Wall clock time and date at job start Tue Mar 31 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46949 * 300.00104 * 3 2 1 6 6 H 1.48504 * 109.47012 * 59.99525 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00467 * 158.79689 * 7 2 1 9 9 N 1.36938 * 119.99688 * 338.79517 * 7 2 1 10 10 C 1.43436 * 120.53653 * 156.44836 * 9 7 2 11 11 C 1.54900 * 116.07811 * 271.59169 * 10 9 7 12 12 C 1.54850 * 110.14214 * 318.63920 * 11 10 9 13 13 C 1.50128 * 110.81132 * 321.13212 * 12 11 10 14 14 C 1.52528 * 105.41780 * 97.68075 * 13 12 11 15 15 H 1.09005 * 108.39917 * 31.74811 * 14 13 12 16 16 N 1.46495 * 108.52495 * 149.35311 * 14 13 12 17 17 C 1.34776 * 120.00240 * 209.72366 * 16 14 13 18 18 O 1.21545 * 120.00273 * 359.97438 * 17 16 14 19 19 C 1.47884 * 120.00072 * 179.97438 * 17 16 14 20 20 C 1.40579 * 119.70672 * 0.02562 * 19 17 16 21 21 C 1.35814 * 120.73759 * 179.97438 * 20 19 17 22 22 C 1.40545 * 119.98217 * 0.02562 * 21 20 19 23 23 C 1.40820 * 121.13925 * 179.97438 * 22 21 20 24 24 C 1.36554 * 118.20281 * 180.27900 * 23 22 21 25 25 C 1.39413 * 119.93681 * 359.55052 * 24 23 22 26 26 N 1.31024 * 121.71652 * 0.43165 * 25 24 23 27 27 C 1.33752 * 121.34627 * 359.80076 * 26 25 24 28 28 C 1.38407 * 119.70774 * 180.02562 * 19 17 16 29 29 C 1.46238 * 114.28010 * 270.59701 * 14 13 12 30 30 H 0.97003 * 119.99872 * 0.02562 * 1 2 3 31 31 H 1.08997 * 108.16143 * 33.30347 * 10 9 7 32 32 H 1.08996 * 108.16244 * 150.08479 * 10 9 7 33 33 H 1.09000 * 109.36166 * 78.84270 * 11 10 9 34 34 H 1.09004 * 109.35874 * 198.57077 * 11 10 9 35 35 H 1.09002 * 109.20864 * 81.47318 * 12 11 10 36 36 H 1.08994 * 109.20732 * 200.79260 * 12 11 10 37 37 H 1.09003 * 110.24723 * 338.71193 * 13 12 11 38 38 H 1.08998 * 110.25195 * 216.65866 * 13 12 11 39 39 H 0.97008 * 120.00109 * 29.71957 * 16 14 13 40 40 H 1.08003 * 119.63081 * 359.97438 * 20 19 17 41 41 H 1.07995 * 120.00965 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.89649 * 0.02562 * 23 22 21 43 43 H 1.07998 * 120.02910 * 179.72205 * 24 23 22 44 44 H 1.08005 * 119.14618 * 180.23640 * 25 24 23 45 45 H 1.07998 * 120.23122 * 359.97438 * 28 19 17 46 46 H 1.09004 * 109.84474 * 177.91009 * 29 14 13 47 47 H 1.08998 * 109.84721 * 298.89723 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0355 -1.2340 -0.3377 9 7 1.3951 -2.3477 0.4300 10 6 1.8607 -3.6324 -0.0061 11 6 1.2449 -4.1689 -1.3223 12 6 -0.2749 -3.8748 -1.3587 13 6 -0.8882 -4.0677 -0.0021 14 6 -0.9668 -2.6727 0.6095 15 1 -1.1201 -1.9527 -0.1944 16 7 -2.1251 -2.6216 1.5049 17 6 -2.7772 -1.4579 1.6976 18 8 -2.4040 -0.4507 1.1288 19 6 -3.9469 -1.4066 2.6011 20 6 -4.3730 -2.5751 3.2562 21 6 -5.4442 -2.5517 4.0908 22 6 -6.1401 -1.3499 4.3068 23 6 -7.2542 -1.2979 5.1665 24 6 -7.8893 -0.0999 5.3281 25 6 -7.4240 1.0303 4.6575 26 7 -6.3867 0.9789 3.8587 27 6 -5.7227 -0.1639 3.6531 28 6 -4.6124 -0.2084 2.7941 29 6 0.2220 -2.2794 1.3649 30 1 -0.4850 0.8401 -0.0004 31 1 2.9416 -3.5763 -0.1350 32 1 1.6519 -4.3551 0.7825 33 1 1.7272 -3.6839 -2.1710 34 1 1.4041 -5.2456 -1.3831 35 1 -0.4334 -2.8456 -1.6809 36 1 -0.7539 -4.5497 -2.0680 37 1 -0.2567 -4.7125 0.6091 38 1 -1.8865 -4.4951 -0.0966 39 1 -2.4229 -3.4254 1.9592 40 1 -3.8425 -3.5018 3.0941 41 1 -5.7611 -3.4563 4.5884 42 1 -7.5995 -2.1826 5.6809 43 1 -8.7496 -0.0275 5.9770 44 1 -7.9337 1.9721 4.7976 45 1 -4.2799 0.6859 2.2882 46 1 0.1041 -1.2616 1.7370 47 1 0.3734 -2.9641 2.1994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034451633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:44 Heat of formation + Delta-G solvation = 38.653532 kcal Electronic energy + Delta-G solvation = -29525.552189 eV Core-core repulsion = 25673.460561 eV Total energy + Delta-G solvation = -3852.091628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88048 -40.85396 -39.21441 -37.58799 -35.79032 -34.86562 -34.43006 -32.68881 -32.20664 -30.98921 -30.74573 -27.95874 -26.11133 -25.76194 -24.82255 -24.39029 -23.10181 -22.03534 -21.51074 -20.47833 -19.31946 -18.56995 -18.43244 -17.81647 -17.01734 -16.89090 -16.68569 -16.08086 -15.75020 -15.46636 -15.42842 -15.27070 -15.11159 -14.86777 -14.75034 -14.49405 -14.01867 -13.92110 -13.87859 -13.45025 -13.22350 -13.05864 -12.87193 -12.69065 -12.65441 -12.46534 -12.39092 -12.03968 -11.88830 -11.63158 -11.52226 -11.27858 -11.18141 -11.09015 -10.64681 -10.46055 -10.40125 -9.88896 -9.72630 -9.29865 -8.56056 -7.68933 -5.13462 -0.70737 -0.31989 0.92145 1.41235 1.45443 1.53787 1.60600 2.31829 2.49580 2.57453 3.14122 3.32837 3.39280 3.57382 3.68021 3.82437 3.95791 3.99993 4.03998 4.07191 4.13639 4.24555 4.31822 4.36029 4.59651 4.63487 4.69998 4.74817 4.77075 4.85089 4.90554 4.95311 4.99852 5.07943 5.10570 5.26733 5.31207 5.32957 5.37895 5.45781 5.46718 5.55476 5.66691 5.66869 5.77853 5.81752 5.92124 6.01733 6.47416 6.86627 6.94788 7.23490 7.63263 7.98505 8.47596 9.28649 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.003184 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.013234 B = 8792.092696 C =10295.995637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C -0.037 4.037 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.299 1.299 6 H -0.303 1.303 7 C -0.279 4.279 8 H 0.060 0.940 9 N -0.597 5.597 10 C 0.149 3.851 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.109 4.109 14 C 0.139 3.861 15 H 0.080 0.920 16 N -0.710 5.710 17 C 0.526 3.474 18 O -0.538 6.538 19 C -0.112 4.112 20 C -0.098 4.098 21 C -0.081 4.081 22 C -0.105 4.105 23 C -0.054 4.054 24 C -0.165 4.165 25 C 0.124 3.876 26 N -0.520 5.520 27 C 0.095 3.905 28 C -0.065 4.065 29 C 0.166 3.834 30 H 0.243 0.757 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.405 0.595 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.181 0.819 44 H 0.185 0.815 45 H 0.108 0.892 46 H 0.045 0.955 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.149 -12.780 12.750 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.237 4.237 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.231 1.231 7 C -0.409 4.409 8 H 0.078 0.922 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.178 4.178 12 C -0.140 4.140 13 C -0.147 4.147 14 C 0.034 3.966 15 H 0.098 0.902 16 N -0.364 5.364 17 C 0.311 3.689 18 O -0.414 6.414 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.099 4.099 22 C -0.107 4.107 23 C -0.079 4.079 24 C -0.185 4.185 25 C -0.049 4.049 26 N -0.229 5.229 27 C -0.025 4.025 28 C -0.085 4.085 29 C 0.041 3.959 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.242 0.758 40 H 0.179 0.821 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.198 0.802 44 H 0.202 0.798 45 H 0.126 0.874 46 H 0.063 0.937 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.543 -11.212 11.822 23.942 hybrid contribution 0.438 1.042 -0.063 1.132 sum -17.105 -10.170 11.759 23.115 Atomic orbital electron populations 1.70084 1.04546 1.25084 1.51174 1.25582 0.95964 1.00229 1.01929 0.85679 0.79053 0.82426 0.76047 1.19346 1.22634 1.23053 1.19169 0.94167 0.86847 1.40732 0.92229 1.44171 1.35433 1.01639 1.50639 1.20593 0.96114 0.86682 0.94450 1.22828 0.95304 1.00197 0.99425 1.21223 0.96117 0.99731 0.96974 1.21293 1.01429 0.95103 0.96846 1.20750 0.84401 0.97882 0.93557 0.90172 1.46097 1.31507 1.10471 1.48350 1.18798 0.83429 0.84372 0.82264 1.90971 1.66716 1.34938 1.48787 1.20114 0.96527 0.95310 0.99732 1.21246 0.97513 0.96974 0.95904 1.21359 0.93810 0.97630 0.97080 1.19293 0.98398 0.94228 0.98819 1.22019 0.91486 1.00449 0.93951 1.22398 1.02347 0.92703 1.01020 1.23672 0.90635 1.00854 0.89755 1.68002 1.09280 1.27570 1.18043 1.18835 0.95672 0.90377 0.97607 1.21104 0.93550 0.97669 0.96172 1.20251 0.86355 0.98846 0.90413 0.94659 0.95502 0.92999 0.94897 0.89861 0.95752 0.91541 0.89965 0.89789 0.75830 0.82150 0.79919 0.79830 0.80150 0.79820 0.87357 0.93686 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.50 7.83 21.65 0.17 -53.33 16 2 C -0.04 -2.20 4.86 84.86 0.41 -1.78 16 3 Si 0.94 48.68 29.60 68.60 2.03 50.71 16 4 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 6 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 7 C -0.28 -15.84 9.61 84.03 0.81 -15.04 16 8 H 0.06 3.39 7.90 -2.91 -0.02 3.37 16 9 N -0.60 -29.76 2.60 -707.84 -1.84 -31.60 16 10 C 0.15 6.00 5.18 87.60 0.45 6.45 16 11 C -0.14 -4.83 6.41 31.88 0.20 -4.62 16 12 C -0.10 -3.70 5.65 30.30 0.17 -3.53 16 13 C -0.11 -3.51 5.25 29.51 0.16 -3.35 16 14 C 0.14 5.81 1.84 42.75 0.08 5.88 16 15 H 0.08 4.34 4.55 -2.38 -0.01 4.33 16 16 N -0.71 -24.85 4.82 -456.17 -2.20 -27.05 16 17 C 0.53 21.65 7.68 86.80 0.67 22.32 16 18 O -0.54 -28.80 13.87 -3.86 -0.05 -28.86 16 19 C -0.11 -3.67 5.87 -20.11 -0.12 -3.79 16 20 C -0.10 -2.10 9.44 22.28 0.21 -1.89 16 21 C -0.08 -1.32 9.74 22.27 0.22 -1.10 16 22 C -0.11 -2.19 5.75 -21.23 -0.12 -2.31 16 23 C -0.05 -0.66 9.88 22.51 0.22 -0.44 16 24 C -0.17 -1.91 10.03 22.16 0.22 -1.69 16 25 C 0.12 2.29 11.15 85.10 0.95 3.23 16 26 N -0.52 -15.20 10.34 -188.65 -1.95 -17.15 16 27 C 0.09 2.85 6.60 40.25 0.27 3.11 16 28 C -0.06 -2.34 9.56 22.85 0.22 -2.12 16 29 C 0.17 7.92 4.67 83.58 0.39 8.31 16 30 H 0.24 15.68 8.08 -92.71 -0.75 14.94 16 31 H 0.03 1.09 7.99 -2.39 -0.02 1.07 16 32 H 0.05 1.81 6.87 -2.39 -0.02 1.79 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.02 1.12 6.82 -2.39 -0.02 1.11 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.35 6.28 -2.39 -0.01 2.34 16 38 H 0.08 2.21 8.04 -2.39 -0.02 2.19 16 39 H 0.40 9.97 6.60 -92.70 -0.61 9.36 16 40 H 0.16 2.31 6.34 -2.91 -0.02 2.29 16 41 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 45 H 0.11 4.63 7.60 -2.91 -0.02 4.61 16 46 H 0.04 2.60 6.06 -2.38 -0.01 2.59 16 47 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 Total: -1.00 -83.67 367.44 1.98 -81.69 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.41 Total: 17.92 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.40 Total: 7.66 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -5.82 Total: -129.13 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -83.67 1.98 -81.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034451633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.346 kcal (2) G-P(sol) polarization free energy of solvation -83.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds