Wall clock time and date at job start Tue Mar 31 2020 22:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48494 * 109.47302 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47254 * 119.99903 * 3 2 1 7 7 C 1.38816 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99803 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47647 * 34.99947 * 10 9 7 12 12 C 1.52998 * 109.47350 * 155.00394 * 10 9 7 13 13 C 1.53003 * 109.47397 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46668 * 299.99463 * 13 12 10 15 15 H 1.08995 * 109.47482 * 300.00007 * 14 13 12 16 16 N 1.46502 * 109.46916 * 180.02562 * 14 13 12 17 17 C 1.34781 * 120.00066 * 155.00085 * 16 14 13 18 18 O 1.21557 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.47778 * 119.99676 * 179.97438 * 17 16 14 20 20 C 1.40649 * 119.70166 * 0.24527 * 19 17 16 21 21 C 1.35843 * 120.87582 * 180.25833 * 20 19 17 22 22 C 1.40396 * 119.84190 * 359.49430 * 21 20 19 23 23 C 1.40638 * 121.97150 * 180.27636 * 22 21 20 24 24 C 1.36223 * 118.73008 * 179.97438 * 23 22 21 25 25 N 1.32599 * 121.90115 * 359.97438 * 24 23 22 26 26 C 1.31246 * 122.73822 * 0.02562 * 25 24 23 27 27 C 1.40541 * 119.88745 * 359.97438 * 26 25 24 28 28 C 1.38570 * 119.69480 * 180.02562 * 19 17 16 29 29 C 1.53005 * 109.47116 * 60.00481 * 14 13 12 30 30 C 1.53003 * 109.46959 * 299.99341 * 29 14 13 31 31 H 0.96997 * 119.99862 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99804 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47111 * 59.99225 * 12 10 9 34 34 H 1.09003 * 109.46834 * 299.99842 * 12 10 9 35 35 H 1.09004 * 109.46772 * 179.97438 * 13 12 10 36 36 H 1.08995 * 109.47175 * 59.99659 * 13 12 10 37 37 H 0.97003 * 120.00197 * 334.99720 * 16 14 13 38 38 H 1.07997 * 119.55983 * 0.02562 * 20 19 17 39 39 H 1.08002 * 120.08233 * 179.77704 * 21 20 19 40 40 H 1.07998 * 120.63437 * 359.96488 * 23 22 21 41 41 H 1.08001 * 119.04972 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.05421 * 180.02562 * 26 25 24 43 43 H 1.08007 * 120.34230 * 359.97438 * 28 19 17 44 44 H 1.08995 * 109.47332 * 59.99434 * 29 14 13 45 45 H 1.08999 * 109.46725 * 179.97438 * 29 14 13 46 46 H 1.09000 * 109.47069 * 300.00646 * 30 29 14 47 47 H 1.08994 * 109.46941 * 180.02562 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0027 11 1 2.9687 -3.5501 0.5920 12 6 1.1809 -4.7516 0.6132 13 6 1.9462 -6.0765 0.6150 14 6 2.3105 -6.4568 -0.8214 15 1 1.4000 -6.5639 -1.4110 16 7 3.0427 -7.7258 -0.8199 17 6 3.0342 -8.5101 -1.9159 18 8 2.4193 -8.1644 -2.9059 19 6 3.7733 -9.7898 -1.9144 20 6 4.4792 -10.1855 -0.7641 21 6 5.1708 -11.3544 -0.7383 22 6 5.1764 -12.1879 -1.8680 23 6 5.8723 -13.4099 -1.8884 24 6 5.8326 -14.1673 -3.0200 25 7 5.1585 -13.7847 -4.0959 26 6 4.4867 -12.6585 -4.1493 27 6 4.4632 -11.8035 -3.0342 28 6 3.7607 -10.5911 -3.0449 29 6 3.1877 -5.3620 -1.4320 30 6 2.4225 -4.0371 -1.4338 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0016 33 1 0.2702 -4.8583 0.0239 34 1 0.9216 -4.4808 1.6368 35 1 1.3213 -6.8564 1.0504 36 1 2.8566 -5.9694 1.2046 37 1 3.5337 -8.0014 -0.0300 38 1 4.4743 -9.5499 0.1090 39 1 5.7114 -11.6440 0.1507 40 1 6.4277 -13.7414 -1.0235 41 1 6.3648 -15.1068 -3.0411 42 1 3.9522 -12.3897 -5.0484 43 1 3.2139 -10.2849 -3.9246 44 1 4.0982 -5.2549 -0.8424 45 1 3.4476 -5.6332 -2.4552 46 1 1.5120 -4.1442 -2.0234 47 1 3.0473 -3.2573 -1.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034773379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:20 Heat of formation + Delta-G solvation = 15.609618 kcal Electronic energy + Delta-G solvation = -27742.025441 eV Core-core repulsion = 23888.934553 eV Total energy + Delta-G solvation = -3853.090888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36565 -40.09056 -38.21934 -37.24367 -34.96767 -33.46061 -33.20095 -31.80617 -30.59033 -30.42844 -30.11717 -27.48791 -25.12383 -24.41044 -23.55479 -22.73181 -22.39164 -21.44780 -20.75026 -19.63991 -18.51712 -18.21445 -17.20763 -17.02317 -16.32265 -15.98473 -15.50469 -15.27546 -15.11360 -14.59074 -14.56307 -14.25303 -14.05213 -13.98377 -13.77328 -13.61866 -13.57079 -13.06475 -12.58738 -12.44301 -12.40438 -12.03821 -11.83057 -11.75720 -11.45453 -11.07321 -10.81043 -10.78582 -10.69300 -10.68927 -10.23916 -10.16529 -10.11656 -9.91173 -9.78102 -9.63399 -9.58794 -9.05034 -8.84668 -8.57851 -6.93687 -5.74884 -3.03409 -0.24716 0.22355 1.33271 2.15539 2.93413 3.05819 3.44561 3.49124 3.50033 3.62324 3.91316 4.02113 4.16215 4.24297 4.40603 4.51469 4.60016 4.63601 4.69917 4.88005 5.01594 5.09124 5.18277 5.24426 5.27965 5.40127 5.46465 5.51512 5.58706 5.66285 5.70669 5.74707 5.80726 5.84578 5.86221 6.01219 6.10408 6.19675 6.22530 6.23503 6.28387 6.46278 6.55121 6.62930 6.71856 6.98474 7.14897 7.34038 7.47236 7.70947 8.03380 8.43985 9.54816 10.13469 10.47915 11.47761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.001751 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.165667 B =15990.341631 C =16121.906656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.090 0.910 16 N -0.719 5.719 17 C 0.555 3.445 18 O -0.532 6.532 19 C -0.135 4.135 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.009 4.009 23 C -0.161 4.161 24 C 0.084 3.916 25 N -0.492 5.492 26 C 0.159 3.841 27 C -0.124 4.124 28 C -0.015 4.015 29 C -0.124 4.124 30 C -0.132 4.132 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.150 0.850 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 -29.457 -0.720 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.042 3.958 15 H 0.108 0.892 16 N -0.369 5.369 17 C 0.342 3.658 18 O -0.409 6.409 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.014 4.014 23 C -0.181 4.181 24 C -0.059 4.059 25 N -0.200 5.200 26 C -0.012 4.012 27 C -0.126 4.126 28 C -0.036 4.036 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.172 0.828 42 H 0.185 0.815 43 H 0.168 0.832 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.043 -29.677 -2.049 31.731 hybrid contribution 0.506 1.377 1.165 1.873 sum 11.549 -28.301 -0.884 30.579 Atomic orbital electron populations 1.69651 1.05082 1.25708 1.57729 1.24738 0.95505 0.97647 1.03124 0.86287 0.78526 0.83684 0.77799 1.21323 1.21720 1.21334 1.19197 0.90931 0.84180 1.42623 0.91293 1.42417 1.05780 0.99769 1.88574 1.20236 0.94277 0.85994 0.92776 0.93628 1.21753 0.98957 0.93393 1.01826 1.21755 1.00865 0.98377 0.94754 1.21169 0.95505 0.81489 0.97681 0.89230 1.46099 1.53104 1.21870 1.15869 1.18173 0.80716 0.83510 0.83425 1.90808 1.43475 1.73686 1.32962 1.20033 1.01882 0.96395 0.95467 1.21054 0.94618 0.96292 0.97072 1.20867 1.00505 0.94413 0.97755 1.18305 0.94982 0.94548 0.93544 1.21946 1.00991 0.94669 1.00447 1.22291 0.95671 0.99485 0.88424 1.67505 1.07725 1.16615 1.28138 1.23367 0.93052 0.88226 0.96562 1.19019 1.00836 0.96989 0.95764 1.21492 0.93593 0.90658 0.97886 1.21900 0.98555 0.95365 1.00469 1.22230 0.99792 0.94447 1.00854 0.93506 0.78297 0.91911 0.91320 0.91834 0.91558 0.76854 0.85037 0.84466 0.84197 0.82807 0.81474 0.83239 0.92298 0.92314 0.92451 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.95 5.12 -53.43 -0.27 -18.23 16 10 C 0.18 3.39 2.77 -67.93 -0.19 3.21 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.12 -1.87 5.39 -26.73 -0.14 -2.01 16 13 C -0.12 -1.40 5.39 -26.73 -0.14 -1.54 16 14 C 0.14 1.84 2.45 -67.93 -0.17 1.67 16 15 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 16 N -0.72 -7.39 5.03 -54.77 -0.28 -7.66 16 17 C 0.56 6.63 7.73 -12.36 -0.10 6.53 16 18 O -0.53 -8.39 15.96 5.32 0.08 -8.31 16 19 C -0.13 -1.26 5.87 -104.97 -0.62 -1.88 16 20 C -0.07 -0.48 9.44 -39.53 -0.37 -0.86 16 21 C -0.12 -0.73 9.77 -39.63 -0.39 -1.12 16 22 C -0.01 -0.07 5.75 -106.74 -0.61 -0.68 16 23 C -0.16 -1.00 9.87 -39.40 -0.39 -1.39 16 24 C 0.08 0.59 11.07 -17.95 -0.20 0.39 16 25 N -0.49 -4.35 10.30 -13.12 -0.14 -4.49 16 26 C 0.16 1.26 11.05 -16.93 -0.19 1.07 16 27 C -0.12 -1.04 5.74 -106.88 -0.61 -1.65 16 28 C -0.02 -0.14 9.37 -38.75 -0.36 -0.50 16 29 C -0.12 -1.79 5.50 -26.73 -0.15 -1.93 16 30 C -0.13 -2.37 5.50 -26.73 -0.15 -2.52 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 2.84 6.58 -40.82 -0.27 2.57 16 38 H 0.13 0.57 6.34 -52.49 -0.33 0.24 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.15 1.29 7.61 -52.48 -0.40 0.89 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -34.10 385.92 -10.85 -44.95 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.75 Total: 8.44 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -5.02 Total: -10.43 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.04 Total: -57.84 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.10 -10.85 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034773379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.561 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds