Wall clock time and date at job start Tue Mar 31 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48507 * 109.47067 * 239.99995 * 3 2 1 5 5 H 1.48498 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47076 * 120.00377 * 3 2 1 7 7 C 1.38813 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 158.61202 * 7 2 1 9 9 N 1.36940 * 120.00028 * 338.61549 * 7 2 1 10 10 C 1.43431 * 120.53729 * 156.25425 * 9 7 2 11 11 C 1.54898 * 116.07815 * 271.58284 * 10 9 7 12 12 C 1.54837 * 110.14651 * 318.64674 * 11 10 9 13 13 C 1.50310 * 110.68838 * 321.12857 * 12 11 10 14 14 C 1.52523 * 105.33267 * 97.84012 * 13 12 11 15 15 H 1.09004 * 108.51811 * 31.56883 * 14 13 12 16 16 N 1.46497 * 108.52661 * 149.24028 * 14 13 12 17 17 C 1.34776 * 120.00286 * 207.28880 * 16 14 13 18 18 O 1.21565 * 119.99731 * 0.02562 * 17 16 14 19 19 C 1.47756 * 119.99871 * 179.72247 * 17 16 14 20 20 C 1.40594 * 120.27367 * 0.27879 * 19 17 16 21 21 N 1.30799 * 121.54677 * 179.97438 * 20 19 17 22 22 C 1.33826 * 121.71556 * 359.97438 * 21 20 19 23 23 C 1.40516 * 120.82267 * 180.02562 * 22 21 20 24 24 C 1.36139 * 119.81623 * 179.97438 * 23 22 21 25 25 C 1.39336 * 121.08633 * 0.02562 * 24 23 22 26 26 C 1.36144 * 120.83339 * 359.97438 * 25 24 23 27 27 C 1.40531 * 119.61844 * 359.97438 * 26 25 24 28 28 C 1.39011 * 120.26585 * 179.97438 * 19 17 16 29 29 C 1.46239 * 114.16196 * 270.40741 * 14 13 12 30 30 H 0.97000 * 120.00113 * 0.02562 * 1 2 3 31 31 H 1.08995 * 108.15904 * 33.30712 * 10 9 7 32 32 H 1.09004 * 108.15538 * 149.87081 * 10 9 7 33 33 H 1.09010 * 109.35485 * 78.85052 * 11 10 9 34 34 H 1.08994 * 109.35986 * 198.57033 * 11 10 9 35 35 H 1.09001 * 109.21174 * 81.46757 * 12 11 10 36 36 H 1.08993 * 109.21002 * 200.83486 * 12 11 10 37 37 H 1.09003 * 110.38848 * 338.84156 * 13 12 11 38 38 H 1.08997 * 110.19717 * 216.73661 * 13 12 11 39 39 H 0.97002 * 119.99868 * 27.28529 * 16 14 13 40 40 H 1.08005 * 119.22885 * 0.02562 * 20 19 17 41 41 H 1.08002 * 120.09399 * 0.02562 * 23 22 21 42 42 H 1.07999 * 119.45356 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.58315 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.18567 * 180.02562 * 26 25 24 45 45 H 1.07995 * 121.02133 * 0.02562 * 28 19 17 46 46 H 1.08990 * 109.84625 * 177.98455 * 29 14 13 47 47 H 1.09000 * 109.84745 * 298.97626 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0345 -1.2343 -0.3416 9 7 1.3962 -2.3475 0.4314 10 6 1.8579 -3.6322 -0.0084 11 6 1.2341 -4.1671 -1.3215 12 6 -0.2854 -3.8713 -1.3492 13 6 -0.8892 -4.0657 0.0135 14 6 -0.9651 -2.6700 0.6239 15 1 -1.1220 -1.9492 -0.1787 16 7 -2.1184 -2.6184 1.5258 17 6 -2.7397 -1.4453 1.7589 18 8 -2.3433 -0.4301 1.2203 19 6 -3.9066 -1.3944 2.6637 20 6 -4.3701 -2.5652 3.2892 21 7 -5.4003 -2.5487 4.0950 22 6 -6.0642 -1.4185 4.3651 23 6 -7.1683 -1.4223 5.2342 24 6 -7.8284 -0.2605 5.4950 25 6 -7.4285 0.9405 4.9128 26 6 -6.3637 0.9848 4.0656 27 6 -5.6582 -0.1953 3.7745 28 6 -4.5513 -0.1874 2.9085 29 6 0.2283 -2.2785 1.3729 30 1 -0.4850 0.8400 -0.0004 31 1 2.9381 -3.5772 -0.1432 32 1 1.6561 -4.3547 0.7825 33 1 1.7123 -3.6818 -2.1725 34 1 1.3919 -5.2437 -1.3841 35 1 -0.4446 -2.8416 -1.6696 36 1 -0.7692 -4.5456 -2.0558 37 1 -0.2540 -4.7095 0.6219 38 1 -1.8878 -4.4935 -0.0749 39 1 -2.4349 -3.4286 1.9551 40 1 -3.8632 -3.5000 3.1005 41 1 -7.4919 -2.3440 5.6947 42 1 -8.6765 -0.2702 6.1636 43 1 -7.9700 1.8479 5.1364 44 1 -6.0624 1.9216 3.6204 45 1 -4.2138 0.7278 2.4451 46 1 0.1137 -1.2611 1.7464 47 1 0.3838 -2.9641 2.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034420610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:27 Heat of formation + Delta-G solvation = 58.244011 kcal Electronic energy + Delta-G solvation = -29541.209984 eV Core-core repulsion = 25689.967863 eV Total energy + Delta-G solvation = -3851.242122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.96451 -39.31735 -37.64484 -36.79078 -34.13086 -33.44386 -33.12197 -31.22311 -30.62884 -30.17963 -29.34290 -26.11293 -24.77302 -24.18486 -24.07060 -22.69309 -22.19602 -20.67554 -19.91159 -18.88246 -18.13698 -17.68760 -17.13482 -16.55761 -15.78045 -15.27788 -14.92316 -14.71910 -14.65298 -14.28442 -14.21410 -13.86512 -13.76560 -13.50707 -13.47599 -13.06641 -13.02190 -12.45030 -12.23013 -11.92757 -11.89339 -11.83093 -11.63917 -11.29285 -11.22815 -10.69478 -10.64527 -10.55977 -10.22783 -10.13081 -9.84501 -9.80177 -9.72332 -9.51065 -9.38721 -9.00431 -8.91017 -8.47213 -8.41172 -8.13061 -6.61061 -5.59491 -3.02855 0.17792 0.53198 1.79414 2.58151 3.47747 3.55438 3.55580 3.62233 3.69884 4.08647 4.14008 4.44277 4.60626 4.63478 4.75346 4.76927 4.95010 4.98055 5.17405 5.28319 5.47215 5.55094 5.58646 5.62966 5.67552 5.75549 5.83998 5.85868 5.93929 6.13208 6.14443 6.20807 6.24855 6.33190 6.36163 6.42449 6.55492 6.61819 6.62928 6.88006 6.96597 7.01785 7.09405 7.20888 7.25795 7.59545 7.66425 7.73712 7.95349 8.26144 8.55831 8.94676 9.32689 9.98217 10.50651 11.45463 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003188 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.999582 B = 8780.636312 C =10292.112039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.012 3.988 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.277 4.277 8 H 0.065 0.935 9 N -0.580 5.580 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.123 4.123 14 C 0.130 3.870 15 H 0.131 0.869 16 N -0.727 5.727 17 C 0.539 3.461 18 O -0.476 6.476 19 C -0.178 4.178 20 C 0.160 3.840 21 N -0.481 5.481 22 C 0.135 3.865 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.125 4.125 26 C -0.085 4.085 27 C -0.110 4.110 28 C 0.003 3.997 29 C 0.158 3.842 30 H 0.262 0.738 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.381 0.619 40 H 0.161 0.839 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.154 0.846 46 H 0.094 0.906 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 -4.626 8.325 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.407 4.407 8 H 0.083 0.917 9 N -0.301 5.301 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.161 4.161 14 C 0.027 3.973 15 H 0.148 0.852 16 N -0.379 5.379 17 C 0.321 3.679 18 O -0.348 6.348 19 C -0.184 4.184 20 C -0.014 4.014 21 N -0.189 5.189 22 C 0.014 3.986 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.143 4.143 26 C -0.104 4.104 27 C -0.112 4.112 28 C -0.024 4.024 29 C 0.033 3.967 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.214 0.786 40 H 0.178 0.822 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.112 0.888 47 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -14.721 -4.417 8.361 17.497 hybrid contribution 0.521 1.149 -0.278 1.292 sum -14.200 -3.268 8.083 16.663 Atomic orbital electron populations 1.69828 1.03920 1.26405 1.49946 1.24978 0.95289 0.97887 1.00858 0.86606 0.79101 0.84607 0.77781 1.21287 1.21866 1.21421 1.18962 0.94407 0.85545 1.41743 0.91736 1.44015 1.35468 1.01037 1.49591 1.20415 0.96357 0.87884 0.92533 1.22909 0.95890 0.98101 1.01670 1.21316 0.95538 1.02106 0.95333 1.21397 0.99447 0.97259 0.98023 1.21249 0.84670 0.96826 0.94582 0.85161 1.46407 1.33498 1.08738 1.49274 1.17943 0.82548 0.85104 0.82282 1.91006 1.63573 1.32587 1.47667 1.21407 0.99848 0.95041 1.02067 1.23089 0.91106 0.97420 0.89776 1.67932 1.07711 1.28050 1.15166 1.18986 0.95324 0.88308 0.95993 1.20802 0.94239 0.99109 0.97549 1.20940 0.99477 0.92284 0.99042 1.20917 0.97411 0.98314 0.97651 1.21105 0.94924 0.97058 0.97272 1.18864 0.97587 0.95027 0.99753 1.22011 0.90413 0.98628 0.91337 1.20416 0.85424 1.01148 0.89732 0.92678 0.95020 0.95617 0.93021 0.93962 0.90639 0.94446 0.91931 0.92792 0.78633 0.82221 0.84710 0.85326 0.85451 0.84908 0.82886 0.88780 0.97745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.97 7.78 55.49 0.43 -23.54 16 2 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 3 Si 0.89 21.99 29.60 -169.99 -5.03 16.95 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.28 -7.50 9.61 -15.06 -0.14 -7.65 16 8 H 0.06 1.76 7.90 -52.49 -0.41 1.34 16 9 N -0.58 -14.04 2.60 -175.08 -0.45 -14.49 16 10 C 0.16 3.24 5.17 -4.66 -0.02 3.21 16 11 C -0.14 -2.66 6.41 -24.76 -0.16 -2.82 16 12 C -0.10 -1.93 5.66 -27.10 -0.15 -2.09 16 13 C -0.12 -2.10 5.24 -28.32 -0.15 -2.25 16 14 C 0.13 2.61 1.82 -71.39 -0.13 2.48 16 15 H 0.13 3.23 4.60 -51.93 -0.24 2.99 16 16 N -0.73 -12.27 4.86 -58.19 -0.28 -12.55 16 17 C 0.54 9.92 7.61 -12.37 -0.09 9.82 16 18 O -0.48 -10.92 13.66 5.31 0.07 -10.84 16 19 C -0.18 -2.70 5.89 -104.83 -0.62 -3.31 16 20 C 0.16 2.11 10.68 -17.10 -0.18 1.92 16 21 N -0.48 -6.62 10.30 -10.67 -0.11 -6.73 16 22 C 0.13 1.78 6.61 -84.79 -0.56 1.22 16 23 C -0.10 -1.03 9.97 -39.48 -0.39 -1.42 16 24 C -0.10 -0.82 9.94 -39.93 -0.40 -1.22 16 25 C -0.12 -1.07 9.96 -39.93 -0.40 -1.47 16 26 C -0.08 -0.87 9.77 -39.47 -0.39 -1.26 16 27 C -0.11 -1.43 5.74 -106.82 -0.61 -2.04 16 28 C 0.00 0.04 9.46 -38.43 -0.36 -0.32 16 29 C 0.16 3.61 4.63 -5.20 -0.02 3.58 16 30 H 0.26 7.51 8.06 -40.82 -0.33 7.19 16 31 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 32 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 33 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.68 6.82 -51.93 -0.35 1.32 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 38 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.38 4.99 6.61 -40.82 -0.27 4.72 16 40 H 0.16 1.65 6.37 -52.48 -0.33 1.32 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 45 H 0.15 2.18 7.70 -52.49 -0.40 1.77 16 46 H 0.09 2.52 5.79 -51.93 -0.30 2.22 16 47 H 0.00 0.10 8.12 -51.93 -0.42 -0.33 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -31.26 366.95 -11.06 -42.31 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.34 Total: 6.74 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.87 Total: -3.38 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.42 Total: -57.32 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.26 -11.06 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034420610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.558 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds