Wall clock time and date at job start Tue Mar 31 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99890 * 2 1 4 4 H 1.48496 * 109.47233 * 239.99701 * 3 2 1 5 5 H 1.48496 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47050 * 119.99552 * 3 2 1 7 7 C 1.38807 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00483 * 195.67583 * 7 2 1 9 9 N 1.36944 * 119.99777 * 15.67098 * 7 2 1 10 10 C 1.44576 * 118.64749 * 206.52649 * 9 7 2 11 11 C 1.54867 * 109.60249 * 270.70398 * 10 9 7 12 12 C 1.47096 * 110.31999 * 288.73526 * 11 10 9 13 13 C 1.52723 * 114.22906 * 62.83268 * 12 11 10 14 14 C 1.50883 * 109.27262 * 274.82909 * 13 12 11 15 15 H 1.09001 * 109.36857 * 331.92918 * 14 13 12 16 16 N 1.46497 * 109.36862 * 212.18122 * 14 13 12 17 17 C 1.34771 * 120.00115 * 154.74460 * 16 14 13 18 18 O 1.21549 * 120.00147 * 0.02562 * 17 16 14 19 19 C 1.47883 * 120.00107 * 179.97438 * 17 16 14 20 20 C 1.40577 * 119.70740 * 0.02562 * 19 17 16 21 21 C 1.35815 * 120.74042 * 180.02562 * 20 19 17 22 22 C 1.40551 * 119.98016 * 359.97438 * 21 20 19 23 23 C 1.40814 * 121.13729 * 179.97438 * 22 21 20 24 24 C 1.36555 * 118.20243 * 180.02562 * 23 22 21 25 25 C 1.39418 * 119.93797 * 0.27649 * 24 23 22 26 26 N 1.31023 * 121.71274 * 359.40983 * 25 24 23 27 27 C 1.33755 * 121.34464 * 0.59825 * 26 25 24 28 28 C 1.38409 * 119.70846 * 180.02562 * 19 17 16 29 29 C 1.47609 * 118.63916 * 26.50254 * 9 7 2 30 30 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.44887 * 30.73918 * 10 9 7 32 32 H 1.08998 * 109.45043 * 150.66266 * 10 9 7 33 33 H 1.09004 * 109.32876 * 48.99348 * 11 10 9 34 34 H 1.08996 * 109.33251 * 168.64145 * 11 10 9 35 35 H 1.08996 * 108.51065 * 184.05273 * 12 11 10 36 36 H 1.09000 * 108.50821 * 301.70130 * 12 11 10 37 37 H 1.09000 * 109.45075 * 154.94010 * 13 12 11 38 38 H 1.08998 * 109.61379 * 34.81999 * 13 12 11 39 39 H 0.96998 * 119.99792 * 334.74730 * 16 14 13 40 40 H 1.07999 * 119.63000 * 0.02562 * 20 19 17 41 41 H 1.07995 * 120.00918 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.90483 * 0.02562 * 23 22 21 43 43 H 1.08003 * 120.03385 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.14691 * 179.71791 * 25 24 23 45 45 H 1.08000 * 120.23104 * 359.95794 * 28 19 17 46 46 H 1.08998 * 108.94682 * 17.20653 * 29 9 7 47 47 H 1.08998 * 108.94931 * 258.57381 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0601 -1.2193 0.2532 9 7 1.3638 -2.3661 -0.3193 10 6 1.8690 -3.6097 0.2180 11 6 2.9227 -4.2036 -0.7491 12 6 2.2707 -4.7087 -1.9672 13 6 1.5635 -3.6346 -2.7909 14 6 0.1716 -3.4260 -2.2472 15 1 -0.1776 -4.3488 -1.7839 16 7 -0.7290 -3.0621 -3.3439 17 6 -2.0492 -3.3136 -3.2434 18 8 -2.4928 -3.8420 -2.2428 19 6 -2.9583 -2.9457 -4.3503 20 6 -2.4387 -2.3343 -5.5046 21 6 -3.2546 -1.9872 -6.5334 22 6 -4.6349 -2.2392 -6.4510 23 6 -5.5031 -1.8890 -7.5029 24 6 -6.8335 -2.1609 -7.3592 25 6 -7.2983 -2.7641 -6.1914 26 7 -6.4871 -3.0941 -5.2168 27 6 -5.1733 -2.8554 -5.2941 28 6 -4.3132 -3.2063 -4.2405 29 6 0.1797 -2.2994 -1.1980 30 1 -0.4850 0.8401 -0.0004 31 1 2.3302 -3.4250 1.1882 32 1 1.0463 -4.3149 0.3360 33 1 3.6414 -3.4298 -1.0190 34 1 3.4440 -5.0236 -0.2554 35 1 3.0266 -5.1835 -2.5927 36 1 1.5375 -5.4623 -1.6800 37 1 1.5033 -3.9557 -3.8308 38 1 2.1215 -2.7003 -2.7301 39 1 -0.3750 -2.6401 -4.1423 40 1 -1.3789 -2.1384 -5.5741 41 1 -2.8429 -1.5177 -7.4145 42 1 -5.1270 -1.4180 -8.3991 43 1 -7.5258 -1.9052 -8.1478 44 1 -8.3537 -2.9692 -6.0893 45 1 -4.7061 -3.6768 -3.3514 46 1 0.1735 -1.3378 -1.7112 47 1 -0.7194 -2.3784 -0.5869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034451632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:41 Heat of formation + Delta-G solvation = 43.059287 kcal Electronic energy + Delta-G solvation = -29025.918143 eV Core-core repulsion = 25174.017563 eV Total energy + Delta-G solvation = -3851.900581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06932 -39.61486 -37.81987 -36.71927 -34.46803 -33.69632 -33.53381 -31.32164 -30.71732 -30.19665 -29.63289 -26.11482 -25.08839 -24.20627 -24.05780 -22.99676 -22.22305 -20.88141 -20.05195 -19.26532 -18.35701 -17.63690 -17.05987 -16.62304 -16.12985 -15.62267 -15.32129 -14.73398 -14.69192 -14.43132 -14.23060 -14.14849 -13.89596 -13.76125 -13.50634 -13.30667 -13.22912 -12.78322 -12.42781 -12.08089 -12.02339 -11.84137 -11.76846 -11.30410 -11.12357 -10.98304 -10.78857 -10.69757 -10.43911 -10.26566 -10.14916 -9.95165 -9.78449 -9.76047 -9.62175 -9.47215 -9.02934 -8.58381 -8.46386 -8.35373 -6.62869 -5.74276 -3.19465 0.07780 0.44019 1.69959 2.38739 3.32813 3.38627 3.44181 3.44502 3.45268 3.98242 4.07509 4.31192 4.45348 4.51480 4.59132 4.69277 4.78082 4.94307 4.97807 5.22621 5.26952 5.34530 5.47376 5.53889 5.63733 5.64114 5.65513 5.71925 5.82135 5.92942 6.03351 6.07348 6.12917 6.21938 6.27155 6.34210 6.49146 6.53273 6.62085 6.66248 6.67944 6.79116 6.91056 6.97606 7.12031 7.39671 7.66132 7.76693 7.85019 7.89007 8.48650 8.54518 9.26027 9.93200 10.38636 11.31822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002859 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.238508 B = 9791.527146 C =10788.683877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.119 3.881 15 H 0.075 0.925 16 N -0.709 5.709 17 C 0.553 3.447 18 O -0.529 6.529 19 C -0.107 4.107 20 C -0.087 4.087 21 C -0.103 4.103 22 C -0.089 4.089 23 C -0.061 4.061 24 C -0.172 4.172 25 C 0.127 3.873 26 N -0.465 5.465 27 C 0.117 3.883 28 C -0.026 4.026 29 C 0.175 3.825 30 H 0.254 0.746 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.394 0.606 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.077 0.923 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -5.691 -18.319 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.014 3.986 15 H 0.093 0.907 16 N -0.360 5.360 17 C 0.339 3.661 18 O -0.406 6.406 19 C -0.112 4.112 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.092 4.092 23 C -0.087 4.087 24 C -0.192 4.192 25 C -0.047 4.047 26 N -0.172 5.172 27 C -0.003 4.003 28 C -0.045 4.045 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.177 0.823 45 H 0.169 0.831 46 H 0.095 0.905 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.521 -6.358 -16.728 19.821 hybrid contribution 0.894 1.666 -1.277 2.282 sum -7.627 -4.692 -18.005 20.109 Atomic orbital electron populations 1.70081 1.05125 1.25477 1.53610 1.25060 0.95228 0.98327 1.00796 0.86425 0.78903 0.83661 0.78083 1.21131 1.21724 1.20896 1.19147 0.92383 0.84901 1.42536 0.91661 1.43530 1.32464 1.02074 1.52757 1.20740 0.94111 0.88259 0.94298 1.21505 1.00194 0.99692 0.97388 1.20251 0.98966 0.97413 0.97013 1.21316 0.95666 1.00924 0.97459 1.21837 0.87864 1.00922 0.87996 0.90656 1.46064 1.06921 1.62105 1.20937 1.18093 0.82446 0.79197 0.86345 1.90793 1.75977 1.42908 1.30962 1.20075 0.94148 1.01642 0.95361 1.21024 1.00450 0.96633 0.92430 1.20848 0.91623 1.00342 0.99397 1.18947 0.95070 0.99904 0.95232 1.21503 0.93324 0.96220 0.97656 1.21946 0.96562 1.00971 0.99695 1.23007 0.99867 0.93078 0.88744 1.68046 1.03063 1.16877 1.29255 1.18783 0.90463 0.97712 0.93360 1.21270 0.90928 0.94888 0.97459 1.21315 0.89188 0.95046 0.89622 0.93634 0.93559 0.94905 0.92072 0.93446 0.93689 0.93184 0.93131 0.89994 0.77135 0.84938 0.84690 0.84246 0.84434 0.82256 0.83085 0.90451 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.01 55.49 0.61 -25.64 16 2 C 0.00 0.13 4.87 -17.44 -0.08 0.05 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.98 9.44 -15.06 -0.14 -7.12 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.43 2.27 -172.09 -0.39 -14.82 16 10 C 0.15 3.24 5.65 -4.08 -0.02 3.21 16 11 C -0.15 -2.56 5.74 -28.58 -0.16 -2.73 16 12 C -0.10 -1.56 5.17 -29.71 -0.15 -1.72 16 13 C -0.12 -1.91 5.07 -27.94 -0.14 -2.05 16 14 C 0.12 2.26 2.27 -68.50 -0.16 2.10 16 15 H 0.08 1.54 6.73 -51.93 -0.35 1.19 16 16 N -0.71 -11.66 4.92 -55.29 -0.27 -11.93 16 17 C 0.55 9.86 7.73 -12.31 -0.10 9.76 16 18 O -0.53 -11.53 15.95 5.32 0.08 -11.45 16 19 C -0.11 -1.57 5.87 -105.00 -0.62 -2.18 16 20 C -0.09 -0.98 9.44 -39.57 -0.37 -1.35 16 21 C -0.10 -1.01 9.74 -39.58 -0.39 -1.40 16 22 C -0.09 -0.99 5.75 -106.73 -0.61 -1.60 16 23 C -0.06 -0.50 9.88 -39.22 -0.39 -0.88 16 24 C -0.17 -1.26 10.03 -39.75 -0.40 -1.66 16 25 C 0.13 1.16 11.15 -17.46 -0.19 0.97 16 26 N -0.46 -6.05 10.34 -10.98 -0.11 -6.16 16 27 C 0.12 1.59 6.60 -84.87 -0.56 1.03 16 28 C -0.03 -0.39 9.56 -38.68 -0.37 -0.76 16 29 C 0.17 4.20 4.25 -2.94 -0.01 4.19 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 32 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 37 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 39 H 0.39 5.17 6.53 -40.82 -0.27 4.91 16 40 H 0.13 1.18 6.34 -52.49 -0.33 0.85 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.15 2.41 7.60 -52.49 -0.40 2.01 16 46 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16 47 H 0.03 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -33.66 376.81 -10.92 -44.58 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.62 Total: 5.37 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -4.87 Total: -2.13 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.16 Total: -58.55 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.66 -10.92 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034451632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.635 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds