Wall clock time and date at job start Tue Mar 31 2020 23:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48504 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47444 * 299.99777 * 3 2 1 6 6 H 1.48495 * 109.47505 * 60.00223 * 3 2 1 7 7 C 1.38814 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.47665 * 134.45768 * 180.02562 * 9 7 2 11 11 C 1.53513 * 85.97810 * 204.28707 * 10 9 7 12 12 C 1.47671 * 134.45638 * 359.96570 * 9 7 2 13 13 C 1.52675 * 113.57218 * 91.01306 * 11 10 9 14 14 C 1.53338 * 109.11023 * 73.81316 * 13 11 10 15 15 N 1.46882 * 108.76435 * 52.40901 * 14 13 11 16 16 C 1.34774 * 120.47007 * 124.47205 * 15 14 13 17 17 O 1.21678 * 119.99806 * 4.22381 * 16 15 14 18 18 C 1.46905 * 120.00242 * 184.22833 * 16 15 14 19 19 C 1.36378 * 126.76695 * 309.62412 * 18 16 15 20 20 N 1.35467 * 109.76933 * 180.02562 * 19 18 16 21 21 H 0.97001 * 124.78910 * 180.02562 * 20 19 18 22 22 C 1.37966 * 110.42927 * 0.02562 * 20 19 18 23 23 C 1.39119 * 133.19219 * 180.02562 * 22 20 19 24 24 C 1.37764 * 119.92996 * 179.97438 * 23 22 20 25 25 C 1.38757 * 120.63520 * 359.75968 * 24 23 22 26 26 C 1.37757 * 120.29942 * 0.49778 * 25 24 23 27 27 C 1.39277 * 119.66891 * 359.48677 * 26 25 24 28 28 C 1.46885 * 119.06503 * 304.74303 * 15 14 13 29 29 C 1.52664 * 113.56350 * 222.22921 * 11 10 9 30 30 H 0.97005 * 119.99478 * 359.97438 * 1 2 3 31 31 H 1.08994 * 113.79181 * 90.02040 * 10 9 7 32 32 H 1.09001 * 113.78471 * 318.55312 * 10 9 7 33 33 H 1.08996 * 113.79403 * 41.43650 * 12 9 7 34 34 H 1.09002 * 113.78551 * 269.97205 * 12 9 7 35 35 H 1.09000 * 109.52854 * 313.92426 * 13 11 10 36 36 H 1.08995 * 109.59165 * 193.74087 * 13 11 10 37 37 H 1.08999 * 109.58840 * 292.61854 * 14 13 11 38 38 H 1.09011 * 109.58469 * 172.18933 * 14 13 11 39 39 H 1.08001 * 125.11709 * 0.05900 * 19 18 16 40 40 H 1.08000 * 120.03939 * 359.94870 * 23 22 20 41 41 H 1.07997 * 119.68469 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.85457 * 180.28526 * 25 24 23 43 43 H 1.07992 * 120.16406 * 179.75960 * 26 25 24 44 44 H 1.08996 * 109.59242 * 175.04188 * 28 15 14 45 45 H 1.09000 * 109.58726 * 295.47694 * 28 15 14 46 46 H 1.08994 * 109.53354 * 46.07964 * 29 11 10 47 47 H 1.08999 * 109.53272 * 166.22366 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3481 -4.0812 -0.6293 12 6 -0.1044 -2.7567 0.0007 13 6 0.3625 -4.0594 -2.1558 14 6 1.0394 -5.3357 -2.6698 15 7 0.3932 -6.4976 -2.0454 16 6 -0.1286 -7.4801 -2.8062 17 8 0.0010 -7.4470 -4.0156 18 6 -0.8540 -8.5909 -2.1754 19 6 -0.4253 -9.3583 -1.1326 20 7 -1.3663 -10.2838 -0.8276 21 1 -1.2858 -10.9424 -0.1200 22 6 -2.4552 -10.1577 -1.6653 23 6 -3.6605 -10.8444 -1.7701 24 6 -4.5777 -10.4804 -2.7315 25 6 -4.3145 -9.4288 -3.5976 26 6 -3.1245 -8.7400 -3.5131 27 6 -2.1884 -9.0971 -2.5456 28 6 0.3183 -6.5707 -0.5803 29 6 -0.3580 -5.3056 -0.0524 30 1 -0.4849 0.8401 0.0004 31 1 1.8379 -4.2340 0.9991 32 1 2.5598 -4.0342 -0.6580 33 1 -0.7169 -2.1424 -0.6592 34 1 -0.5298 -2.8669 0.9982 35 1 0.9173 -3.1876 -2.5026 36 1 -0.6601 -4.0132 -2.5303 37 1 2.0969 -5.3200 -2.4060 38 1 0.9316 -5.3957 -3.7529 39 1 0.5217 -9.2447 -0.6259 40 1 -3.8769 -11.6623 -1.0988 41 1 -5.5119 -11.0165 -2.8096 42 1 -5.0444 -9.1511 -4.3436 43 1 -2.9203 -7.9243 -4.1908 44 1 -0.2642 -7.4441 -0.2873 45 1 1.3239 -6.6438 -0.1662 46 1 -0.2948 -5.2839 1.0355 47 1 -1.4047 -5.2998 -0.3566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035745020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:20 Heat of formation + Delta-G solvation = 65.122569 kcal Electronic energy + Delta-G solvation = -29345.987409 eV Core-core repulsion = 25495.043564 eV Total energy + Delta-G solvation = -3850.943845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.46707 -41.30157 -39.81322 -37.85566 -36.98248 -34.40828 -33.27318 -32.13089 -31.97157 -30.45161 -29.81279 -28.59411 -26.73291 -25.45584 -24.60335 -23.84133 -23.48445 -22.65916 -22.29559 -20.38185 -19.15681 -18.67960 -18.44998 -17.72536 -17.19241 -16.85754 -16.75441 -16.30429 -16.13305 -16.01294 -15.62200 -15.31222 -15.10170 -14.98698 -14.73486 -14.53452 -14.34810 -14.02474 -13.74529 -13.58807 -13.39296 -13.09421 -12.89014 -12.84168 -12.64026 -12.61134 -12.55150 -12.13235 -12.12592 -11.91727 -11.64630 -11.54606 -11.20296 -11.03472 -10.90881 -10.80339 -10.58581 -9.57770 -9.23012 -8.85534 -8.67711 -7.87458 -5.19268 0.09047 0.62722 1.17438 1.44559 1.45484 1.55402 1.84476 2.09364 2.34697 2.48862 2.96346 3.33316 3.44402 3.64076 3.67644 3.75519 3.93851 4.00016 4.03719 4.19872 4.22880 4.32055 4.41175 4.44512 4.46821 4.60042 4.63947 4.71860 4.76806 4.79251 4.81428 4.84676 4.93163 4.97412 5.06803 5.13941 5.16787 5.22528 5.31499 5.36762 5.48548 5.55533 5.59249 5.61930 5.65461 5.71968 5.78083 5.98670 6.16069 6.50460 6.63258 6.95695 7.23722 7.65174 8.62449 9.29489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.002483 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.729855 B =11272.523012 C =11390.902516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.639 5.639 10 C 0.132 3.868 11 C -0.082 4.082 12 C 0.167 3.833 13 C -0.089 4.089 14 C 0.126 3.874 15 N -0.598 5.598 16 C 0.589 3.411 17 O -0.594 6.594 18 C -0.264 4.264 19 C 0.133 3.867 20 N -0.560 5.560 21 H 0.441 0.559 22 C 0.078 3.922 23 C -0.118 4.118 24 C -0.107 4.107 25 C -0.140 4.140 26 C -0.106 4.106 27 C -0.096 4.096 28 C 0.107 3.893 29 C -0.112 4.112 30 H 0.245 0.755 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.221 0.779 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -28.122 1.507 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.354 4.354 8 H 0.101 0.899 9 N -0.366 5.366 10 C 0.008 3.992 11 C -0.083 4.083 12 C 0.042 3.958 13 C -0.127 4.127 14 C 0.003 3.997 15 N -0.329 5.329 16 C 0.379 3.621 17 O -0.475 6.475 18 C -0.274 4.274 19 C -0.001 4.001 20 N -0.163 5.163 21 H 0.283 0.717 22 C -0.028 4.028 23 C -0.138 4.138 24 C -0.125 4.125 25 C -0.159 4.159 26 C -0.125 4.125 27 C -0.100 4.100 28 C -0.014 4.014 29 C -0.151 4.151 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.075 -27.869 1.000 28.345 hybrid contribution 0.254 1.817 0.031 1.835 sum -4.821 -26.052 1.031 26.514 Atomic orbital electron populations 1.70033 1.06421 1.25188 1.58803 1.25583 0.96487 1.00753 1.03584 0.85066 0.78313 0.79798 0.76528 1.18846 1.22285 1.22103 1.19447 0.90757 0.83536 1.41682 0.89932 1.46337 1.03477 1.00706 1.86047 1.22771 0.95415 0.83316 0.97697 1.22087 0.96816 0.94677 0.94711 1.22171 0.86997 0.90983 0.95686 1.21347 1.00018 0.97104 0.94277 1.21457 0.96685 0.83490 0.98051 1.48045 1.56849 1.20048 1.07960 1.17747 0.76957 0.81809 0.85555 1.90738 1.61313 1.79182 1.16316 1.19852 0.98097 1.04331 1.05165 1.22502 0.95120 0.88409 0.94047 1.41475 1.13253 1.30824 1.30777 0.71717 1.18375 0.91620 0.98560 0.94196 1.20444 0.90818 1.01301 1.01263 1.21202 1.00024 0.96856 0.94463 1.21208 0.96435 0.97165 1.01082 1.20613 0.94203 1.00166 0.97529 1.19021 0.94324 0.98061 0.98612 1.22051 1.02822 0.98943 0.77596 1.21688 0.99066 0.93124 1.01183 0.94575 0.92818 0.92956 0.95183 0.96589 0.92557 0.93401 0.89965 0.90726 0.76288 0.82663 0.82574 0.84481 0.88336 0.87069 0.88625 0.89064 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 11.39 21.65 0.25 -58.71 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 7 C -0.23 -12.70 10.70 84.03 0.90 -11.80 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.64 -32.40 3.53 -722.63 -2.55 -34.96 16 10 C 0.13 4.94 7.72 86.32 0.67 5.61 16 11 C -0.08 -2.88 0.77 -52.03 -0.04 -2.92 16 12 C 0.17 7.97 6.64 86.32 0.57 8.54 16 13 C -0.09 -3.21 5.22 30.60 0.16 -3.05 16 14 C 0.13 3.83 6.29 86.42 0.54 4.38 16 15 N -0.60 -16.01 2.95 -823.92 -2.43 -18.44 16 16 C 0.59 17.93 7.58 86.51 0.66 18.59 16 17 O -0.59 -23.34 16.51 -4.28 -0.07 -23.41 16 18 C -0.26 -6.33 5.30 -19.02 -0.10 -6.43 16 19 C 0.13 1.76 9.45 83.70 0.79 2.55 16 20 N -0.56 -5.79 5.99 -187.08 -1.12 -6.91 16 21 H 0.44 0.84 8.96 -92.71 -0.83 0.01 16 22 C 0.08 1.36 7.26 38.91 0.28 1.64 16 23 C -0.12 -1.59 10.07 22.37 0.23 -1.37 16 24 C -0.11 -1.54 10.01 22.28 0.22 -1.32 16 25 C -0.14 -2.75 10.03 22.28 0.22 -2.53 16 26 C -0.11 -2.80 10.09 22.41 0.23 -2.58 16 27 C -0.10 -2.41 6.36 -20.08 -0.13 -2.54 16 28 C 0.11 2.12 5.76 86.26 0.50 2.61 16 29 C -0.11 -2.91 5.24 30.44 0.16 -2.75 16 30 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 31 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 32 H 0.05 1.84 7.41 -2.39 -0.02 1.83 16 33 H 0.03 1.66 7.12 -2.39 -0.02 1.64 16 34 H 0.02 0.79 8.09 -2.39 -0.02 0.77 16 35 H 0.06 2.36 8.01 -2.39 -0.02 2.34 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.27 7.49 -2.39 -0.02 2.26 16 38 H 0.07 2.50 6.99 -2.38 -0.02 2.49 16 39 H 0.22 1.05 7.55 -2.91 -0.02 1.03 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.10 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.11 1.62 4.49 -2.39 -0.01 1.61 16 45 H 0.10 1.47 8.08 -2.39 -0.02 1.46 16 46 H 0.09 2.11 8.12 -2.39 -0.02 2.09 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -83.07 376.28 2.59 -80.48 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.17 Total: 10.31 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.32 Total: 2.95 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -5.86 Total: -119.03 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.07 2.59 -80.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035745020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.600 kcal (2) G-P(sol) polarization free energy of solvation -83.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds