353.35809 * 9 7 2 11 11 C 1.46232 * 107.53370 * 109.56451 * 10 9 7 12 12 C 1.52529 * 114.27677 * 58.40873 * 11 10 9 13 13 C 1.50127 * 105.41486 * 270.59108 * 12 11 10 14 14 C 1.54841 * 110.81334 * 97.68541 * 13 12 11 15 15 H 1.08993 * 109.35976 * 81.33660 * 14 13 12 16 16 N 1.46497 * 109.35842 * 200.92926 * 14 13 12 17 17 C 1.34778 * 120.00093 * 205.00323 * 16 14 13 18 18 O 1.21543 * 119.99997 * 359.97438 * 17 16 14 19 19 C 1.47900 * 120.00242 * 179.97438 * 17 16 14 20 20 C 1.38893 * 121.11120 * 355.09738 * 19 17 16 21 21 C 1.39276 * 119.58033 * 179.68373 * 20 19 17 22 22 N 1.30992 * 121.88287 * 0.66237 * 21 20 19 23 23 C 1.33533 * 121.82489 * 359.63635 * 22 21 20 24 24 C 1.40718 * 120.96868 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.74509 * 179.97438 * 24 23 22 26 26 C 1.39358 * 121.04849 * 0.04006 * 25 24 23 27 27 C 1.36244 * 120.84452 * 359.97438 * 26 25 24 28 28 C 1.40107 * 119.63994 * 0.02562 * 27 26 25 29 29 C 1.43432 * 120.53864 * 173.07867 * 9 7 2 30 30 H 0.96998 * 120.00201 * 173.76982 * 1 2 3 31 31 H 1.08999 * 109.84463 * 229.07583 * 10 9 7 32 32 H 1.09006 * 109.84324 * 349.99053 * 10 9 7 33 33 H 1.08999 * 108.52457 * 179.65085 * 11 10 9 34 34 H 1.09001 * 108.52686 * 297.32256 * 11 10 9 35 35 H 1.09000 * 110.24621 * 29.56706 * 12 11 10 36 36 H 1.09002 * 110.24756 * 151.47335 * 12 11 10 37 37 H 1.08997 * 109.20511 * 218.02872 * 13 12 11 38 38 H 1.08995 * 109.20689 * 337.33839 * 13 12 11 39 39 H 0.97002 * 120.00160 * 24.99143 * 16 14 13 40 40 H 1.08001 * 120.21387 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.05967 * 180.32088 * 21 20 19 42 42 H 1.07997 * 120.12878 * 359.97438 * 24 23 22 43 43 H 1.07995 * 119.47872 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.57443 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.17696 * 179.97438 * 27 26 25 46 46 H 1.09000 * 108.16197 * 33.30182 * 29 9 7 47 47 H 1.09001 * 108.16314 * 149.87136 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4002 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4401 -0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 2.8980 -1.3128 -0.6054 9 7 1.5690 -2.2478 0.7658 10 6 0.4264 -2.0637 1.7227 11 6 -0.7207 -2.7939 1.1848 12 6 -0.4727 -4.2841 0.9740 13 6 0.0671 -4.4053 -0.4215 14 6 1.6131 -4.4907 -0.4080 15 1 1.9165 -5.5133 -0.1841 16 7 2.1320 -4.1101 -1.7240 17 6 3.3339 -4.5640 -2.1315 18 8 3.9873 -5.2888 -1.4070 19 6 3.8576 -4.1802 -3.4604 20 6 3.0892 -3.4372 -4.3473 21 6 3.6167 -3.0877 -5.5881 22 7 4.8205 -3.4507 -5.9552 23 6 5.6130 -4.1707 -5.1573 24 6 6.9036 -4.5504 -5.5699 25 6 7.6903 -5.2837 -4.7364 26 6 7.2389 -5.6683 -3.4753 27 6 5.9952 -5.3192 -3.0421 28 6 5.1582 -4.5643 -3.8743 29 6 2.1870 -3.5381 0.6633 30 1 -0.4850 -0.8350 -0.0912 31 1 0.6945 -2.4639 2.7005 32 1 0.1842 -1.0045 1.8103 33 1 -1.5591 -2.6760 1.8713 34 1 -0.9944 -2.3518 0.2268 35 1 0.2585 -4.6504 1.6946 36 1 -1.4061 -4.8389 1.0694 37 1 -0.3377 -5.3046 -0.8857 38 1 -0.2390 -3.5346 -1.0013 39 1 1.6106 -3.5315 -2.3022 40 1 2.0912 -3.1276 -4.0745 41 1 3.0138 -2.5053 -6.2691 42 1 7.2683 -4.2610 -6.5443 43 1 8.6802 -5.5724 -5.0573 44 1 7.8835 -6.2498 -2.8329 45 1 5.6562 -5.6235 -2.0629 46 1 3.2456 -3.3917 0.4485 47 1 2.1075 -4.0309 1.6323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034296089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:17 Heat of formation + Delta-G solvation = 59.721284 kcal Electronic energy + Delta-G solvation = -30004.731363 eV Core-core repulsion = 26153.553301 eV Total energy + Delta-G solvation = -3851.178062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.07932 -39.44181 -38.00449 -37.12171 -34.66350 -33.55242 -33.30493 -31.30322 -30.61007 -30.42074 -29.54081 -26.28849 -25.17288 -24.13853 -23.59446 -23.10144 -22.34564 -20.82029 -20.11435 -19.40350 -18.17033 -17.52877 -17.32972 -17.13377 -15.80280 -15.56628 -15.28778 -14.94331 -14.73722 -14.61324 -14.41590 -14.07737 -13.91403 -13.68782 -13.51493 -13.19603 -13.15500 -12.77229 -12.45125 -12.23599 -11.92038 -11.83310 -11.68198 -11.39866 -11.13779 -10.93022 -10.62153 -10.53909 -10.41308 -10.25820 -10.17028 -10.08903 -9.87906 -9.80487 -9.52687 -9.16495 -8.88944 -8.84897 -8.30669 -8.20106 -7.03489 -6.23268 -3.08968 0.08938 0.75084 1.72329 2.78782 3.20848 3.36409 3.49639 3.53762 3.68716 4.11940 4.19385 4.55110 4.57919 4.65181 4.70181 4.80470 5.04026 5.08346 5.11230 5.16761 5.23625 5.28310 5.32754 5.49517 5.55612 5.64022 5.75400 5.85353 5.89324 5.92482 5.98336 6.04396 6.17388 6.25391 6.26720 6.29171 6.45972 6.49837 6.53598 6.60484 6.62520 6.78079 6.81211 6.82727 6.96925 7.17222 7.19617 7.74535 7.79634 7.94213 8.40601 8.46639 9.00726 9.78424 10.22634 11.06981 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.003795 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.753233 B = 7375.840111 C = 8434.414295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.014 4.014 3 Si 1.037 2.963 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.352 4.352 8 H 0.064 0.936 9 N -0.586 5.586 10 C 0.127 3.873 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.078 0.922 16 N -0.689 5.689 17 C 0.556 3.444 18 O -0.540 6.540 19 C -0.062 4.062 20 C -0.138 4.138 21 C 0.129 3.871 22 N -0.464 5.464 23 C 0.123 3.877 24 C -0.102 4.102 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.096 4.096 28 C -0.067 4.067 29 C 0.153 3.847 30 H 0.274 0.726 31 H 0.024 0.976 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.400 0.600 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.170 0.830 46 H 0.042 0.958 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -10.729 -7.277 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.216 4.216 3 Si 0.868 3.132 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.480 4.480 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.003 3.997 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.005 3.995 15 H 0.096 0.904 16 N -0.337 5.337 17 C 0.343 3.657 18 O -0.420 6.420 19 C -0.074 4.074 20 C -0.159 4.159 21 C -0.043 4.043 22 N -0.173 5.173 23 C 0.001 3.999 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.143 4.143 27 C -0.114 4.114 28 C -0.069 4.069 29 C 0.022 3.978 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.187 0.813 46 H 0.060 0.940 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.835 -9.350 -7.465 13.311 hybrid contribution -0.457 -1.449 0.212 1.534 sum 5.378 -10.799 -7.254 14.076 Atomic orbital electron populations 1.70845 1.07161 1.30660 1.45699 1.25378 0.95785 1.00548 0.99917 0.83932 0.75364 0.77239 0.76704 1.22146 1.21958 1.22032 1.19919 1.08951 0.92252 1.26891 0.91854 1.44386 1.37716 1.05076 1.43542 1.20640 0.86715 1.01728 0.90590 1.21092 0.99419 0.94514 1.02416 1.20941 0.99837 0.97502 0.96528 1.21673 0.93939 1.01236 0.98142 1.22905 0.93599 0.99590 0.83405 0.90355 1.45946 1.18734 1.49576 1.19449 1.17936 0.81809 0.80639 0.85337 1.90536 1.57110 1.38334 1.56025 1.20470 0.94212 0.97859 0.94817 1.22484 1.01261 0.97274 0.94869 1.22899 0.91552 0.95699 0.94172 1.67794 1.05001 1.10135 1.34358 1.18888 0.94860 0.96131 0.90022 1.20742 0.91833 0.98948 1.00514 1.20960 0.99729 0.97150 0.94074 1.21079 0.96474 1.00544 0.96200 1.22127 0.92976 0.94623 1.01641 1.18690 0.93792 0.99280 0.95162 1.20625 0.96290 0.86269 0.94573 0.91314 0.95753 0.88577 0.94107 0.91072 0.91692 0.92530 0.93521 0.90954 0.76409 0.83880 0.81734 0.84795 0.85452 0.85525 0.81272 0.93994 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 11.97 55.49 0.66 -23.75 16 2 C -0.01 -0.36 4.56 -17.43 -0.08 -0.44 16 3 Si 1.04 24.34 30.05 -169.99 -5.11 19.23 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.35 -9.01 9.47 -15.06 -0.14 -9.15 16 8 H 0.06 1.71 8.05 -52.48 -0.42 1.29 16 9 N -0.59 -13.26 2.62 -175.40 -0.46 -13.72 16 10 C 0.13 2.72 5.22 -5.21 -0.03 2.69 16 11 C -0.14 -2.49 4.94 -30.19 -0.15 -2.64 16 12 C -0.11 -1.71 5.76 -28.40 -0.16 -1.88 16 13 C -0.11 -1.76 5.23 -27.19 -0.14 -1.90 16 14 C 0.11 1.92 2.91 -66.22 -0.19 1.73 16 15 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 16 N -0.69 -11.41 5.04 -53.08 -0.27 -11.68 16 17 C 0.56 9.59 7.57 -12.30 -0.09 9.49 16 18 O -0.54 -10.27 13.18 5.33 0.07 -10.20 16 19 C -0.06 -0.98 5.94 -104.34 -0.62 -1.60 16 20 C -0.14 -1.84 9.60 -38.95 -0.37 -2.22 16 21 C 0.13 1.62 11.14 -17.52 -0.20 1.43 16 22 N -0.46 -6.71 10.30 -11.00 -0.11 -6.83 16 23 C 0.12 1.82 6.61 -84.87 -0.56 1.26 16 24 C -0.10 -1.25 9.98 -39.43 -0.39 -1.65 16 25 C -0.10 -1.07 9.94 -39.95 -0.40 -1.47 16 26 C -0.12 -1.50 9.96 -39.88 -0.40 -1.89 16 27 C -0.10 -1.42 9.25 -39.60 -0.37 -1.79 16 28 C -0.07 -1.05 5.76 -106.52 -0.61 -1.66 16 29 C 0.15 3.07 4.75 -4.92 -0.02 3.05 16 30 H 0.27 7.14 4.90 -40.82 -0.20 6.94 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 2.36 5.55 -51.93 -0.29 2.07 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.47 4.69 -51.93 -0.24 1.23 16 35 H 0.06 1.01 6.28 -51.93 -0.33 0.69 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.28 6.58 -51.93 -0.34 0.94 16 39 H 0.40 6.27 6.60 -40.82 -0.27 6.00 16 40 H 0.14 1.63 6.54 -52.49 -0.34 1.28 16 41 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.17 2.75 4.97 -52.48 -0.26 2.49 16 46 H 0.04 0.94 7.81 -51.93 -0.41 0.53 16 47 H 0.04 0.75 6.89 -51.93 -0.36 0.40 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -29.79 364.29 -10.69 -40.48 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.03 Total: 9.62 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.93 Total: -8.64 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.18 Total: -55.98 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.11 Total: 19.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.79 -10.69 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034296089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.202 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds