Wall clock time and date at job start Tue Mar 31 2020 22:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48496 * 109.47377 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47384 * 300.00529 * 3 2 1 6 6 H 1.48507 * 109.46852 * 60.00169 * 3 2 1 7 7 C 1.38806 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.47172 * 135.99600 * 359.62743 * 9 7 2 11 11 C 1.52938 * 87.85820 * 206.92393 * 10 9 7 12 12 C 1.47163 * 136.00603 * 179.97438 * 9 7 2 13 13 C 1.52560 * 114.11425 * 87.94782 * 11 10 9 14 14 C 1.53354 * 109.12938 * 190.31981 * 13 11 10 15 15 N 1.46890 * 108.74978 * 307.75680 * 14 13 11 16 16 C 1.34777 * 120.46372 * 235.64999 * 15 14 13 17 17 O 1.21594 * 120.00358 * 174.20909 * 16 15 14 18 18 C 1.47505 * 119.99548 * 354.21143 * 16 15 14 19 19 C 1.39340 * 120.21209 * 305.95341 * 18 16 15 20 20 C 1.38316 * 120.49819 * 180.02562 * 19 18 16 21 21 C 1.37915 * 120.59482 * 359.97438 * 20 19 18 22 22 C 1.39534 * 119.98500 * 359.97438 * 21 20 19 23 23 C 1.46571 * 133.95729 * 180.02562 * 22 21 20 24 24 C 1.34221 * 106.88945 * 179.25828 * 23 22 21 25 25 N 1.36899 * 109.88329 * 0.66940 * 24 23 22 26 26 H 0.97002 * 125.01517 * 179.38186 * 25 24 23 27 27 C 1.37124 * 109.96452 * 359.40806 * 25 24 23 28 28 C 1.46888 * 119.07499 * 55.62408 * 15 14 13 29 29 C 1.52559 * 114.12010 * 220.61877 * 11 10 9 30 30 H 0.96997 * 120.00549 * 0.02562 * 1 2 3 31 31 H 1.08993 * 113.48944 * 321.67142 * 10 9 7 32 32 H 1.09002 * 113.48825 * 92.18256 * 10 9 7 33 33 H 1.08998 * 113.49341 * 267.82926 * 12 9 7 34 34 H 1.09005 * 113.48022 * 38.33517 * 12 9 7 35 35 H 1.08999 * 109.52366 * 310.21240 * 13 11 10 36 36 H 1.09002 * 109.52517 * 70.42312 * 13 11 10 37 37 H 1.09003 * 109.59049 * 187.98259 * 14 13 11 38 38 H 1.08996 * 109.59446 * 67.53471 * 14 13 11 39 39 H 1.08006 * 119.75080 * 0.02562 * 19 18 16 40 40 H 1.08003 * 119.70578 * 180.02562 * 20 19 18 41 41 H 1.07995 * 120.00218 * 179.97438 * 21 20 19 42 42 H 1.08003 * 126.55302 * 359.97438 * 23 22 21 43 43 H 1.08001 * 125.05656 * 180.08138 * 24 23 22 44 44 H 1.08996 * 109.59521 * 184.58995 * 28 15 14 45 45 H 1.09004 * 109.59457 * 64.14629 * 28 15 14 46 46 H 1.09001 * 109.52628 * 289.56869 * 29 11 10 47 47 H 1.08993 * 109.52988 * 49.71227 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.0891 -2.7937 0.0042 11 6 0.3451 -4.0905 0.6889 12 6 1.6816 -3.8160 -0.0029 13 6 0.4023 -4.0029 2.2109 14 6 1.0884 -5.2591 2.7612 15 7 0.4227 -6.4436 2.2030 16 6 -0.0848 -7.3897 3.0177 17 8 -0.7255 -8.3126 2.5526 18 6 0.1370 -7.3056 4.4735 19 6 1.4298 -7.1898 4.9803 20 6 1.6445 -7.1109 6.3444 21 6 0.5838 -7.1450 7.2252 22 6 -0.7203 -7.2594 6.7421 23 6 -2.0391 -7.3226 7.3786 24 6 -2.9442 -7.4157 6.3918 25 7 -2.3103 -7.4322 5.1786 26 1 -2.7548 -7.5026 4.3193 27 6 -0.9542 -7.3350 5.3575 28 6 0.3174 -6.5822 0.7444 29 6 -0.3745 -5.3356 0.1796 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7195 -2.1621 0.6300 32 1 -0.5014 -2.9461 -0.9932 33 1 1.7499 -4.2459 -1.0022 34 1 2.5476 -4.0483 0.6170 35 1 0.9700 -3.1197 2.5038 36 1 -0.6097 -3.9358 2.6103 37 1 1.0080 -5.2731 3.8482 38 1 2.1388 -5.2591 2.4702 39 1 2.2704 -7.1614 4.3029 40 1 2.6519 -7.0210 6.7233 41 1 0.7625 -7.0832 8.2884 42 1 -2.2442 -7.2879 8.4384 43 1 -4.0129 -7.4787 6.5343 44 1 -0.2706 -7.4676 0.5029 45 1 1.3142 -6.6740 0.3130 46 1 -1.4138 -5.3155 0.5076 47 1 -0.3365 -5.3585 -0.9095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035802060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:41 Heat of formation + Delta-G solvation = 87.622918 kcal Electronic energy + Delta-G solvation = -29648.977505 eV Core-core repulsion = 25799.009349 eV Total energy + Delta-G solvation = -3849.968157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56372 -40.21774 -38.75578 -36.91496 -35.75992 -32.75326 -32.22113 -30.96664 -30.39551 -29.61126 -28.93443 -26.94511 -25.00275 -24.41578 -23.23384 -22.97627 -21.92290 -21.48906 -20.88054 -19.74768 -18.28265 -17.51067 -16.84023 -16.69349 -16.27383 -15.85969 -15.22430 -15.04052 -14.87149 -14.59788 -14.49278 -14.21359 -13.81797 -13.68886 -13.62761 -13.34636 -13.04150 -12.78225 -12.62995 -12.27477 -12.17670 -11.95960 -11.73812 -11.66654 -11.53932 -11.09812 -11.02376 -10.88554 -10.82953 -10.40459 -10.25776 -9.99132 -9.73927 -9.66613 -9.61033 -9.21633 -8.81630 -8.46232 -8.41101 -7.89748 -6.87310 -5.77567 -3.09513 0.69476 1.45749 2.38457 2.72323 2.99183 3.07335 3.37403 3.42827 3.45372 3.71040 4.38923 4.44654 4.55268 4.79447 4.83841 5.00561 5.03582 5.07218 5.16566 5.20646 5.34657 5.35737 5.38864 5.47947 5.59252 5.62809 5.66901 5.73071 5.76698 5.84920 5.87295 5.98915 6.14821 6.17374 6.26403 6.33293 6.34207 6.47179 6.50653 6.53611 6.59394 6.62741 6.79320 6.82725 6.92754 7.21639 7.30981 7.35145 7.45382 7.56129 7.97090 8.13024 9.03149 9.69893 10.64804 11.39883 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.002945 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.838328 B = 9504.417944 C =10070.527966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.167 3.833 11 C -0.116 4.116 12 C 0.128 3.872 13 C -0.093 4.093 14 C 0.104 3.896 15 N -0.595 5.595 16 C 0.560 3.440 17 O -0.551 6.551 18 C -0.135 4.135 19 C -0.063 4.063 20 C -0.153 4.153 21 C -0.052 4.052 22 C -0.116 4.116 23 C -0.204 4.204 24 C 0.052 3.948 25 N -0.587 5.587 26 H 0.420 0.580 27 C 0.139 3.861 28 C 0.114 3.886 29 C -0.113 4.113 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -16.444 13.269 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.333 5.333 10 C 0.041 3.959 11 C -0.117 4.117 12 C 0.001 3.999 13 C -0.131 4.131 14 C -0.019 4.019 15 N -0.327 5.327 16 C 0.348 3.652 17 O -0.430 6.430 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.172 4.172 21 C -0.070 4.070 22 C -0.120 4.120 23 C -0.229 4.229 24 C -0.074 4.074 25 N -0.189 5.189 26 H 0.257 0.743 27 C 0.029 3.971 28 C -0.008 4.008 29 C -0.152 4.152 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.447 -16.537 12.896 21.113 hybrid contribution 0.208 1.056 -0.667 1.267 sum -2.239 -15.481 12.228 19.855 Atomic orbital electron populations 1.69839 1.04990 1.25145 1.56670 1.24774 0.95646 0.97438 1.02602 0.86073 0.78748 0.83848 0.77265 1.20467 1.21815 1.21705 1.18964 0.90092 0.81521 1.43712 0.90194 1.45572 1.02647 0.99201 1.85916 1.22032 0.88793 0.88939 0.96166 1.22099 0.98804 0.95712 0.95093 1.22395 0.94435 0.86774 0.96259 1.21400 1.00747 0.96930 0.93985 1.22019 0.96652 0.84318 0.98869 1.48088 1.56577 1.21174 1.06833 1.18342 0.78799 0.81927 0.86123 1.90757 1.40875 1.34364 1.77045 1.18779 0.92434 1.11142 0.91756 1.20990 0.94460 0.96897 0.95920 1.20797 0.99052 1.04776 0.92580 1.20660 0.90285 0.96421 0.99677 1.19183 0.94051 1.07265 0.91529 1.21693 0.90067 1.12401 0.98739 1.21903 0.98452 1.03428 0.83581 1.41796 1.04707 1.63399 1.08979 0.74274 1.17906 0.83609 1.01498 0.94089 1.21662 1.01259 0.99324 0.78567 1.21721 0.99362 0.93678 1.00422 0.93766 0.91242 0.95899 0.95216 0.94527 0.89231 0.92321 0.89541 0.91011 0.85130 0.85284 0.85635 0.83380 0.81104 0.89448 0.91255 0.91972 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 11.51 55.49 0.64 -26.39 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -5.93 10.74 -15.06 -0.16 -6.09 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.14 3.55 -184.65 -0.66 -15.80 16 10 C 0.17 3.82 6.54 -8.21 -0.05 3.76 16 11 C -0.12 -2.05 0.84 -155.01 -0.13 -2.18 16 12 C 0.13 2.50 7.63 -8.20 -0.06 2.44 16 13 C -0.09 -1.53 5.28 -26.77 -0.14 -1.67 16 14 C 0.10 1.39 5.51 -3.65 -0.02 1.37 16 15 N -0.60 -8.25 2.94 -173.86 -0.51 -8.77 16 16 C 0.56 8.27 7.15 -12.48 -0.09 8.18 16 17 O -0.55 -9.53 16.48 5.28 0.09 -9.44 16 18 C -0.14 -1.79 4.62 -104.87 -0.48 -2.27 16 19 C -0.06 -0.70 7.71 -39.14 -0.30 -1.00 16 20 C -0.15 -1.47 10.00 -39.67 -0.40 -1.87 16 21 C -0.05 -0.51 10.09 -39.22 -0.40 -0.91 16 22 C -0.12 -1.34 6.37 -105.15 -0.67 -2.01 16 23 C -0.20 -1.96 11.09 -37.64 -0.42 -2.37 16 24 C 0.05 0.47 11.82 -16.71 -0.20 0.27 16 25 N -0.59 -6.59 6.04 -10.45 -0.06 -6.66 16 26 H 0.42 4.45 8.96 -40.82 -0.37 4.08 16 27 C 0.14 1.80 6.99 -83.76 -0.59 1.21 16 28 C 0.11 1.55 6.35 -3.64 -0.02 1.53 16 29 C -0.11 -1.68 5.30 -26.77 -0.14 -1.82 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.07 1.79 7.11 -51.93 -0.37 1.42 16 32 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.04 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.09 1.70 7.95 -51.93 -0.41 1.29 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.09 5.27 -51.93 -0.27 0.81 16 38 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.13 1.26 7.75 -52.48 -0.41 0.85 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.09 1.22 6.97 -51.93 -0.36 0.85 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -33.41 377.11 -10.95 -44.36 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.74 Total: 3.86 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.37 Total: -3.75 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.59 Total: -57.61 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.41 -10.95 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035802060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.985 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds