Wall clock time and date at job start Tue Mar 31 2020 22:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99534 * 2 1 4 4 H 1.48493 * 109.47458 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46788 * 239.99586 * 3 2 1 6 6 H 1.48499 * 109.46734 * 120.00001 * 3 2 1 7 7 C 1.38805 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00543 * 144.28733 * 7 2 1 9 9 N 1.36940 * 119.99905 * 324.28459 * 7 2 1 10 10 C 1.44588 * 118.64389 * 330.41904 * 9 7 2 11 11 C 1.54859 * 109.60129 * 270.70512 * 10 9 7 12 12 C 1.47094 * 110.32457 * 288.73556 * 11 10 9 13 13 C 1.52564 * 114.32695 * 62.79766 * 12 11 10 14 14 C 1.50882 * 109.35988 * 274.99198 * 13 12 11 15 15 H 1.08994 * 109.36493 * 331.69524 * 14 13 12 16 16 N 1.46500 * 109.36305 * 212.07976 * 14 13 12 17 17 C 1.34775 * 120.00283 * 155.00255 * 16 14 13 18 18 O 1.21607 * 119.99587 * 359.97438 * 17 16 14 19 19 C 1.47443 * 120.00629 * 179.97438 * 17 16 14 20 20 C 1.38862 * 120.45924 * 352.84632 * 19 17 16 21 21 C 1.38906 * 120.67659 * 179.76726 * 20 19 17 22 22 C 1.36372 * 121.27217 * 0.51584 * 21 20 19 23 23 C 1.40394 * 119.98135 * 359.74703 * 22 21 20 24 24 C 1.40473 * 121.94776 * 179.97438 * 23 22 21 25 25 N 1.31276 * 119.88201 * 180.02562 * 24 23 22 26 26 C 1.32546 * 122.73313 * 359.97438 * 25 24 23 27 27 C 1.36332 * 121.82524 * 359.97438 * 26 25 24 28 28 C 1.40293 * 118.69875 * 0.02562 * 27 26 25 29 29 C 1.47603 * 118.64647 * 150.15367 * 9 7 2 30 30 H 0.96999 * 119.99780 * 173.57765 * 1 2 3 31 31 H 1.09005 * 109.44778 * 30.74733 * 10 9 7 32 32 H 1.08995 * 109.44633 * 150.68835 * 10 9 7 33 33 H 1.09009 * 109.32678 * 48.99733 * 11 10 9 34 34 H 1.09003 * 109.32716 * 168.64078 * 11 10 9 35 35 H 1.09000 * 108.51165 * 184.05722 * 12 11 10 36 36 H 1.09000 * 108.50725 * 301.70426 * 12 11 10 37 37 H 1.09002 * 109.49134 * 34.96115 * 13 12 11 38 38 H 1.09002 * 109.49046 * 154.99904 * 13 12 11 39 39 H 0.97006 * 120.00441 * 334.99455 * 16 14 13 40 40 H 1.08005 * 119.66026 * 0.02693 * 20 19 17 41 41 H 1.07998 * 119.36301 * 180.28904 * 21 20 19 42 42 H 1.07998 * 120.00444 * 179.71907 * 22 21 20 43 43 H 1.08003 * 120.05986 * 0.04439 * 24 23 22 44 44 H 1.08003 * 119.08670 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.65252 * 179.97438 * 27 26 25 46 46 H 1.09000 * 108.94475 * 258.58186 * 29 9 7 47 47 H 1.09003 * 108.94184 * 17.20269 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9380 -1.2898 -0.5465 9 7 1.5188 -2.2768 0.6913 10 6 0.7209 -2.0346 1.8725 11 6 1.6424 -1.9539 3.1144 12 6 2.1727 -3.2856 3.4445 13 6 3.0536 -3.8980 2.3598 14 6 2.1837 -4.5987 1.3455 15 1 1.2691 -4.9416 1.8292 16 7 2.9046 -5.7523 0.8017 17 6 2.2203 -6.7958 0.2926 18 8 1.0043 -6.7800 0.2851 19 6 2.9457 -7.9567 -0.2552 20 6 4.3276 -7.9245 -0.3879 21 6 5.0161 -9.0174 -0.8990 22 6 4.3600 -10.1457 -1.2940 23 6 2.9625 -10.2200 -1.1827 24 6 2.2450 -11.3614 -1.5774 25 7 0.9381 -11.3869 -1.4559 26 6 0.2437 -10.3685 -0.9685 27 6 0.8478 -9.2176 -0.5573 28 6 2.2435 -9.1166 -0.6569 29 6 1.8204 -3.6345 0.1971 30 1 -0.4850 -0.8348 -0.0940 31 1 0.1810 -1.0944 1.7593 32 1 0.0081 -2.8490 2.0021 33 1 2.4711 -1.2772 2.9054 34 1 1.0724 -1.5748 3.9626 35 1 2.7566 -3.2080 4.3617 36 1 1.3334 -3.9571 3.6257 37 1 3.6244 -3.1107 1.8674 38 1 3.7387 -4.6163 2.8101 39 1 3.8746 -5.7652 0.8079 40 1 4.8731 -7.0423 -0.0868 41 1 6.0914 -8.9711 -0.9886 42 1 4.9154 -10.9818 -1.6927 43 1 2.7677 -12.2166 -1.9798 44 1 -0.8306 -10.4529 -0.8950 45 1 0.2633 -8.3993 -0.1634 46 1 0.9488 -4.0205 -0.3315 47 1 2.6583 -3.5800 -0.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034533606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:46 Heat of formation + Delta-G solvation = 25.934205 kcal Electronic energy + Delta-G solvation = -29253.697839 eV Core-core repulsion = 25401.054660 eV Total energy + Delta-G solvation = -3852.643180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14978 -40.86189 -39.41832 -38.16713 -36.50790 -35.13509 -33.94980 -33.03810 -32.41616 -31.60220 -30.41998 -27.81841 -26.25404 -25.72987 -25.09056 -24.42646 -23.92993 -22.05562 -21.36110 -21.01845 -19.25259 -19.11048 -18.86419 -17.68175 -17.28016 -17.22783 -16.74511 -16.43338 -16.04935 -15.90639 -15.64657 -15.54867 -15.28916 -15.05138 -14.81968 -14.56489 -14.33045 -14.17365 -14.01251 -13.57857 -13.43090 -13.07896 -12.96206 -12.85936 -12.66814 -12.57731 -12.42090 -12.11197 -11.90527 -11.82715 -11.62349 -11.43419 -11.28491 -11.21659 -11.04058 -10.57090 -10.35171 -10.20861 -10.12034 -9.15154 -8.90950 -8.24204 -5.41656 -0.91663 -0.16605 0.58257 1.58376 1.64847 1.66633 1.84630 1.94667 2.19469 2.66343 3.05790 3.11005 3.39982 3.46986 3.56637 3.62066 3.75063 3.78129 3.87200 3.89500 3.94543 4.12390 4.17798 4.23786 4.30753 4.36879 4.45784 4.52895 4.67005 4.69991 4.74691 4.82720 4.89123 4.92856 4.96277 5.02527 5.07334 5.21114 5.23743 5.24186 5.31784 5.34205 5.39562 5.50858 5.59663 5.65155 5.75810 5.90026 6.32610 6.43175 6.92596 7.06422 7.13502 7.80487 8.16534 8.88602 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.002627 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.055806 B =10655.622806 C =10784.689982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.067 4.067 3 Si 1.103 2.897 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.364 4.364 8 H 0.047 0.953 9 N -0.595 5.595 10 C 0.140 3.860 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.105 4.105 14 C 0.151 3.849 15 H 0.061 0.939 16 N -0.700 5.700 17 C 0.553 3.447 18 O -0.575 6.575 19 C -0.163 4.163 20 C -0.037 4.037 21 C -0.131 4.131 22 C -0.039 4.039 23 C -0.137 4.137 24 C 0.152 3.848 25 N -0.514 5.514 26 C 0.069 3.931 27 C -0.186 4.186 28 C -0.008 4.008 29 C 0.147 3.853 30 H 0.249 0.751 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.415 0.585 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.207 0.793 44 H 0.161 0.839 45 H 0.148 0.852 46 H -0.021 1.021 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.743 -22.026 2.116 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.265 4.265 3 Si 0.928 3.072 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.064 0.936 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.168 4.168 12 C -0.137 4.137 13 C -0.143 4.143 14 C 0.045 3.955 15 H 0.079 0.921 16 N -0.352 5.352 17 C 0.342 3.658 18 O -0.457 6.457 19 C -0.166 4.166 20 C -0.057 4.057 21 C -0.148 4.148 22 C -0.059 4.059 23 C -0.139 4.139 24 C -0.020 4.020 25 N -0.222 5.222 26 C -0.073 4.073 27 C -0.205 4.205 28 C -0.014 4.014 29 C 0.021 3.979 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.254 0.746 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.201 0.799 43 H 0.224 0.776 44 H 0.179 0.821 45 H 0.165 0.835 46 H -0.003 1.003 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.108 -21.049 1.988 25.417 hybrid contribution -0.172 -0.449 -0.167 0.509 sum 13.936 -21.498 1.822 25.684 Atomic orbital electron populations 1.70912 1.08214 1.28860 1.47760 1.27036 0.95886 1.04800 0.98768 0.83038 0.74261 0.72419 0.77513 1.22099 1.20284 1.20118 1.20045 1.03887 0.92669 1.32753 0.93555 1.43781 1.61351 1.00576 1.26103 1.20931 0.92654 0.98897 0.86221 1.21199 0.99961 0.98042 0.97609 1.20249 0.99048 0.96028 0.98424 1.21199 0.97867 0.99802 0.95391 1.21109 0.95638 0.84703 0.94070 0.92102 1.45902 1.10815 1.17070 1.61448 1.18603 0.86947 0.83025 0.77196 1.90616 1.15558 1.81030 1.58448 1.19741 0.95229 0.93911 1.07723 1.21953 0.91292 1.00034 0.92376 1.21340 1.02685 0.92059 0.98756 1.21733 0.90970 0.99554 0.93608 1.19338 0.96563 0.95109 1.02889 1.23951 0.89217 0.96594 0.92235 1.67477 1.10211 1.29829 1.14732 1.22473 1.01080 0.88745 0.95013 1.22783 0.95589 1.00692 1.01471 1.18203 0.93729 0.93545 0.95924 1.21552 0.96437 0.85360 0.94551 0.94137 0.93544 0.96336 0.93167 0.91880 0.90092 0.93257 0.91565 0.88681 0.74630 0.82506 0.80527 0.79930 0.77621 0.82128 0.83507 1.00301 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.42 12.06 21.65 0.26 -56.16 16 2 C -0.07 -3.77 4.57 84.86 0.39 -3.39 16 3 Si 1.10 50.30 30.04 68.60 2.06 52.36 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.36 -20.25 9.17 84.03 0.77 -19.48 16 8 H 0.05 2.59 7.97 -2.91 -0.02 2.57 16 9 N -0.60 -30.06 2.10 -697.69 -1.46 -31.52 16 10 C 0.14 6.71 4.99 87.37 0.44 7.15 16 11 C -0.13 -4.90 5.74 29.39 0.17 -4.74 16 12 C -0.10 -3.04 5.16 28.61 0.15 -2.89 16 13 C -0.10 -3.05 5.06 29.76 0.15 -2.90 16 14 C 0.15 5.19 2.27 44.74 0.10 5.29 16 15 H 0.06 2.39 6.74 -2.39 -0.02 2.37 16 16 N -0.70 -19.07 4.93 -446.99 -2.20 -21.28 16 17 C 0.55 17.39 7.68 86.67 0.67 18.06 16 18 O -0.58 -23.25 13.17 -4.05 -0.05 -23.30 16 19 C -0.16 -4.01 5.90 -19.92 -0.12 -4.12 16 20 C -0.04 -0.54 9.51 22.58 0.21 -0.33 16 21 C -0.13 -1.17 9.92 21.99 0.22 -0.95 16 22 C -0.04 -0.37 9.79 22.36 0.22 -0.16 16 23 C -0.14 -2.51 5.74 -21.33 -0.12 -2.63 16 24 C 0.15 2.61 11.05 85.32 0.94 3.55 16 25 N -0.51 -12.26 10.30 -195.39 -2.01 -14.27 16 26 C 0.07 1.81 11.07 84.14 0.93 2.75 16 27 C -0.19 -5.58 9.27 22.33 0.21 -5.37 16 28 C -0.01 -0.21 5.77 -21.11 -0.12 -0.34 16 29 C 0.15 6.61 5.86 86.61 0.51 7.11 16 30 H 0.25 16.01 7.71 -92.71 -0.72 15.30 16 31 H 0.05 2.58 5.19 -2.38 -0.01 2.57 16 32 H 0.02 0.87 8.06 -2.39 -0.02 0.86 16 33 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.52 7.35 -2.39 -0.02 1.50 16 37 H 0.07 2.21 7.49 -2.39 -0.02 2.19 16 38 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 39 H 0.41 7.78 6.63 -92.70 -0.61 7.17 16 40 H 0.16 1.43 6.45 -2.91 -0.02 1.41 16 41 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.15 5.20 5.07 -2.91 -0.01 5.18 16 46 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 47 H 0.05 2.10 7.83 -2.39 -0.02 2.08 16 Total: -1.00 -79.80 371.67 2.74 -77.06 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.44 Total: 20.49 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.71 Total: -3.38 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.42 Total: -123.23 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.06 Total: 52.36 kcal Total: -79.80 2.74 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034533606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.999 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds