Wall clock time and date at job start Tue Mar 31 2020 23:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48507 * 109.47067 * 239.99995 * 3 2 1 5 5 H 1.48498 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47076 * 120.00377 * 3 2 1 7 7 C 1.38813 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 158.61202 * 7 2 1 9 9 N 1.36940 * 120.00028 * 338.61549 * 7 2 1 10 10 C 1.43431 * 120.53729 * 156.25425 * 9 7 2 11 11 C 1.54898 * 116.07815 * 271.58284 * 10 9 7 12 12 C 1.54837 * 110.14651 * 318.64674 * 11 10 9 13 13 C 1.50310 * 110.68838 * 321.12857 * 12 11 10 14 14 C 1.52523 * 105.33267 * 97.84012 * 13 12 11 15 15 H 1.09004 * 108.51811 * 31.56883 * 14 13 12 16 16 N 1.46497 * 108.52661 * 149.24028 * 14 13 12 17 17 C 1.34776 * 120.00286 * 207.28880 * 16 14 13 18 18 O 1.21565 * 119.99731 * 0.02562 * 17 16 14 19 19 C 1.47756 * 119.99871 * 179.72247 * 17 16 14 20 20 C 1.40594 * 120.27367 * 0.27879 * 19 17 16 21 21 N 1.30799 * 121.54677 * 179.97438 * 20 19 17 22 22 C 1.33826 * 121.71556 * 359.97438 * 21 20 19 23 23 C 1.40516 * 120.82267 * 180.02562 * 22 21 20 24 24 C 1.36139 * 119.81623 * 179.97438 * 23 22 21 25 25 C 1.39336 * 121.08633 * 0.02562 * 24 23 22 26 26 C 1.36144 * 120.83339 * 359.97438 * 25 24 23 27 27 C 1.40531 * 119.61844 * 359.97438 * 26 25 24 28 28 C 1.39011 * 120.26585 * 179.97438 * 19 17 16 29 29 C 1.46239 * 114.16196 * 270.40741 * 14 13 12 30 30 H 0.97000 * 120.00113 * 0.02562 * 1 2 3 31 31 H 1.08995 * 108.15904 * 33.30712 * 10 9 7 32 32 H 1.09004 * 108.15538 * 149.87081 * 10 9 7 33 33 H 1.09010 * 109.35485 * 78.85052 * 11 10 9 34 34 H 1.08994 * 109.35986 * 198.57033 * 11 10 9 35 35 H 1.09001 * 109.21174 * 81.46757 * 12 11 10 36 36 H 1.08993 * 109.21002 * 200.83486 * 12 11 10 37 37 H 1.09003 * 110.38848 * 338.84156 * 13 12 11 38 38 H 1.08997 * 110.19717 * 216.73661 * 13 12 11 39 39 H 0.97002 * 119.99868 * 27.28529 * 16 14 13 40 40 H 1.08005 * 119.22885 * 0.02562 * 20 19 17 41 41 H 1.08002 * 120.09399 * 0.02562 * 23 22 21 42 42 H 1.07999 * 119.45356 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.58315 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.18567 * 180.02562 * 26 25 24 45 45 H 1.07995 * 121.02133 * 0.02562 * 28 19 17 46 46 H 1.08990 * 109.84625 * 177.98455 * 29 14 13 47 47 H 1.09000 * 109.84745 * 298.97626 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0345 -1.2343 -0.3416 9 7 1.3962 -2.3475 0.4314 10 6 1.8579 -3.6322 -0.0084 11 6 1.2341 -4.1671 -1.3215 12 6 -0.2854 -3.8713 -1.3492 13 6 -0.8892 -4.0657 0.0135 14 6 -0.9651 -2.6700 0.6239 15 1 -1.1220 -1.9492 -0.1787 16 7 -2.1184 -2.6184 1.5258 17 6 -2.7397 -1.4453 1.7589 18 8 -2.3433 -0.4301 1.2203 19 6 -3.9066 -1.3944 2.6637 20 6 -4.3701 -2.5652 3.2892 21 7 -5.4003 -2.5487 4.0950 22 6 -6.0642 -1.4185 4.3651 23 6 -7.1683 -1.4223 5.2342 24 6 -7.8284 -0.2605 5.4950 25 6 -7.4285 0.9405 4.9128 26 6 -6.3637 0.9848 4.0656 27 6 -5.6582 -0.1953 3.7745 28 6 -4.5513 -0.1874 2.9085 29 6 0.2283 -2.2785 1.3729 30 1 -0.4850 0.8400 -0.0004 31 1 2.9381 -3.5772 -0.1432 32 1 1.6561 -4.3547 0.7825 33 1 1.7123 -3.6818 -2.1725 34 1 1.3919 -5.2437 -1.3841 35 1 -0.4446 -2.8416 -1.6696 36 1 -0.7692 -4.5456 -2.0558 37 1 -0.2540 -4.7095 0.6219 38 1 -1.8878 -4.4935 -0.0749 39 1 -2.4349 -3.4286 1.9551 40 1 -3.8632 -3.5000 3.1005 41 1 -7.4919 -2.3440 5.6947 42 1 -8.6765 -0.2702 6.1636 43 1 -7.9700 1.8479 5.1364 44 1 -6.0624 1.9216 3.6204 45 1 -4.2138 0.7278 2.4451 46 1 0.1137 -1.2611 1.7464 47 1 0.3838 -2.9641 2.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034420610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:25 Heat of formation + Delta-G solvation = 39.634001 kcal Electronic energy + Delta-G solvation = -29542.016975 eV Core-core repulsion = 25689.967863 eV Total energy + Delta-G solvation = -3852.049112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96424 -40.74633 -39.10121 -37.81960 -35.78206 -34.84731 -34.43520 -32.68361 -32.24089 -31.06646 -30.67010 -27.93025 -26.00947 -25.73468 -25.05311 -24.30730 -23.08601 -22.08116 -21.48087 -20.45275 -19.19531 -18.78774 -18.50384 -18.13318 -16.89455 -16.67830 -16.66529 -16.10393 -15.78855 -15.56020 -15.43378 -15.24059 -15.13069 -14.93631 -14.65937 -14.42169 -14.17159 -13.92535 -13.87688 -13.44464 -13.19392 -13.02906 -12.75308 -12.70379 -12.61982 -12.43069 -12.40567 -12.06460 -11.87600 -11.63101 -11.54018 -11.28418 -11.17616 -11.08998 -10.97429 -10.44023 -10.32792 -9.89753 -9.73728 -9.28751 -8.54079 -7.66749 -5.11069 -0.77940 -0.39563 0.86467 1.45084 1.48373 1.53758 1.64007 2.32295 2.44173 2.59681 3.09667 3.18465 3.40938 3.55741 3.63384 3.73270 3.81662 3.88124 4.03818 4.08598 4.22050 4.25113 4.32173 4.35121 4.43992 4.63700 4.70161 4.71990 4.75865 4.86792 4.90247 4.96217 4.96396 5.06196 5.08554 5.31764 5.35037 5.38794 5.43323 5.45501 5.47025 5.47693 5.67175 5.67633 5.78798 5.85201 5.91979 6.00890 6.50207 6.74226 6.84804 7.25464 7.60682 8.00101 8.49883 9.31237 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003188 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.999582 B = 8780.636312 C =10292.112039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C -0.034 4.034 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.287 1.287 7 C -0.285 4.285 8 H 0.057 0.943 9 N -0.596 5.596 10 C 0.150 3.850 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.141 3.859 15 H 0.084 0.916 16 N -0.714 5.714 17 C 0.538 3.462 18 O -0.532 6.532 19 C -0.195 4.195 20 C 0.161 3.839 21 N -0.489 5.489 22 C 0.115 3.885 23 C -0.114 4.114 24 C -0.080 4.080 25 C -0.113 4.113 26 C -0.101 4.101 27 C -0.125 4.125 28 C -0.004 4.004 29 C 0.166 3.834 30 H 0.246 0.754 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.403 0.597 40 H 0.186 0.814 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.048 0.952 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.711 -6.539 10.026 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.234 4.234 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.214 1.214 7 C -0.415 4.415 8 H 0.075 0.925 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.177 4.177 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.101 0.899 16 N -0.367 5.367 17 C 0.322 3.678 18 O -0.408 6.408 19 C -0.201 4.201 20 C -0.013 4.013 21 N -0.196 5.196 22 C -0.005 4.005 23 C -0.132 4.132 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.031 4.031 29 C 0.041 3.959 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.239 0.761 40 H 0.203 0.797 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.159 0.841 46 H 0.067 0.933 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -16.876 -6.392 10.079 20.670 hybrid contribution 1.080 1.795 -0.700 2.209 sum -15.796 -4.597 9.379 18.937 Atomic orbital electron populations 1.70053 1.04454 1.25392 1.50707 1.25553 0.96002 1.00112 1.01714 0.85806 0.77840 0.81734 0.77728 1.20676 1.22929 1.21377 1.19092 0.94244 0.86965 1.41203 0.92479 1.44137 1.35939 1.01590 1.50167 1.20579 0.96076 0.86761 0.94404 1.22817 0.95431 1.00106 0.99393 1.21247 0.96005 0.99863 0.96833 1.21338 1.01465 0.95205 0.96876 1.20753 0.84427 0.97821 0.93355 0.89861 1.46152 1.32440 1.09429 1.48682 1.18426 0.82935 0.84568 0.81826 1.90980 1.65393 1.34442 1.49971 1.21117 0.99465 0.96436 1.03054 1.23326 0.91163 0.97451 0.89362 1.67989 1.07856 1.28497 1.15296 1.19447 0.96249 0.88136 0.96696 1.21082 0.93813 1.00796 0.97534 1.21436 0.99410 0.91205 0.97947 1.21385 0.96144 0.99850 0.95661 1.21360 0.95658 0.96680 0.98264 1.19019 0.97492 0.96328 0.99837 1.22071 0.91163 0.98130 0.91729 1.20258 0.86424 0.98956 0.90286 0.94386 0.95633 0.93217 0.94834 0.90048 0.95436 0.91581 0.90161 0.89803 0.76080 0.79694 0.83263 0.81461 0.81988 0.83772 0.84072 0.93337 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.27 7.78 21.65 0.17 -51.10 16 2 C -0.03 -1.93 4.85 84.86 0.41 -1.51 16 3 Si 0.94 47.21 29.60 68.60 2.03 49.24 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.28 -15.93 9.61 84.03 0.81 -15.12 16 8 H 0.06 3.21 7.90 -2.91 -0.02 3.19 16 9 N -0.60 -29.37 2.60 -707.84 -1.84 -31.21 16 10 C 0.15 6.00 5.17 87.60 0.45 6.45 16 11 C -0.14 -4.80 6.41 31.87 0.20 -4.60 16 12 C -0.10 -3.61 5.66 30.35 0.17 -3.44 16 13 C -0.11 -3.55 5.24 29.57 0.15 -3.39 16 14 C 0.14 5.76 1.82 42.75 0.08 5.83 16 15 H 0.08 4.35 4.60 -2.38 -0.01 4.34 16 16 N -0.71 -24.33 4.86 -456.29 -2.22 -26.54 16 17 C 0.54 20.88 7.61 86.76 0.66 21.54 16 18 O -0.53 -26.39 13.66 -3.92 -0.05 -26.45 16 19 C -0.20 -6.15 5.89 -20.00 -0.12 -6.27 16 20 C 0.16 4.18 10.68 85.42 0.91 5.09 16 21 N -0.49 -13.03 10.30 -187.69 -1.93 -14.97 16 22 C 0.12 2.92 6.61 40.27 0.27 3.19 16 23 C -0.11 -2.09 9.97 22.34 0.22 -1.87 16 24 C -0.08 -1.04 9.94 22.05 0.22 -0.82 16 25 C -0.11 -1.53 9.96 22.05 0.22 -1.31 16 26 C -0.10 -1.95 9.77 22.34 0.22 -1.74 16 27 C -0.12 -3.22 5.74 -21.29 -0.12 -3.35 16 28 C 0.00 -0.13 9.46 23.02 0.22 0.09 16 29 C 0.17 7.75 4.63 83.58 0.39 8.14 16 30 H 0.25 15.14 8.06 -92.71 -0.75 14.40 16 31 H 0.03 1.04 7.99 -2.39 -0.02 1.02 16 32 H 0.05 1.75 6.88 -2.38 -0.02 1.73 16 33 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.03 1.24 6.82 -2.39 -0.02 1.23 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 2.32 6.28 -2.39 -0.01 2.31 16 38 H 0.08 2.20 8.03 -2.39 -0.02 2.18 16 39 H 0.40 10.00 6.61 -92.71 -0.61 9.39 16 40 H 0.19 3.55 6.37 -2.91 -0.02 3.53 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 43 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 45 H 0.14 4.48 7.70 -2.91 -0.02 4.45 16 46 H 0.05 2.73 5.79 -2.39 -0.01 2.71 16 47 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -74.17 366.95 1.93 -72.24 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.42 Total: 21.88 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.36 Total: 6.91 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -5.82 Total: -123.82 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -74.17 1.93 -72.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034420610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.870 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds