Wall clock time and date at job start Tue Mar 31 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48493 * 109.47109 * 95.90905 * 3 2 1 5 5 H 1.48500 * 109.46999 * 335.91000 * 3 2 1 6 6 H 1.48500 * 109.46993 * 215.90900 * 3 2 1 7 7 C 1.38810 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00340 * 30.98080 * 7 2 1 9 9 N 1.36942 * 119.99918 * 210.98394 * 7 2 1 10 10 C 1.48157 * 126.40319 * 2.93849 * 9 7 2 11 11 C 1.55291 * 107.04432 * 175.04301 * 10 9 7 12 12 C 1.53744 * 101.83516 * 337.51492 * 11 10 9 13 13 H 1.08994 * 111.31056 * 281.03929 * 12 11 10 14 14 C 1.52244 * 114.73820 * 153.64963 * 12 11 10 15 15 N 1.48172 * 105.93473 * 190.58453 * 14 12 11 16 16 C 1.34770 * 119.16445 * 231.32657 * 15 14 12 17 17 O 1.21669 * 120.00705 * 4.79292 * 16 15 14 18 18 C 1.46918 * 119.99597 * 184.78998 * 16 15 14 19 19 C 1.36377 * 126.76889 * 20.85660 * 18 16 15 20 20 N 1.35471 * 109.76864 * 179.97438 * 19 18 16 21 21 H 0.96996 * 124.78516 * 180.02562 * 20 19 18 22 22 C 1.37957 * 110.42506 * 359.97438 * 20 19 18 23 23 C 1.39126 * 133.18383 * 180.02562 * 22 20 19 24 24 C 1.37763 * 119.92919 * 179.97438 * 23 22 20 25 25 C 1.38757 * 120.63645 * 0.02617 * 24 23 22 26 26 C 1.37759 * 120.30038 * 359.97438 * 25 24 23 27 27 C 1.39285 * 119.66781 * 359.73497 * 26 25 24 28 28 C 1.46596 * 121.14628 * 51.12825 * 15 14 12 29 29 C 1.53951 * 110.57639 * 312.39307 * 28 15 14 30 30 C 1.45462 * 126.40682 * 182.62742 * 9 7 2 31 31 H 1.09001 * 109.26752 * 93.83568 * 30 9 7 32 32 H 0.97003 * 120.00266 * 185.09159 * 1 2 3 33 33 H 1.09005 * 109.91688 * 294.38714 * 10 9 7 34 34 H 1.09003 * 109.92214 * 55.48776 * 10 9 7 35 35 H 1.08993 * 110.95931 * 95.65415 * 11 10 9 36 36 H 1.09003 * 110.95109 * 219.38327 * 11 10 9 37 37 H 1.09000 * 110.07053 * 309.63087 * 14 12 11 38 38 H 1.08999 * 110.07032 * 71.21071 * 14 12 11 39 39 H 1.08004 * 125.10957 * 359.93389 * 19 18 16 40 40 H 1.08002 * 120.03276 * 359.93978 * 23 22 20 41 41 H 1.08004 * 119.68624 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.85136 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.16949 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.25227 * 192.11191 * 28 15 14 45 45 H 1.08999 * 109.22646 * 72.66140 * 28 15 14 46 46 H 1.08996 * 109.88319 * 291.59825 * 29 28 15 47 47 H 1.09006 * 109.88327 * 170.51282 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6226 1.9743 1.3926 5 1 1.3909 2.6854 -0.5715 6 1 3.4798 1.4793 -0.8211 7 6 2.0102 -1.2022 -0.0005 8 1 1.5857 -2.0705 -0.4823 9 7 3.2330 -1.2871 0.6100 10 6 3.9174 -0.2092 1.3614 11 6 5.2082 -0.8249 1.9665 12 6 4.8612 -2.3225 1.9922 13 1 4.2177 -2.5655 2.8377 14 6 6.0621 -3.2560 1.9280 15 7 5.5111 -4.6128 1.7025 16 6 5.8960 -5.6206 2.5104 17 8 6.6174 -5.3946 3.4637 18 6 5.4443 -6.9922 2.2399 19 6 4.9887 -7.4822 1.0516 20 7 4.6651 -8.7905 1.1893 21 1 4.3188 -9.3526 0.4787 22 6 4.8987 -9.2107 2.4824 23 6 4.7378 -10.4311 3.1306 24 6 5.0656 -10.5499 4.4634 25 6 5.5562 -9.4616 5.1707 26 6 5.7225 -8.2449 4.5465 27 6 5.4008 -8.1121 3.1979 28 6 4.5551 -4.8731 0.6221 29 6 3.4357 -3.8161 0.6238 30 6 4.1001 -2.4545 0.6473 31 1 4.8149 -2.3980 -0.1736 32 1 -0.4851 -0.8367 0.0746 33 1 4.1763 0.6070 0.6868 34 1 3.2692 0.1582 2.1570 35 1 6.0686 -0.6351 1.3249 36 1 5.3845 -0.4483 2.9741 37 1 6.7123 -2.9727 1.1002 38 1 6.6138 -3.2209 2.8674 39 1 4.8987 -6.9127 0.1383 40 1 4.3558 -11.2843 2.5897 41 1 4.9387 -11.4991 4.9629 42 1 5.8087 -9.5689 6.2152 43 1 6.1049 -7.3993 5.0989 44 1 4.1166 -5.8613 0.7604 45 1 5.0772 -4.8422 -0.3343 46 1 2.8111 -3.9391 1.5085 47 1 2.8292 -3.9171 -0.2763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036764591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:51 Heat of formation + Delta-G solvation = 55.962457 kcal Electronic energy + Delta-G solvation = -29538.788608 eV Core-core repulsion = 25687.447551 eV Total energy + Delta-G solvation = -3851.341057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.59700 -41.23709 -39.58073 -37.96564 -36.85378 -34.82013 -33.29946 -32.99284 -31.96009 -30.52295 -30.45762 -29.15940 -26.78027 -25.22078 -24.46329 -23.73723 -22.96208 -22.66711 -22.16267 -21.09528 -20.19470 -19.23913 -18.60269 -17.90949 -17.19084 -16.94316 -16.73998 -16.52465 -16.35227 -16.10759 -15.68912 -15.38874 -15.25234 -14.96990 -14.83801 -14.63488 -14.54919 -14.19199 -13.97540 -13.89590 -13.36695 -13.29731 -12.90640 -12.73481 -12.67864 -12.60217 -12.30083 -12.19967 -12.05497 -11.95415 -11.76237 -11.49303 -11.29670 -11.04139 -10.92689 -10.67723 -10.55393 -9.71743 -9.28431 -9.10023 -8.76460 -8.63035 -5.31437 -0.01031 0.56428 1.00612 1.42900 1.51512 1.70428 1.84982 2.10683 2.34123 2.57878 2.94157 2.97969 3.27936 3.60206 3.66174 3.72172 3.82930 3.84310 3.88536 4.05526 4.08717 4.17989 4.27977 4.33866 4.35567 4.38487 4.48780 4.55570 4.59678 4.66424 4.71866 4.76195 4.80092 4.82077 4.85984 4.93252 4.98476 5.11833 5.16238 5.31153 5.42900 5.45313 5.50232 5.54535 5.62006 5.67063 5.69159 6.11501 6.13589 6.40841 6.53582 6.83642 7.21128 7.56070 8.21749 8.88154 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002755 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.186173 B =10160.856707 C =10767.185505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.074 4.074 3 Si 1.089 2.911 4 H -0.277 1.277 5 H -0.309 1.309 6 H -0.274 1.274 7 C -0.310 4.310 8 H 0.059 0.941 9 N -0.622 5.622 10 C 0.102 3.898 11 C -0.107 4.107 12 C -0.112 4.112 13 H 0.057 0.943 14 C 0.137 3.863 15 N -0.607 5.607 16 C 0.584 3.416 17 O -0.590 6.590 18 C -0.270 4.270 19 C 0.125 3.875 20 N -0.561 5.561 21 H 0.441 0.559 22 C 0.074 3.926 23 C -0.120 4.120 24 C -0.105 4.105 25 C -0.140 4.140 26 C -0.101 4.101 27 C -0.095 4.095 28 C 0.099 3.901 29 C -0.122 4.122 30 C 0.156 3.844 31 H 0.036 0.964 32 H 0.250 0.750 33 H 0.031 0.969 34 H 0.022 0.978 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.227 0.773 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.041 0.959 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.048 -22.684 2.181 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.269 4.269 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.238 1.238 6 H -0.201 1.201 7 C -0.438 4.438 8 H 0.077 0.923 9 N -0.348 5.348 10 C -0.023 4.023 11 C -0.145 4.145 12 C -0.132 4.132 13 H 0.075 0.925 14 C 0.015 3.985 15 N -0.338 5.338 16 C 0.376 3.624 17 O -0.472 6.472 18 C -0.281 4.281 19 C -0.009 4.009 20 N -0.163 5.163 21 H 0.283 0.717 22 C -0.032 4.032 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.158 4.158 26 C -0.120 4.120 27 C -0.099 4.099 28 C -0.023 4.023 29 C -0.161 4.161 30 C 0.050 3.950 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.242 0.758 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.159 0.841 43 H 0.123 0.877 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.060 0.940 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.098 -21.021 2.411 25.426 hybrid contribution -0.751 -1.209 -0.138 1.430 sum 13.347 -22.230 2.273 26.029 Atomic orbital electron populations 1.71003 1.07486 1.28439 1.52470 1.26683 0.96017 1.03968 1.00213 0.83533 0.73754 0.73644 0.77327 1.20356 1.23758 1.20071 1.19877 0.92999 0.97708 1.33249 0.92293 1.44645 1.19222 1.09633 1.61285 1.22199 0.93900 0.92023 0.94147 1.22408 0.96227 0.93738 1.02139 1.22448 0.97448 0.95331 0.98023 0.92463 1.21589 0.94348 0.79201 1.03380 1.48254 1.44315 1.08692 1.32561 1.17671 0.79226 0.84474 0.81066 1.90707 1.40524 1.85063 1.30869 1.20016 1.18501 0.93516 0.96054 1.23166 0.94052 0.84215 0.99456 1.41607 1.54974 1.09912 1.09855 0.71750 1.18470 1.03653 0.95633 0.85435 1.20461 1.03767 0.94567 0.95244 1.21232 0.98148 0.99556 0.93433 1.21260 1.01296 0.92234 1.01052 1.20693 0.99815 0.98408 0.93071 1.19067 1.03697 0.92727 0.94393 1.22576 0.89349 0.99886 0.90479 1.21779 0.97868 0.95003 1.01498 1.20815 0.91543 0.87543 0.95125 0.94647 0.94099 0.95125 0.95946 0.88534 0.89134 0.88781 0.89369 0.75752 0.82731 0.82393 0.84145 0.87671 0.86450 0.88116 0.94020 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.70 21.65 0.30 -60.49 16 2 C -0.07 -4.39 5.43 84.86 0.46 -3.93 16 3 Si 1.09 53.96 24.68 68.60 1.69 55.65 16 4 H -0.28 -12.84 6.44 99.48 0.64 -12.20 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.27 -12.58 6.68 99.48 0.66 -11.92 16 7 C -0.31 -17.45 10.02 84.03 0.84 -16.61 16 8 H 0.06 3.48 7.42 -2.91 -0.02 3.46 16 9 N -0.62 -29.45 3.29 -670.44 -2.21 -31.65 16 10 C 0.10 4.30 4.88 86.85 0.42 4.72 16 11 C -0.11 -3.31 6.54 31.63 0.21 -3.10 16 12 C -0.11 -3.62 2.79 -10.08 -0.03 -3.65 16 13 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 14 C 0.14 3.71 6.03 85.81 0.52 4.22 16 15 N -0.61 -16.24 3.01 -821.28 -2.47 -18.72 16 16 C 0.58 17.95 7.62 86.52 0.66 18.60 16 17 O -0.59 -22.42 15.87 -4.25 -0.07 -22.49 16 18 C -0.27 -6.90 5.90 -19.01 -0.11 -7.01 16 19 C 0.13 1.96 9.51 83.70 0.80 2.76 16 20 N -0.56 -7.07 5.99 -187.08 -1.12 -8.19 16 21 H 0.44 1.88 8.96 -92.71 -0.83 1.05 16 22 C 0.07 1.39 7.26 38.92 0.28 1.67 16 23 C -0.12 -1.74 10.07 22.37 0.23 -1.51 16 24 C -0.10 -1.55 10.01 22.28 0.22 -1.32 16 25 C -0.14 -2.73 10.03 22.28 0.22 -2.50 16 26 C -0.10 -2.70 9.94 22.41 0.22 -2.47 16 27 C -0.09 -2.49 6.28 -20.08 -0.13 -2.61 16 28 C 0.10 2.17 4.89 86.68 0.42 2.59 16 29 C -0.12 -3.92 5.47 30.43 0.17 -3.75 16 30 C 0.16 5.74 2.58 45.42 0.12 5.85 16 31 H 0.04 1.25 7.96 -2.39 -0.02 1.23 16 32 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 33 H 0.03 1.32 4.67 -2.38 -0.01 1.31 16 34 H 0.02 1.04 7.10 -2.39 -0.02 1.02 16 35 H 0.10 2.49 8.12 -2.39 -0.02 2.47 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.09 2.13 8.12 -2.39 -0.02 2.11 16 38 H 0.09 2.56 6.97 -2.39 -0.02 2.54 16 39 H 0.23 1.89 5.48 -2.91 -0.02 1.87 16 40 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.11 3.19 7.72 -2.91 -0.02 3.17 16 44 H 0.12 2.04 3.81 -2.39 -0.01 2.03 16 45 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 46 H 0.04 1.54 8.11 -2.39 -0.02 1.52 16 47 H 0.07 2.33 7.62 -2.38 -0.02 2.31 16 Total: -1.00 -82.83 361.31 1.68 -81.15 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.03 Total: 12.79 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.52 Total: -8.06 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.50 Total: -119.05 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 1.69 Total: 55.65 kcal Total: -82.83 1.68 -81.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.113 kcal (2) G-P(sol) polarization free energy of solvation -82.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds