Wall clock time and date at job start Tue Mar 31 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47534 * 84.78317 * 3 2 1 5 5 H 1.48508 * 109.47366 * 204.78313 * 3 2 1 6 6 H 1.48502 * 109.47268 * 324.78059 * 3 2 1 7 7 C 1.38815 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 18.38698 * 7 2 1 9 9 N 1.36928 * 120.00415 * 198.38624 * 7 2 1 10 10 C 1.43435 * 120.54028 * 215.22781 * 9 7 2 11 11 C 1.54408 * 116.38759 * 271.72778 * 10 9 7 12 12 C 1.54842 * 110.07070 * 318.64981 * 11 10 9 13 13 C 1.50123 * 110.81483 * 321.07339 * 12 11 10 14 14 C 1.52529 * 105.41402 * 97.68218 * 13 12 11 15 15 H 1.09000 * 108.52458 * 31.83965 * 14 13 12 16 16 N 1.46501 * 108.39949 * 149.43748 * 14 13 12 17 17 C 1.34778 * 120.00043 * 209.64064 * 16 14 13 18 18 O 1.21595 * 120.00125 * 0.02562 * 17 16 14 19 19 C 1.47452 * 119.99649 * 180.02562 * 17 16 14 20 20 C 1.38856 * 120.46877 * 354.58737 * 19 17 16 21 21 C 1.38894 * 120.68095 * 180.02562 * 20 19 17 22 22 C 1.36374 * 121.27167 * 359.97438 * 21 20 19 23 23 C 1.40391 * 119.98820 * 0.02562 * 22 21 20 24 24 C 1.40465 * 121.95884 * 180.02562 * 23 22 21 25 25 N 1.31284 * 119.88069 * 179.19950 * 24 23 22 26 26 C 1.32548 * 122.73449 * 0.78854 * 25 24 23 27 27 C 1.36336 * 121.81872 * 359.46638 * 26 25 24 28 28 C 1.40293 * 118.69966 * 359.97438 * 27 26 25 29 29 C 1.46235 * 114.27999 * 270.59129 * 14 13 12 30 30 H 0.97000 * 120.00004 * 0.02562 * 1 2 3 31 31 H 1.08997 * 108.16001 * 33.29852 * 10 9 7 32 32 H 1.08994 * 108.16620 * 149.87279 * 10 9 7 33 33 H 1.08995 * 109.44742 * 198.43150 * 11 10 9 34 34 H 1.09003 * 109.23695 * 78.73260 * 11 10 9 35 35 H 1.08995 * 109.20918 * 200.72689 * 12 11 10 36 36 H 1.09003 * 109.20671 * 81.41626 * 12 11 10 37 37 H 1.09001 * 110.25308 * 338.71261 * 13 12 11 38 38 H 1.08997 * 110.37064 * 216.71662 * 13 12 11 39 39 H 0.97004 * 119.99829 * 29.65052 * 16 14 13 40 40 H 1.08007 * 119.66077 * 0.02562 * 20 19 17 41 41 H 1.07995 * 119.36451 * 179.97438 * 21 20 19 42 42 H 1.08004 * 120.00473 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.05853 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.09439 * 179.43894 * 26 25 24 45 45 H 1.07993 * 120.64705 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.84347 * 298.90516 * 29 14 13 47 47 H 1.09000 * 109.90439 * 177.94865 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3875 2.1101 1.3943 5 1 3.5986 1.4109 -0.5869 6 1 1.5071 2.6183 -0.8074 7 6 2.0103 -1.2021 0.0005 8 1 1.5116 -2.1137 -0.2941 9 7 3.3272 -1.2323 0.3746 10 6 4.2451 -2.1326 -0.2613 11 6 4.3625 -3.5427 0.3567 12 6 4.3679 -3.4468 1.9021 13 6 5.1617 -2.2577 2.3600 14 6 4.1342 -1.1617 2.6241 15 1 3.2099 -1.6284 2.9647 16 7 4.6414 -0.3009 3.6955 17 6 3.7799 0.3289 4.5188 18 8 2.5817 0.1822 4.3725 19 6 4.2904 1.1957 5.5968 20 6 5.6540 1.2827 5.8441 21 6 6.1396 2.0975 6.8588 22 6 5.2981 2.8339 7.6393 23 6 3.9118 2.7766 7.4247 24 6 3.0077 3.5177 8.2034 25 7 1.7202 3.4456 7.9570 26 6 1.2155 2.6808 6.9993 27 6 2.0097 1.9203 6.1933 28 6 3.3984 1.9545 6.3897 29 6 3.8326 -0.3276 1.4615 30 1 -0.4850 0.8400 -0.0004 31 1 3.9423 -2.2473 -1.3021 32 1 5.2339 -1.6742 -0.2494 33 1 5.2878 -4.0103 0.0204 34 1 3.5145 -4.1475 0.0352 35 1 4.8090 -4.3535 2.3161 36 1 3.3423 -3.3525 2.2591 37 1 5.8556 -1.9442 1.5801 38 1 5.7050 -2.4938 3.2750 39 1 5.5972 -0.1840 3.8123 40 1 6.3441 0.7109 5.2413 41 1 7.2042 2.1488 7.0329 42 1 5.6980 3.4610 8.4225 43 1 3.3720 4.1555 8.9953 44 1 0.1456 2.6592 6.8536 45 1 1.5781 1.3036 5.4189 46 1 4.7361 0.1828 1.1278 47 1 3.0675 0.4049 1.7188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034533607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:52 Heat of formation + Delta-G solvation = 59.414371 kcal Electronic energy + Delta-G solvation = -29904.407376 eV Core-core repulsion = 26053.216005 eV Total energy + Delta-G solvation = -3851.191371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17125 -39.75565 -38.03926 -37.21727 -34.65309 -33.44698 -32.98600 -31.57847 -31.24707 -30.60852 -29.36085 -26.40876 -24.96826 -24.67197 -23.83485 -23.48460 -22.44423 -20.68862 -20.54811 -19.08750 -18.17604 -17.93175 -16.76992 -16.63324 -16.32157 -15.95326 -15.53604 -15.21271 -14.88046 -14.60864 -14.34153 -14.22038 -13.97059 -13.89568 -13.46855 -13.29526 -12.96136 -12.70795 -12.68419 -12.23836 -12.18788 -12.13990 -11.85664 -11.74313 -11.67752 -11.12992 -10.79304 -10.58684 -10.40285 -10.25380 -10.19988 -9.90989 -9.83516 -9.74450 -9.47658 -9.32291 -9.20936 -8.87005 -8.55167 -8.21478 -6.88197 -5.94162 -3.37511 -0.03066 0.70834 1.58750 2.59663 3.18657 3.33196 3.37664 3.48384 3.51760 4.01000 4.32712 4.36994 4.42621 4.52570 4.56470 4.71745 4.78122 4.87408 4.98469 5.03178 5.24203 5.26502 5.38651 5.42999 5.46335 5.52822 5.72007 5.79377 5.79578 5.84035 5.86333 5.88855 5.98325 6.05997 6.08638 6.23419 6.27303 6.45239 6.47601 6.52505 6.56965 6.64626 6.70096 6.75924 6.76265 6.87350 6.91886 7.64498 7.88733 8.03752 8.39477 8.43155 8.96114 9.73227 10.13939 11.21327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003963 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.908914 B = 7063.317086 C = 8376.755287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.039 3.961 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.302 1.302 7 C -0.269 4.269 8 H 0.082 0.918 9 N -0.592 5.592 10 C 0.156 3.844 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.119 4.119 14 C 0.130 3.870 15 H 0.096 0.904 16 N -0.724 5.724 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.118 4.118 20 C -0.063 4.063 21 C -0.131 4.131 22 C -0.064 4.064 23 C -0.120 4.120 24 C 0.134 3.866 25 N -0.485 5.485 26 C 0.071 3.929 27 C -0.148 4.148 28 C 0.009 3.991 29 C 0.111 3.889 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.179 0.821 46 H 0.034 0.966 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 2.356 14.681 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.161 4.161 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.195 1.195 6 H -0.230 1.230 7 C -0.398 4.398 8 H 0.100 0.900 9 N -0.314 5.314 10 C 0.028 3.972 11 C -0.185 4.185 12 C -0.147 4.147 13 C -0.157 4.157 14 C 0.026 3.974 15 H 0.114 0.886 16 N -0.376 5.376 17 C 0.337 3.663 18 O -0.392 6.392 19 C -0.122 4.122 20 C -0.084 4.084 21 C -0.149 4.149 22 C -0.084 4.084 23 C -0.122 4.122 24 C -0.037 4.037 25 N -0.193 5.193 26 C -0.072 4.072 27 C -0.167 4.167 28 C 0.003 3.997 29 C -0.014 4.014 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.180 0.820 44 H 0.174 0.826 45 H 0.196 0.804 46 H 0.052 0.948 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.367 2.762 14.908 20.887 hybrid contribution 1.507 0.530 -0.355 1.637 sum 15.874 3.292 14.553 21.786 Atomic orbital electron populations 1.69823 1.05866 1.26649 1.51739 1.25358 0.95059 0.97650 0.98050 0.86885 0.80346 0.84826 0.76926 1.21459 1.19477 1.23031 1.18765 0.84394 0.94182 1.42428 0.90049 1.44079 1.07514 1.42284 1.37529 1.20282 0.92293 0.89174 0.95502 1.22797 1.00189 1.00450 0.95041 1.21311 1.00573 0.96082 0.96720 1.21316 0.97652 0.95898 1.00801 1.21077 0.98160 0.90988 0.87128 0.88604 1.46471 1.09277 1.49002 1.32839 1.18078 0.86640 0.80137 0.81480 1.90690 1.14766 1.62132 1.71659 1.20040 0.93656 1.00179 0.98282 1.21476 0.94019 0.96497 0.96359 1.20806 1.00442 0.97516 0.96100 1.21145 0.91622 0.97292 0.98325 1.19023 0.95229 0.99972 0.97955 1.23145 0.88178 0.95547 0.96880 1.67397 1.15256 1.18695 1.17969 1.22391 1.00920 0.92615 0.91238 1.23079 0.92931 0.99510 1.01174 1.17971 0.93930 0.94285 0.93500 1.21118 0.98281 0.93890 0.88080 0.92710 0.93345 0.95429 0.92952 0.92458 0.93474 0.91231 0.90926 0.91890 0.77359 0.85062 0.84920 0.84616 0.82039 0.82644 0.80392 0.94777 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.97 55.49 0.78 -27.40 16 2 C 0.04 1.17 5.30 -17.43 -0.09 1.07 16 3 Si 0.88 23.16 24.68 -169.99 -4.20 18.97 16 4 H -0.29 -7.63 6.69 56.52 0.38 -7.26 16 5 H -0.27 -6.83 7.05 56.52 0.40 -6.43 16 6 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 7 C -0.27 -7.56 9.98 -15.06 -0.15 -7.71 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 N -0.59 -13.78 2.22 -175.40 -0.39 -14.17 16 10 C 0.16 2.98 5.13 -4.93 -0.03 2.96 16 11 C -0.14 -2.32 6.40 -25.02 -0.16 -2.48 16 12 C -0.11 -1.68 5.65 -27.19 -0.15 -1.83 16 13 C -0.12 -1.68 5.25 -28.40 -0.15 -1.82 16 14 C 0.13 2.32 2.01 -71.39 -0.14 2.18 16 15 H 0.10 2.06 6.23 -51.93 -0.32 1.73 16 16 N -0.72 -10.77 4.82 -58.29 -0.28 -11.05 16 17 C 0.55 9.43 7.65 -12.51 -0.10 9.34 16 18 O -0.52 -11.10 13.03 5.28 0.07 -11.03 16 19 C -0.12 -1.67 5.90 -104.70 -0.62 -2.29 16 20 C -0.06 -0.63 9.52 -39.11 -0.37 -1.00 16 21 C -0.13 -1.04 9.92 -40.01 -0.40 -1.44 16 22 C -0.06 -0.54 9.79 -39.44 -0.39 -0.93 16 23 C -0.12 -1.42 5.74 -106.88 -0.61 -2.03 16 24 C 0.13 1.52 11.05 -16.95 -0.19 1.34 16 25 N -0.49 -6.74 10.30 -13.11 -0.14 -6.88 16 26 C 0.07 1.04 11.07 -17.93 -0.20 0.84 16 27 C -0.15 -2.40 9.28 -39.49 -0.37 -2.77 16 28 C 0.01 0.13 5.77 -106.55 -0.61 -0.48 16 29 C 0.11 2.39 3.43 -5.20 -0.02 2.37 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.05 0.96 8.00 -51.93 -0.42 0.55 16 32 H 0.03 0.48 6.89 -51.93 -0.36 0.12 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.27 6.83 -51.93 -0.35 0.92 16 37 H 0.07 0.98 6.28 -51.93 -0.33 0.66 16 38 H 0.06 0.73 8.03 -51.93 -0.42 0.31 16 39 H 0.39 4.21 6.68 -40.82 -0.27 3.94 16 40 H 0.13 0.92 6.42 -52.48 -0.34 0.59 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 45 H 0.18 3.32 5.06 -52.49 -0.27 3.06 16 46 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 47 H 0.08 2.00 4.07 -51.93 -0.21 1.78 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -35.15 364.31 -9.65 -44.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.25 Total: 5.96 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.74 Total: -4.69 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.03 Total: -59.50 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.20 Total: 18.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.15 -9.65 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034533607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.220 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds