Wall clock time and date at job start Tue Mar 31 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47534 * 84.78317 * 3 2 1 5 5 H 1.48508 * 109.47366 * 204.78313 * 3 2 1 6 6 H 1.48502 * 109.47268 * 324.78059 * 3 2 1 7 7 C 1.38815 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 18.38698 * 7 2 1 9 9 N 1.36928 * 120.00415 * 198.38624 * 7 2 1 10 10 C 1.43435 * 120.54028 * 215.22781 * 9 7 2 11 11 C 1.54408 * 116.38759 * 271.72778 * 10 9 7 12 12 C 1.54842 * 110.07070 * 318.64981 * 11 10 9 13 13 C 1.50123 * 110.81483 * 321.07339 * 12 11 10 14 14 C 1.52529 * 105.41402 * 97.68218 * 13 12 11 15 15 H 1.09000 * 108.52458 * 31.83965 * 14 13 12 16 16 N 1.46501 * 108.39949 * 149.43748 * 14 13 12 17 17 C 1.34778 * 120.00043 * 209.64064 * 16 14 13 18 18 O 1.21595 * 120.00125 * 0.02562 * 17 16 14 19 19 C 1.47452 * 119.99649 * 180.02562 * 17 16 14 20 20 C 1.38856 * 120.46877 * 354.58737 * 19 17 16 21 21 C 1.38894 * 120.68095 * 180.02562 * 20 19 17 22 22 C 1.36374 * 121.27167 * 359.97438 * 21 20 19 23 23 C 1.40391 * 119.98820 * 0.02562 * 22 21 20 24 24 C 1.40465 * 121.95884 * 180.02562 * 23 22 21 25 25 N 1.31284 * 119.88069 * 179.19950 * 24 23 22 26 26 C 1.32548 * 122.73449 * 0.78854 * 25 24 23 27 27 C 1.36336 * 121.81872 * 359.46638 * 26 25 24 28 28 C 1.40293 * 118.69966 * 359.97438 * 27 26 25 29 29 C 1.46235 * 114.27999 * 270.59129 * 14 13 12 30 30 H 0.97000 * 120.00004 * 0.02562 * 1 2 3 31 31 H 1.08997 * 108.16001 * 33.29852 * 10 9 7 32 32 H 1.08994 * 108.16620 * 149.87279 * 10 9 7 33 33 H 1.08995 * 109.44742 * 198.43150 * 11 10 9 34 34 H 1.09003 * 109.23695 * 78.73260 * 11 10 9 35 35 H 1.08995 * 109.20918 * 200.72689 * 12 11 10 36 36 H 1.09003 * 109.20671 * 81.41626 * 12 11 10 37 37 H 1.09001 * 110.25308 * 338.71261 * 13 12 11 38 38 H 1.08997 * 110.37064 * 216.71662 * 13 12 11 39 39 H 0.97004 * 119.99829 * 29.65052 * 16 14 13 40 40 H 1.08007 * 119.66077 * 0.02562 * 20 19 17 41 41 H 1.07995 * 119.36451 * 179.97438 * 21 20 19 42 42 H 1.08004 * 120.00473 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.05853 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.09439 * 179.43894 * 26 25 24 45 45 H 1.07993 * 120.64705 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.84347 * 298.90516 * 29 14 13 47 47 H 1.09000 * 109.90439 * 177.94865 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3875 2.1101 1.3943 5 1 3.5986 1.4109 -0.5869 6 1 1.5071 2.6183 -0.8074 7 6 2.0103 -1.2021 0.0005 8 1 1.5116 -2.1137 -0.2941 9 7 3.3272 -1.2323 0.3746 10 6 4.2451 -2.1326 -0.2613 11 6 4.3625 -3.5427 0.3567 12 6 4.3679 -3.4468 1.9021 13 6 5.1617 -2.2577 2.3600 14 6 4.1342 -1.1617 2.6241 15 1 3.2099 -1.6284 2.9647 16 7 4.6414 -0.3009 3.6955 17 6 3.7799 0.3289 4.5188 18 8 2.5817 0.1822 4.3725 19 6 4.2904 1.1957 5.5968 20 6 5.6540 1.2827 5.8441 21 6 6.1396 2.0975 6.8588 22 6 5.2981 2.8339 7.6393 23 6 3.9118 2.7766 7.4247 24 6 3.0077 3.5177 8.2034 25 7 1.7202 3.4456 7.9570 26 6 1.2155 2.6808 6.9993 27 6 2.0097 1.9203 6.1933 28 6 3.3984 1.9545 6.3897 29 6 3.8326 -0.3276 1.4615 30 1 -0.4850 0.8400 -0.0004 31 1 3.9423 -2.2473 -1.3021 32 1 5.2339 -1.6742 -0.2494 33 1 5.2878 -4.0103 0.0204 34 1 3.5145 -4.1475 0.0352 35 1 4.8090 -4.3535 2.3161 36 1 3.3423 -3.3525 2.2591 37 1 5.8556 -1.9442 1.5801 38 1 5.7050 -2.4938 3.2750 39 1 5.5972 -0.1840 3.8123 40 1 6.3441 0.7109 5.2413 41 1 7.2042 2.1488 7.0329 42 1 5.6980 3.4610 8.4225 43 1 3.3720 4.1555 8.9953 44 1 0.1456 2.6592 6.8536 45 1 1.5781 1.3036 5.4189 46 1 4.7361 0.1828 1.1278 47 1 3.0675 0.4049 1.7188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034533607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:51 Heat of formation + Delta-G solvation = 34.121681 kcal Electronic energy + Delta-G solvation = -29905.504150 eV Core-core repulsion = 26053.216005 eV Total energy + Delta-G solvation = -3852.288144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17840 -41.03473 -39.43817 -38.16159 -36.21420 -35.08866 -33.95126 -33.29521 -32.64484 -31.69933 -30.42665 -28.21493 -26.34594 -25.81144 -25.07774 -24.42660 -23.86606 -22.20180 -21.79212 -20.55523 -19.12394 -18.94423 -18.73199 -17.81433 -17.48195 -17.26103 -17.02539 -16.36610 -16.18360 -15.89741 -15.72039 -15.59307 -15.21669 -15.01533 -14.84512 -14.62357 -14.59436 -14.23426 -13.66398 -13.60122 -13.54097 -13.37164 -13.07684 -12.96805 -12.86496 -12.74805 -12.59847 -12.24087 -11.89958 -11.84112 -11.62598 -11.31462 -11.22736 -11.15064 -10.99130 -10.79615 -10.37615 -10.27687 -10.14431 -9.16200 -8.84853 -8.25255 -5.62531 -0.91140 -0.17374 0.58117 1.22233 1.26090 1.38248 1.69121 1.98524 2.21951 2.35150 2.97326 3.05334 3.34087 3.43820 3.56155 3.60307 3.67473 3.75681 3.87108 3.91242 4.04681 4.12863 4.19247 4.34279 4.36131 4.38106 4.47443 4.54204 4.57549 4.69501 4.78436 4.80700 4.85658 4.88682 5.00252 5.06129 5.11767 5.18992 5.24004 5.25596 5.32889 5.35282 5.43067 5.48813 5.57869 5.65398 5.76833 5.87531 6.13289 6.49866 6.90018 6.91579 7.21973 7.56847 8.02854 8.94651 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003963 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.908914 B = 7063.317086 C = 8376.755287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.024 4.024 3 Si 0.947 3.053 4 H -0.301 1.301 5 H -0.242 1.242 6 H -0.308 1.308 7 C -0.249 4.249 8 H 0.044 0.956 9 N -0.605 5.605 10 C 0.144 3.856 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.104 4.104 14 C 0.140 3.860 15 H 0.045 0.955 16 N -0.707 5.707 17 C 0.542 3.458 18 O -0.578 6.578 19 C -0.166 4.166 20 C -0.032 4.032 21 C -0.128 4.128 22 C -0.039 4.039 23 C -0.136 4.136 24 C 0.152 3.848 25 N -0.513 5.513 26 C 0.067 3.933 27 C -0.192 4.192 28 C -0.010 4.010 29 C 0.113 3.887 30 H 0.259 0.741 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.024 0.976 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.186 0.814 43 H 0.211 0.789 44 H 0.155 0.845 45 H 0.138 0.862 46 H 0.062 0.938 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.567 3.407 17.094 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.219 4.219 3 Si 0.777 3.223 4 H -0.230 1.230 5 H -0.165 1.165 6 H -0.237 1.237 7 C -0.379 4.379 8 H 0.062 0.938 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.176 4.176 12 C -0.146 4.146 13 C -0.141 4.141 14 C 0.035 3.965 15 H 0.063 0.937 16 N -0.361 5.361 17 C 0.331 3.669 18 O -0.459 6.459 19 C -0.170 4.170 20 C -0.052 4.052 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.138 4.138 24 C -0.020 4.020 25 N -0.222 5.222 26 C -0.075 4.075 27 C -0.211 4.211 28 C -0.016 4.016 29 C -0.012 4.012 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.256 0.744 40 H 0.183 0.817 41 H 0.201 0.799 42 H 0.203 0.797 43 H 0.228 0.772 44 H 0.173 0.827 45 H 0.155 0.845 46 H 0.081 0.919 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.888 3.783 17.312 28.162 hybrid contribution -0.665 0.145 -0.976 1.190 sum 21.223 3.929 16.335 27.069 Atomic orbital electron populations 1.69965 1.07615 1.27020 1.55182 1.26009 0.95669 1.01100 0.99169 0.85806 0.80127 0.80564 0.75844 1.22998 1.16534 1.23709 1.18674 0.86623 0.92529 1.40036 0.93829 1.44159 1.06267 1.43514 1.38908 1.20559 0.92667 0.90289 0.94686 1.22717 1.01433 0.98047 0.95432 1.21295 0.98683 0.98472 0.96185 1.21306 0.96484 0.93050 1.03271 1.20645 0.98079 0.91562 0.86214 0.93697 1.46145 1.10318 1.48074 1.31528 1.18770 0.86030 0.79930 0.82151 1.90695 1.17649 1.64167 1.73419 1.19830 0.95691 1.02321 0.99112 1.21983 0.92116 0.95116 0.96003 1.21389 1.02844 0.95828 0.94448 1.21756 0.89469 0.96252 0.98416 1.19351 0.97437 0.99773 0.97266 1.24019 0.87188 0.94214 0.96560 1.67474 1.17014 1.19485 1.18185 1.22382 1.01008 0.92632 0.91465 1.22786 0.94952 1.01396 1.01983 1.18234 0.93164 0.95334 0.94878 1.21083 0.97588 0.93425 0.89060 0.93208 0.94788 0.91831 0.88601 0.94729 0.90151 0.95712 0.88656 0.88102 0.74433 0.81685 0.79927 0.79677 0.77218 0.82722 0.84456 0.91948 0.94751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.50 13.97 21.65 0.30 -64.20 16 2 C -0.02 -1.50 5.30 84.86 0.45 -1.05 16 3 Si 0.95 50.86 24.68 68.60 1.69 52.55 16 4 H -0.30 -16.76 6.69 99.48 0.67 -16.10 16 5 H -0.24 -11.70 7.05 99.48 0.70 -11.00 16 6 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 7 C -0.25 -14.85 9.98 84.04 0.84 -14.01 16 8 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 9 N -0.60 -28.70 2.22 -708.85 -1.57 -30.27 16 10 C 0.14 5.31 5.13 87.42 0.45 5.76 16 11 C -0.14 -4.10 6.40 31.70 0.20 -3.90 16 12 C -0.11 -3.14 5.65 30.30 0.17 -2.97 16 13 C -0.10 -2.55 5.25 29.51 0.15 -2.39 16 14 C 0.14 4.99 2.01 42.75 0.09 5.07 16 15 H 0.04 2.08 6.23 -2.39 -0.01 2.07 16 16 N -0.71 -20.33 4.82 -456.58 -2.20 -22.54 16 17 C 0.54 19.53 7.65 86.67 0.66 20.19 16 18 O -0.58 -28.04 13.03 -4.02 -0.05 -28.09 16 19 C -0.17 -4.62 5.90 -19.92 -0.12 -4.74 16 20 C -0.03 -0.49 9.52 22.58 0.21 -0.28 16 21 C -0.13 -1.16 9.92 21.99 0.22 -0.94 16 22 C -0.04 -0.42 9.79 22.36 0.22 -0.20 16 23 C -0.14 -2.87 5.74 -21.33 -0.12 -3.00 16 24 C 0.15 3.07 11.05 85.32 0.94 4.01 16 25 N -0.51 -14.42 10.30 -195.40 -2.01 -16.43 16 26 C 0.07 2.17 11.07 84.14 0.93 3.10 16 27 C -0.19 -7.05 9.28 22.33 0.21 -6.84 16 28 C -0.01 -0.31 5.77 -21.11 -0.12 -0.44 16 29 C 0.11 4.86 3.43 83.58 0.29 5.15 16 30 H 0.26 16.82 8.31 -92.71 -0.77 16.05 16 31 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 32 H 0.06 1.91 6.89 -2.39 -0.02 1.90 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.02 0.93 6.83 -2.39 -0.02 0.92 16 37 H 0.10 2.00 6.28 -2.39 -0.01 1.98 16 38 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 39 H 0.42 7.32 6.68 -92.71 -0.62 6.71 16 40 H 0.17 1.27 6.42 -2.91 -0.02 1.25 16 41 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.19 0.23 8.06 -2.91 -0.02 0.20 16 43 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 45 H 0.14 6.15 5.06 -2.91 -0.01 6.14 16 46 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 47 H 0.03 1.81 4.07 -2.39 -0.01 1.80 16 Total: -1.00 -92.76 364.31 2.17 -90.58 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.34 Total: 15.86 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.67 Total: 2.53 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -5.48 Total: -133.43 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.69 Total: 52.55 kcal Total: -92.76 2.17 -90.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034533607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.705 kcal (2) G-P(sol) polarization free energy of solvation -92.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds