Wall clock time and date at job start Tue Mar 31 2020 22:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99534 * 2 1 4 4 H 1.48493 * 109.47458 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46788 * 239.99586 * 3 2 1 6 6 H 1.48499 * 109.46734 * 120.00001 * 3 2 1 7 7 C 1.38805 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00543 * 144.28733 * 7 2 1 9 9 N 1.36940 * 119.99905 * 324.28459 * 7 2 1 10 10 C 1.44588 * 118.64389 * 330.41904 * 9 7 2 11 11 C 1.54859 * 109.60129 * 270.70512 * 10 9 7 12 12 C 1.47094 * 110.32457 * 288.73556 * 11 10 9 13 13 C 1.52564 * 114.32695 * 62.79766 * 12 11 10 14 14 C 1.50882 * 109.35988 * 274.99198 * 13 12 11 15 15 H 1.08994 * 109.36493 * 331.69524 * 14 13 12 16 16 N 1.46500 * 109.36305 * 212.07976 * 14 13 12 17 17 C 1.34775 * 120.00283 * 155.00255 * 16 14 13 18 18 O 1.21607 * 119.99587 * 359.97438 * 17 16 14 19 19 C 1.47443 * 120.00629 * 179.97438 * 17 16 14 20 20 C 1.38862 * 120.45924 * 352.84632 * 19 17 16 21 21 C 1.38906 * 120.67659 * 179.76726 * 20 19 17 22 22 C 1.36372 * 121.27217 * 0.51584 * 21 20 19 23 23 C 1.40394 * 119.98135 * 359.74703 * 22 21 20 24 24 C 1.40473 * 121.94776 * 179.97438 * 23 22 21 25 25 N 1.31276 * 119.88201 * 180.02562 * 24 23 22 26 26 C 1.32546 * 122.73313 * 359.97438 * 25 24 23 27 27 C 1.36332 * 121.82524 * 359.97438 * 26 25 24 28 28 C 1.40293 * 118.69875 * 0.02562 * 27 26 25 29 29 C 1.47603 * 118.64647 * 150.15367 * 9 7 2 30 30 H 0.96999 * 119.99780 * 173.57765 * 1 2 3 31 31 H 1.09005 * 109.44778 * 30.74733 * 10 9 7 32 32 H 1.08995 * 109.44633 * 150.68835 * 10 9 7 33 33 H 1.09009 * 109.32678 * 48.99733 * 11 10 9 34 34 H 1.09003 * 109.32716 * 168.64078 * 11 10 9 35 35 H 1.09000 * 108.51165 * 184.05722 * 12 11 10 36 36 H 1.09000 * 108.50725 * 301.70426 * 12 11 10 37 37 H 1.09002 * 109.49134 * 34.96115 * 13 12 11 38 38 H 1.09002 * 109.49046 * 154.99904 * 13 12 11 39 39 H 0.97006 * 120.00441 * 334.99455 * 16 14 13 40 40 H 1.08005 * 119.66026 * 0.02693 * 20 19 17 41 41 H 1.07998 * 119.36301 * 180.28904 * 21 20 19 42 42 H 1.07998 * 120.00444 * 179.71907 * 22 21 20 43 43 H 1.08003 * 120.05986 * 0.04439 * 24 23 22 44 44 H 1.08003 * 119.08670 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.65252 * 179.97438 * 27 26 25 46 46 H 1.09000 * 108.94475 * 258.58186 * 29 9 7 47 47 H 1.09003 * 108.94184 * 17.20269 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9380 -1.2898 -0.5465 9 7 1.5188 -2.2768 0.6913 10 6 0.7209 -2.0346 1.8725 11 6 1.6424 -1.9539 3.1144 12 6 2.1727 -3.2856 3.4445 13 6 3.0536 -3.8980 2.3598 14 6 2.1837 -4.5987 1.3455 15 1 1.2691 -4.9416 1.8292 16 7 2.9046 -5.7523 0.8017 17 6 2.2203 -6.7958 0.2926 18 8 1.0043 -6.7800 0.2851 19 6 2.9457 -7.9567 -0.2552 20 6 4.3276 -7.9245 -0.3879 21 6 5.0161 -9.0174 -0.8990 22 6 4.3600 -10.1457 -1.2940 23 6 2.9625 -10.2200 -1.1827 24 6 2.2450 -11.3614 -1.5774 25 7 0.9381 -11.3869 -1.4559 26 6 0.2437 -10.3685 -0.9685 27 6 0.8478 -9.2176 -0.5573 28 6 2.2435 -9.1166 -0.6569 29 6 1.8204 -3.6345 0.1971 30 1 -0.4850 -0.8348 -0.0940 31 1 0.1810 -1.0944 1.7593 32 1 0.0081 -2.8490 2.0021 33 1 2.4711 -1.2772 2.9054 34 1 1.0724 -1.5748 3.9626 35 1 2.7566 -3.2080 4.3617 36 1 1.3334 -3.9571 3.6257 37 1 3.6244 -3.1107 1.8674 38 1 3.7387 -4.6163 2.8101 39 1 3.8746 -5.7652 0.8079 40 1 4.8731 -7.0423 -0.0868 41 1 6.0914 -8.9711 -0.9886 42 1 4.9154 -10.9818 -1.6927 43 1 2.7677 -12.2166 -1.9798 44 1 -0.8306 -10.4529 -0.8950 45 1 0.2633 -8.3993 -0.1634 46 1 0.9488 -4.0205 -0.3315 47 1 2.6583 -3.5800 -0.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034533606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:47 Heat of formation + Delta-G solvation = 45.935632 kcal Electronic energy + Delta-G solvation = -29252.830512 eV Core-core repulsion = 25401.054660 eV Total energy + Delta-G solvation = -3851.775853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27643 -39.68105 -37.94943 -37.33081 -34.94112 -33.56486 -33.10520 -31.68192 -31.01119 -30.40287 -29.34955 -26.01168 -24.96315 -24.48700 -23.85865 -23.58512 -22.54926 -20.81012 -20.07698 -19.33230 -18.27342 -17.96692 -17.24129 -16.76248 -16.40643 -15.96031 -15.35504 -15.30946 -14.92228 -14.63081 -14.31776 -14.13692 -13.90989 -13.72962 -13.60568 -13.39167 -13.02470 -12.82466 -12.54958 -12.36408 -12.31620 -12.27498 -11.88941 -11.74636 -11.18383 -10.77431 -10.67831 -10.50227 -10.37469 -10.20614 -10.04802 -10.01912 -10.01649 -9.86141 -9.45586 -9.42501 -9.37071 -8.99217 -8.36206 -8.24154 -6.83627 -6.09477 -3.25706 -0.14524 0.60249 1.45691 2.48088 3.08037 3.16348 3.48495 3.52810 3.70514 3.88442 4.21276 4.27339 4.32796 4.43375 4.58929 4.62590 4.68030 4.79953 5.04049 5.12585 5.21970 5.25925 5.31123 5.40446 5.49794 5.52578 5.60447 5.68969 5.73222 5.78896 5.83199 5.89811 5.99950 6.10716 6.25794 6.29170 6.37343 6.41270 6.49151 6.58041 6.63844 6.69320 6.75150 6.80151 6.86310 7.15725 7.38524 7.52347 7.76289 8.06143 8.21892 8.56704 9.14447 9.85016 10.23842 11.10254 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.002627 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.055806 B =10655.622806 C =10784.689982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C -0.016 4.016 3 Si 1.050 2.950 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.362 4.362 8 H 0.052 0.948 9 N -0.585 5.585 10 C 0.141 3.859 11 C -0.142 4.142 12 C -0.098 4.098 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.082 0.918 16 N -0.712 5.712 17 C 0.558 3.442 18 O -0.529 6.529 19 C -0.122 4.122 20 C -0.059 4.059 21 C -0.130 4.130 22 C -0.062 4.062 23 C -0.120 4.120 24 C 0.138 3.862 25 N -0.487 5.487 26 C 0.071 3.929 27 C -0.150 4.150 28 C 0.010 3.990 29 C 0.143 3.857 30 H 0.270 0.730 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.396 0.604 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.019 0.981 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.733 -19.998 1.658 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.220 4.220 3 Si 0.880 3.120 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.491 4.491 8 H 0.070 0.930 9 N -0.308 5.308 10 C 0.013 3.987 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.152 4.152 14 C 0.027 3.973 15 H 0.100 0.900 16 N -0.363 5.363 17 C 0.345 3.655 18 O -0.408 6.408 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.148 4.148 22 C -0.082 4.082 23 C -0.122 4.122 24 C -0.034 4.034 25 N -0.195 5.195 26 C -0.072 4.072 27 C -0.169 4.169 28 C 0.004 3.996 29 C 0.016 3.984 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.231 0.769 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.180 0.820 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.037 0.963 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.050 -18.989 1.517 21.090 hybrid contribution 1.330 -0.941 0.083 1.632 sum 10.380 -19.930 1.600 22.528 Atomic orbital electron populations 1.70770 1.07179 1.30222 1.44745 1.25672 0.95915 1.01429 0.99007 0.83753 0.75324 0.76686 0.76284 1.21184 1.22030 1.22032 1.19842 1.04490 0.91698 1.33081 0.93035 1.43609 1.61334 1.00060 1.25765 1.20958 0.92087 1.00998 0.84627 1.21362 1.01359 0.96103 0.99409 1.20258 0.98376 0.98133 0.96851 1.21260 0.98076 0.99655 0.96226 1.21605 0.95337 0.84763 0.95643 0.89992 1.46147 1.10035 1.18380 1.61694 1.18015 0.87254 0.82224 0.78034 1.90618 1.13332 1.80059 1.56756 1.19956 0.93773 0.94760 1.04000 1.21530 0.92890 0.98525 0.94968 1.20841 1.00703 0.93221 1.00017 1.21171 0.92544 0.98235 0.96250 1.19030 0.94881 0.95842 1.02492 1.23167 0.89847 0.95744 0.94662 1.67396 1.08815 1.30060 1.13191 1.22368 1.00478 0.88905 0.95417 1.22990 0.94484 1.00663 0.98780 1.17946 0.93945 0.92196 0.95469 1.21548 0.98295 0.85658 0.92874 0.91966 0.90090 0.95806 0.91680 0.93436 0.93541 0.93376 0.89967 0.92845 0.76892 0.84938 0.84777 0.84518 0.81969 0.82780 0.80634 0.96312 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 12.06 55.49 0.67 -25.52 16 2 C -0.02 -0.45 4.57 -17.43 -0.08 -0.53 16 3 Si 1.05 24.65 30.04 -169.99 -5.11 19.55 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.36 -9.79 9.17 -15.06 -0.14 -9.93 16 8 H 0.05 1.42 7.97 -52.49 -0.42 1.00 16 9 N -0.59 -14.14 2.10 -171.87 -0.36 -14.51 16 10 C 0.14 3.23 4.99 -4.08 -0.02 3.21 16 11 C -0.14 -2.75 5.74 -28.59 -0.16 -2.91 16 12 C -0.10 -1.59 5.16 -29.79 -0.15 -1.74 16 13 C -0.11 -1.77 5.06 -28.02 -0.14 -1.91 16 14 C 0.13 2.22 2.27 -68.32 -0.15 2.06 16 15 H 0.08 1.53 6.74 -51.93 -0.35 1.18 16 16 N -0.71 -9.78 4.93 -55.26 -0.27 -10.05 16 17 C 0.56 8.38 7.68 -12.51 -0.10 8.28 16 18 O -0.53 -9.69 13.17 5.27 0.07 -9.62 16 19 C -0.12 -1.51 5.90 -104.71 -0.62 -2.13 16 20 C -0.06 -0.53 9.51 -39.10 -0.37 -0.90 16 21 C -0.13 -0.93 9.92 -40.01 -0.40 -1.33 16 22 C -0.06 -0.46 9.79 -39.44 -0.39 -0.85 16 23 C -0.12 -1.25 5.74 -106.88 -0.61 -1.86 16 24 C 0.14 1.36 11.05 -16.95 -0.19 1.17 16 25 N -0.49 -5.89 10.30 -13.11 -0.14 -6.03 16 26 C 0.07 0.87 11.07 -17.93 -0.20 0.67 16 27 C -0.15 -2.04 9.27 -39.50 -0.37 -2.41 16 28 C 0.01 0.13 5.77 -106.55 -0.61 -0.48 16 29 C 0.14 3.03 5.86 -2.76 -0.02 3.02 16 30 H 0.27 8.11 7.71 -40.82 -0.31 7.80 16 31 H 0.08 2.13 5.19 -51.93 -0.27 1.86 16 32 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.06 1.37 8.14 -51.92 -0.42 0.94 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.77 7.35 -51.93 -0.38 0.39 16 37 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 38 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.40 4.15 6.63 -40.82 -0.27 3.88 16 40 H 0.13 0.89 6.45 -52.48 -0.34 0.55 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 45 H 0.18 2.67 5.07 -52.49 -0.27 2.40 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 1.07 7.83 -51.93 -0.41 0.66 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -32.67 371.67 -10.67 -43.34 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.41 Total: 5.82 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.72 Total: -8.58 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.10 Total: -56.11 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.11 Total: 19.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.67 -10.67 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034533606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.276 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds