Wall clock time and date at job start Tue Mar 31 2020 22:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48509 * 109.47236 * 240.00098 * 3 2 1 5 5 H 1.48497 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47223 * 120.00154 * 3 2 1 7 7 C 1.38815 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00141 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46739 * 325.00328 * 10 9 7 12 12 C 1.53001 * 109.46920 * 85.00160 * 10 9 7 13 13 C 1.53002 * 109.46806 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47159 * 300.00117 * 13 12 10 15 15 H 1.09006 * 109.46681 * 300.00296 * 14 13 12 16 16 N 1.46500 * 109.47181 * 180.02562 * 14 13 12 17 17 C 1.34779 * 120.00112 * 154.99580 * 16 14 13 18 18 O 1.21547 * 119.99567 * 0.02562 * 17 16 14 19 19 C 1.47896 * 120.00000 * 180.02562 * 17 16 14 20 20 C 1.38888 * 121.11386 * 354.14885 * 19 17 16 21 21 C 1.39279 * 119.58241 * 180.02562 * 20 19 17 22 22 N 1.30992 * 121.87740 * 0.02562 * 21 20 19 23 23 C 1.33533 * 121.83284 * 359.97438 * 22 21 20 24 24 C 1.40716 * 120.96982 * 179.97438 * 23 22 21 25 25 C 1.36067 * 119.73705 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.05439 * 0.02562 * 25 24 23 27 27 C 1.36243 * 120.84161 * 359.97438 * 26 25 24 28 28 C 1.40105 * 119.64526 * 359.72076 * 27 26 25 29 29 C 1.53001 * 109.47357 * 60.00220 * 14 13 12 30 30 C 1.53000 * 109.47181 * 205.00361 * 10 9 7 31 31 H 0.96997 * 120.00300 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99753 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.46974 * 60.00503 * 12 10 9 34 34 H 1.08994 * 109.47241 * 299.99948 * 12 10 9 35 35 H 1.08994 * 109.46878 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.47130 * 59.99703 * 13 12 10 37 37 H 0.96996 * 120.00106 * 335.00172 * 16 14 13 38 38 H 1.08004 * 120.20934 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.05641 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.13259 * 0.03615 * 24 23 22 41 41 H 1.08002 * 119.46636 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.57657 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.17867 * 180.02562 * 27 26 25 44 44 H 1.08996 * 109.46974 * 59.99590 * 29 14 13 45 45 H 1.08994 * 109.47241 * 180.02562 * 29 14 13 46 46 H 1.08999 * 109.47068 * 59.99625 * 30 10 9 47 47 H 1.09006 * 109.46681 * 300.00143 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5505 -0.5900 12 6 2.4219 -4.0356 1.4365 13 6 3.1875 -5.3603 1.4364 14 6 2.3108 -6.4560 0.8265 15 1 1.4001 -6.5626 1.4159 16 7 3.0436 -7.7245 0.8270 17 6 2.3701 -8.8919 0.8269 18 8 1.1546 -8.8921 0.8259 19 6 3.1099 -10.1725 0.8279 20 6 4.4932 -10.2023 0.7078 21 6 5.1576 -11.4265 0.7120 22 7 4.5147 -12.5620 0.8262 23 6 3.1855 -12.6100 0.9455 24 6 2.5133 -13.8403 1.0665 25 6 1.1581 -13.8600 1.1861 26 6 0.4196 -12.6783 1.1906 27 6 1.0362 -11.4689 1.0755 28 6 2.4311 -11.4107 0.9569 29 6 1.9470 -6.0772 -0.6105 30 6 1.1810 -4.7522 -0.6102 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.5112 -4.1419 2.0258 34 1 3.0468 -3.2553 1.8708 35 1 3.4463 -5.6304 2.4602 36 1 4.0982 -5.2536 0.8471 37 1 4.0136 -7.7243 0.8275 38 1 5.0503 -9.2820 0.6117 39 1 6.2334 -11.4397 0.6185 40 1 3.0709 -14.7653 1.0645 41 1 0.6466 -14.8067 1.2783 42 1 -0.6553 -12.7218 1.2865 43 1 0.4534 -10.5596 1.0806 44 1 2.8578 -5.9704 -1.1998 45 1 1.3221 -6.8575 -1.0449 46 1 0.9217 -4.4822 -1.6340 47 1 0.2702 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034687040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:51 Heat of formation + Delta-G solvation = 24.230158 kcal Electronic energy + Delta-G solvation = -28210.802064 eV Core-core repulsion = 24358.084991 eV Total energy + Delta-G solvation = -3852.717073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46098 -39.87219 -38.03322 -37.44680 -35.03718 -33.89162 -33.04477 -30.99904 -30.82354 -30.46242 -30.10812 -27.52018 -25.36097 -23.95294 -23.73836 -22.91447 -22.39086 -21.23731 -20.79229 -19.59387 -18.47721 -17.91693 -17.68937 -17.05159 -16.26636 -15.89719 -15.42911 -15.23669 -15.08180 -14.82753 -14.51147 -14.25278 -14.06259 -13.81978 -13.61463 -13.54500 -13.48711 -12.89674 -12.66564 -12.26864 -12.14304 -11.97782 -11.85783 -11.72392 -11.47560 -10.92797 -10.89197 -10.81251 -10.79094 -10.75468 -10.51158 -10.32239 -10.20363 -9.76370 -9.66394 -9.51274 -9.17769 -9.17226 -8.87718 -8.59617 -6.96230 -5.76720 -3.05580 -0.26992 0.41433 1.38890 2.44175 2.77089 2.83939 3.42719 3.47195 3.48437 3.78057 3.85785 4.13995 4.23293 4.35150 4.48255 4.58061 4.72955 4.80898 4.88068 4.97063 4.98039 5.15394 5.22644 5.23215 5.38693 5.49786 5.51311 5.59042 5.65334 5.68109 5.74081 5.79744 5.83077 5.97054 5.98445 6.11420 6.14861 6.22382 6.25467 6.28373 6.39215 6.51660 6.54241 6.57479 6.66314 6.94571 7.08713 7.21909 7.45806 7.68417 7.90438 8.41972 9.52775 10.11534 10.45929 11.45858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029309 B = 0.001967 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.106070 B =14232.438092 C =14913.662153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.144 3.856 15 H 0.091 0.909 16 N -0.713 5.713 17 C 0.559 3.441 18 O -0.523 6.523 19 C -0.068 4.068 20 C -0.140 4.140 21 C 0.125 3.875 22 N -0.459 5.459 23 C 0.123 3.877 24 C -0.100 4.100 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.100 4.100 28 C -0.066 4.066 29 C -0.121 4.121 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.170 0.830 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -27.667 2.520 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.161 4.161 14 C 0.041 3.959 15 H 0.109 0.891 16 N -0.363 5.363 17 C 0.345 3.655 18 O -0.400 6.400 19 C -0.079 4.079 20 C -0.161 4.161 21 C -0.047 4.047 22 N -0.168 5.168 23 C 0.002 3.998 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.069 4.069 29 C -0.160 4.160 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.187 0.813 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.918 -28.314 2.516 29.508 hybrid contribution 0.350 1.722 0.036 1.757 sum 8.268 -26.593 2.552 27.965 Atomic orbital electron populations 1.69649 1.05093 1.25752 1.57607 1.24750 0.95512 0.97685 1.03096 0.86286 0.78523 0.83673 0.77794 1.21309 1.21723 1.21321 1.19189 0.90910 0.84164 1.42746 0.91282 1.42428 1.05821 0.99761 1.88527 1.20239 0.94410 0.86088 0.92567 0.93592 1.22232 0.99735 0.94019 1.01282 1.21826 0.98701 0.95431 1.00124 1.21225 0.95971 0.80940 0.97744 0.89075 1.46114 1.10389 1.05793 1.73968 1.18048 0.87222 0.83365 0.76860 1.90615 1.13215 1.86599 1.49600 1.20426 0.93887 0.93499 1.00096 1.22449 0.93695 1.00512 0.99464 1.22914 1.00727 0.86887 0.94174 1.67799 1.08645 1.29857 1.10455 1.18897 0.89110 0.92934 0.98889 1.20787 0.94230 0.96219 1.00669 1.21023 0.93842 0.98887 0.97883 1.21140 1.00715 0.92249 0.99520 1.22104 0.93333 1.00748 0.95611 1.18688 0.95247 0.92072 1.00866 1.21856 1.00632 0.98026 0.95501 1.21774 0.98950 0.93514 1.01748 0.93468 0.78263 0.92335 0.91451 0.92128 0.91724 0.76631 0.83919 0.81655 0.84594 0.85184 0.85240 0.81287 0.91931 0.91940 0.91524 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.73 -17.80 5.12 -53.42 -0.27 -18.07 16 10 C 0.18 3.34 2.77 -67.93 -0.19 3.15 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.17 5.50 -26.73 -0.15 -2.32 16 13 C -0.12 -1.48 5.39 -26.73 -0.14 -1.63 16 14 C 0.14 1.76 2.45 -67.93 -0.17 1.60 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 N -0.71 -7.08 5.04 -54.73 -0.28 -7.36 16 17 C 0.56 6.59 7.72 -12.31 -0.09 6.49 16 18 O -0.52 -7.70 13.19 5.32 0.07 -7.63 16 19 C -0.07 -0.71 5.94 -104.35 -0.62 -1.33 16 20 C -0.14 -1.05 9.60 -38.95 -0.37 -1.42 16 21 C 0.13 0.95 11.14 -17.52 -0.20 0.76 16 22 N -0.46 -4.71 10.30 -11.00 -0.11 -4.83 16 23 C 0.12 1.34 6.61 -84.87 -0.56 0.78 16 24 C -0.10 -0.90 9.99 -39.43 -0.39 -1.30 16 25 C -0.10 -0.75 9.94 -39.95 -0.40 -1.15 16 26 C -0.12 -1.05 9.96 -39.89 -0.40 -1.45 16 27 C -0.10 -1.12 9.25 -39.60 -0.37 -1.49 16 28 C -0.07 -0.76 5.76 -106.52 -0.61 -1.37 16 29 C -0.12 -1.61 5.50 -26.70 -0.15 -1.76 16 30 C -0.12 -1.97 5.39 -26.70 -0.14 -2.11 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.40 2.76 6.77 -40.82 -0.28 2.48 16 38 H 0.14 0.59 6.55 -52.48 -0.34 0.24 16 39 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.17 2.12 4.98 -52.48 -0.26 1.86 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -33.03 381.17 -10.97 -44.00 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.63 Total: 9.99 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -5.19 Total: -11.68 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.06 Total: -57.58 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.07 Total: -7.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.03 -10.97 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034687040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.234 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds