Wall clock time and date at job start Tue Mar 31 2020 23:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48504 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47444 * 299.99777 * 3 2 1 6 6 H 1.48495 * 109.47505 * 60.00223 * 3 2 1 7 7 C 1.38814 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.47665 * 134.45768 * 180.02562 * 9 7 2 11 11 C 1.53513 * 85.97810 * 204.28707 * 10 9 7 12 12 C 1.47671 * 134.45638 * 359.96570 * 9 7 2 13 13 C 1.52675 * 113.57218 * 91.01306 * 11 10 9 14 14 C 1.53338 * 109.11023 * 73.81316 * 13 11 10 15 15 N 1.46882 * 108.76435 * 52.40901 * 14 13 11 16 16 C 1.34774 * 120.47007 * 124.47205 * 15 14 13 17 17 O 1.21678 * 119.99806 * 4.22381 * 16 15 14 18 18 C 1.46905 * 120.00242 * 184.22833 * 16 15 14 19 19 C 1.36378 * 126.76695 * 309.62412 * 18 16 15 20 20 N 1.35467 * 109.76933 * 180.02562 * 19 18 16 21 21 H 0.97001 * 124.78910 * 180.02562 * 20 19 18 22 22 C 1.37966 * 110.42927 * 0.02562 * 20 19 18 23 23 C 1.39119 * 133.19219 * 180.02562 * 22 20 19 24 24 C 1.37764 * 119.92996 * 179.97438 * 23 22 20 25 25 C 1.38757 * 120.63520 * 359.75968 * 24 23 22 26 26 C 1.37757 * 120.29942 * 0.49778 * 25 24 23 27 27 C 1.39277 * 119.66891 * 359.48677 * 26 25 24 28 28 C 1.46885 * 119.06503 * 304.74303 * 15 14 13 29 29 C 1.52664 * 113.56350 * 222.22921 * 11 10 9 30 30 H 0.97005 * 119.99478 * 359.97438 * 1 2 3 31 31 H 1.08994 * 113.79181 * 90.02040 * 10 9 7 32 32 H 1.09001 * 113.78471 * 318.55312 * 10 9 7 33 33 H 1.08996 * 113.79403 * 41.43650 * 12 9 7 34 34 H 1.09002 * 113.78551 * 269.97205 * 12 9 7 35 35 H 1.09000 * 109.52854 * 313.92426 * 13 11 10 36 36 H 1.08995 * 109.59165 * 193.74087 * 13 11 10 37 37 H 1.08999 * 109.58840 * 292.61854 * 14 13 11 38 38 H 1.09011 * 109.58469 * 172.18933 * 14 13 11 39 39 H 1.08001 * 125.11709 * 0.05900 * 19 18 16 40 40 H 1.08000 * 120.03939 * 359.94870 * 23 22 20 41 41 H 1.07997 * 119.68469 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.85457 * 180.28526 * 25 24 23 43 43 H 1.07992 * 120.16406 * 179.75960 * 26 25 24 44 44 H 1.08996 * 109.59242 * 175.04188 * 28 15 14 45 45 H 1.09000 * 109.58726 * 295.47694 * 28 15 14 46 46 H 1.08994 * 109.53354 * 46.07964 * 29 11 10 47 47 H 1.08999 * 109.53272 * 166.22366 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3481 -4.0812 -0.6293 12 6 -0.1044 -2.7567 0.0007 13 6 0.3625 -4.0594 -2.1558 14 6 1.0394 -5.3357 -2.6698 15 7 0.3932 -6.4976 -2.0454 16 6 -0.1286 -7.4801 -2.8062 17 8 0.0010 -7.4470 -4.0156 18 6 -0.8540 -8.5909 -2.1754 19 6 -0.4253 -9.3583 -1.1326 20 7 -1.3663 -10.2838 -0.8276 21 1 -1.2858 -10.9424 -0.1200 22 6 -2.4552 -10.1577 -1.6653 23 6 -3.6605 -10.8444 -1.7701 24 6 -4.5777 -10.4804 -2.7315 25 6 -4.3145 -9.4288 -3.5976 26 6 -3.1245 -8.7400 -3.5131 27 6 -2.1884 -9.0971 -2.5456 28 6 0.3183 -6.5707 -0.5803 29 6 -0.3580 -5.3056 -0.0524 30 1 -0.4849 0.8401 0.0004 31 1 1.8379 -4.2340 0.9991 32 1 2.5598 -4.0342 -0.6580 33 1 -0.7169 -2.1424 -0.6592 34 1 -0.5298 -2.8669 0.9982 35 1 0.9173 -3.1876 -2.5026 36 1 -0.6601 -4.0132 -2.5303 37 1 2.0969 -5.3200 -2.4060 38 1 0.9316 -5.3957 -3.7529 39 1 0.5217 -9.2447 -0.6259 40 1 -3.8769 -11.6623 -1.0988 41 1 -5.5119 -11.0165 -2.8096 42 1 -5.0444 -9.1511 -4.3436 43 1 -2.9203 -7.9243 -4.1908 44 1 -0.2642 -7.4441 -0.2873 45 1 1.3239 -6.6438 -0.1662 46 1 -0.2948 -5.2839 1.0355 47 1 -1.4047 -5.2998 -0.3566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035745020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:21 Heat of formation + Delta-G solvation = 86.970893 kcal Electronic energy + Delta-G solvation = -29345.039995 eV Core-core repulsion = 25495.043564 eV Total energy + Delta-G solvation = -3849.996430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70060 -39.99664 -38.42977 -37.14412 -35.61119 -32.61975 -32.24594 -31.00859 -30.44885 -29.72415 -28.92442 -26.82149 -25.04271 -24.07677 -23.45607 -23.02604 -22.13069 -21.91831 -20.86393 -19.28864 -18.24278 -17.26622 -16.79713 -16.68937 -16.26033 -15.83837 -15.39776 -15.08936 -14.84484 -14.59076 -14.46244 -14.26241 -13.97510 -13.75284 -13.55993 -13.44098 -13.19261 -12.62383 -12.42093 -12.29466 -12.06099 -11.88157 -11.83782 -11.64556 -11.19851 -11.06730 -10.99623 -10.84424 -10.79153 -10.30307 -10.12110 -9.98222 -9.74614 -9.67768 -9.46659 -9.30510 -8.76040 -8.51144 -8.36720 -7.92440 -6.82431 -5.73202 -3.04796 0.82486 1.36997 2.01404 2.72301 2.92117 3.33139 3.40327 3.45733 3.48197 3.73352 4.43792 4.48407 4.53211 4.60366 4.88854 4.97639 4.99618 5.09264 5.17194 5.28107 5.31564 5.35639 5.40055 5.48255 5.49622 5.56011 5.62685 5.74787 5.85517 5.92445 5.98485 6.02833 6.19470 6.25741 6.30688 6.31523 6.35747 6.41642 6.46517 6.50889 6.67936 6.69916 6.86079 6.87374 6.93730 7.12274 7.27897 7.41945 7.59394 7.62996 8.02575 8.35357 9.08686 9.74844 10.65400 11.43745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.002483 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.729855 B =11272.523012 C =11390.902516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.108 4.108 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.115 3.885 15 N -0.599 5.599 16 C 0.588 3.412 17 O -0.545 6.545 18 C -0.211 4.211 19 C 0.095 3.905 20 N -0.582 5.582 21 H 0.419 0.581 22 C 0.088 3.912 23 C -0.128 4.128 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.065 4.065 27 C -0.066 4.066 28 C 0.103 3.897 29 C -0.118 4.118 30 H 0.252 0.748 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.180 0.820 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -24.403 -0.900 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.109 4.109 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.007 4.007 15 N -0.331 5.331 16 C 0.377 3.623 17 O -0.423 6.423 18 C -0.222 4.222 19 C -0.036 4.036 20 N -0.184 5.184 21 H 0.256 0.744 22 C -0.017 4.017 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.160 4.160 26 C -0.083 4.083 27 C -0.071 4.071 28 C -0.020 4.020 29 C -0.157 4.157 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.197 0.803 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.850 -24.083 -1.456 24.826 hybrid contribution 0.547 0.733 0.781 1.203 sum -5.303 -23.350 -0.675 23.954 Atomic orbital electron populations 1.69832 1.04953 1.25075 1.56918 1.24761 0.95636 0.97413 1.02715 0.86092 0.78738 0.83982 0.77229 1.20542 1.21748 1.21864 1.19051 0.90215 0.82108 1.43397 0.90392 1.45968 1.02378 0.99178 1.85985 1.22586 0.94465 0.86604 0.96298 1.22378 0.97842 0.95516 0.95159 1.22233 0.88042 0.88463 0.96495 1.21486 1.00952 0.96841 0.94144 1.21698 0.96195 0.84092 0.98697 1.48003 1.57297 1.20971 1.06878 1.17311 0.77709 0.81190 0.86103 1.90777 1.59622 1.77852 1.14027 1.20003 0.97222 1.02853 1.02147 1.22024 0.94563 0.90573 0.96419 1.41482 1.14564 1.31142 1.31185 0.74353 1.18215 0.90387 0.99021 0.94086 1.19996 0.91953 1.01393 1.01551 1.20814 0.98673 0.97387 0.95038 1.20954 0.97256 0.97181 1.00647 1.20609 0.92214 0.99162 0.96329 1.18724 0.93938 0.96695 0.97725 1.21858 1.01118 0.99531 0.79460 1.21724 0.99740 0.93966 1.00257 0.93790 0.95263 0.94162 0.91019 0.95843 0.89488 0.92131 0.91447 0.89348 0.80268 0.86158 0.85641 0.85729 0.85570 0.89884 0.91332 0.90879 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.27 3.53 -179.76 -0.64 -15.91 16 10 C 0.13 2.47 7.72 -3.15 -0.02 2.45 16 11 C -0.11 -1.91 0.77 -154.42 -0.12 -2.03 16 12 C 0.17 3.99 6.64 -3.15 -0.02 3.97 16 13 C -0.10 -1.67 5.22 -26.72 -0.14 -1.81 16 14 C 0.11 1.75 6.29 -3.66 -0.02 1.72 16 15 N -0.60 -8.38 2.95 -174.40 -0.51 -8.90 16 16 C 0.59 8.96 7.58 -12.75 -0.10 8.86 16 17 O -0.54 -10.18 16.51 5.21 0.09 -10.09 16 18 C -0.21 -2.68 5.30 -103.31 -0.55 -3.22 16 19 C 0.10 0.83 9.45 -16.62 -0.16 0.67 16 20 N -0.58 -4.31 5.99 -10.48 -0.06 -4.37 16 21 H 0.42 1.57 8.96 -40.82 -0.37 1.20 16 22 C 0.09 0.89 7.26 -83.97 -0.61 0.28 16 23 C -0.13 -1.09 10.07 -39.43 -0.40 -1.49 16 24 C -0.10 -0.85 10.01 -39.56 -0.40 -1.25 16 25 C -0.14 -1.40 10.03 -39.57 -0.40 -1.79 16 26 C -0.06 -0.80 10.09 -39.37 -0.40 -1.20 16 27 C -0.07 -0.85 6.36 -104.95 -0.67 -1.51 16 28 C 0.10 1.20 5.76 -3.90 -0.02 1.18 16 29 C -0.12 -1.66 5.24 -26.98 -0.14 -1.80 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.04 0.76 7.41 -51.93 -0.38 0.37 16 33 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 34 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.09 1.72 8.01 -51.93 -0.42 1.31 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 38 H 0.09 1.41 6.99 -51.92 -0.36 1.05 16 39 H 0.18 1.00 7.55 -52.49 -0.40 0.60 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.08 0.80 4.49 -51.93 -0.23 0.57 16 45 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 46 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -35.05 376.28 -10.94 -45.99 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.68 Total: 0.67 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.41 Total: -3.61 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.58 Total: -55.83 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.05 -10.94 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035745020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.959 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds