Wall clock time and date at job start Tue Mar 31 2020 23:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00427 * 2 1 4 4 H 1.48492 * 109.47203 * 274.98266 * 3 2 1 5 5 H 1.48502 * 109.46845 * 34.98508 * 3 2 1 6 6 H 1.48505 * 109.47188 * 154.98138 * 3 2 1 7 7 C 1.38816 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 186.15148 * 7 2 1 9 9 N 1.36942 * 119.99925 * 6.15451 * 7 2 1 10 10 C 1.48156 * 126.40389 * 352.79923 * 9 7 2 11 11 C 1.55291 * 107.21340 * 184.85292 * 10 9 7 12 12 C 1.54258 * 101.60489 * 22.54169 * 11 10 9 13 13 H 1.09004 * 111.33467 * 78.93336 * 12 11 10 14 14 C 1.52242 * 114.71037 * 207.19563 * 12 11 10 15 15 N 1.47713 * 106.35866 * 169.60229 * 14 12 11 16 16 C 1.34776 * 119.68524 * 127.96519 * 15 14 12 17 17 O 1.21669 * 120.00345 * 355.03809 * 16 15 14 18 18 C 1.46913 * 120.00301 * 175.04054 * 16 15 14 19 19 C 1.36370 * 126.76795 * 318.38708 * 18 16 15 20 20 N 1.35475 * 109.76833 * 179.97438 * 19 18 16 21 21 H 0.97005 * 124.78189 * 180.02562 * 20 19 18 22 22 C 1.37962 * 110.42837 * 359.97438 * 20 19 18 23 23 C 1.39119 * 133.18699 * 180.02562 * 22 20 19 24 24 C 1.37762 * 119.92758 * 180.02562 * 23 22 20 25 25 C 1.38756 * 120.63552 * 359.97353 * 24 23 22 26 26 C 1.37755 * 120.29972 * 0.04824 * 25 24 23 27 27 C 1.39278 * 119.67272 * 359.64809 * 26 25 24 28 28 C 1.46603 * 120.62935 * 307.93809 * 15 14 12 29 29 C 1.53951 * 110.58094 * 47.82516 * 28 15 14 30 30 C 1.45477 * 126.40410 * 172.83607 * 9 7 2 31 31 H 1.09000 * 109.27170 * 266.18452 * 30 9 7 32 32 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 33 33 H 1.09009 * 109.91629 * 304.29819 * 10 9 7 34 34 H 1.08999 * 109.92634 * 65.39963 * 10 9 7 35 35 H 1.08999 * 110.96108 * 140.72003 * 11 10 9 36 36 H 1.09001 * 110.95397 * 264.45316 * 11 10 9 37 37 H 1.08999 * 110.06955 * 288.81505 * 14 12 11 38 38 H 1.08995 * 110.06907 * 50.38829 * 14 12 11 39 39 H 1.08005 * 125.11708 * 359.97438 * 19 18 16 40 40 H 1.07995 * 120.03233 * 359.97438 * 23 22 20 41 41 H 1.07996 * 119.68097 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.84580 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.15979 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.25298 * 168.10943 * 28 15 14 45 45 H 1.08999 * 109.25513 * 287.57894 * 28 15 14 46 46 H 1.09000 * 109.88214 * 189.48457 * 29 28 15 47 47 H 1.09000 * 109.87793 * 68.41139 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5966 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0855 -1.2050 0.0997 9 7 1.3313 -2.3846 -0.1282 10 6 -0.1400 -2.5586 -0.1247 11 6 -0.4224 -4.0849 -0.1728 12 6 0.8971 -4.6621 0.3797 13 1 0.9368 -4.5907 1.4667 14 6 1.2317 -6.0650 -0.1081 15 7 2.6215 -6.3321 0.3150 16 6 2.9058 -7.4569 1.0010 17 8 2.0082 -8.2016 1.3474 18 6 4.2997 -7.7839 1.3305 19 6 5.3845 -7.6483 0.5154 20 7 6.5012 -8.0511 1.1680 21 1 7.3949 -8.0460 0.7908 22 6 6.1884 -8.4685 2.4452 23 6 6.9505 -8.9637 3.4985 24 6 6.3416 -9.3054 4.6861 25 6 4.9709 -9.1604 4.8454 26 6 4.1992 -8.6722 3.8140 27 6 4.8024 -8.3168 2.6100 28 6 3.6945 -5.3858 -0.0045 29 6 3.2714 -3.9483 0.3488 30 6 1.9201 -3.7049 -0.2919 31 1 1.9871 -3.9397 -1.3542 32 1 -0.4850 0.8401 0.0004 33 1 -0.5623 -2.1313 0.7848 34 1 -0.5735 -2.0730 -0.9990 35 1 -1.2640 -4.3461 0.4687 36 1 -0.5963 -4.4171 -1.1963 37 1 0.5564 -6.7899 0.3463 38 1 1.1559 -6.1112 -1.1944 39 1 5.3575 -7.2758 -0.4981 40 1 8.0180 -9.0809 3.3849 41 1 6.9371 -9.6891 5.5013 42 1 4.5069 -9.4318 5.7821 43 1 3.1324 -8.5606 3.9402 44 1 4.5864 -5.6481 0.5646 45 1 3.9184 -5.4425 -1.0698 46 1 4.0009 -3.2400 -0.0440 47 1 3.1938 -3.8401 1.4306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036764593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:00 Heat of formation + Delta-G solvation = 61.507949 kcal Electronic energy + Delta-G solvation = -29494.007085 eV Core-core repulsion = 25642.906498 eV Total energy + Delta-G solvation = -3851.100587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68282 -39.86231 -38.00610 -37.12787 -35.26557 -32.82276 -32.11806 -31.51362 -30.01085 -29.68239 -28.93946 -27.82666 -25.05259 -23.97646 -23.18892 -22.38152 -21.90219 -21.86147 -20.06167 -19.62051 -18.87740 -17.90438 -16.86537 -16.58159 -16.07168 -15.85992 -15.43652 -15.00043 -14.96924 -14.51034 -14.34135 -14.18771 -13.94248 -13.84562 -13.54453 -13.12472 -12.87795 -12.81967 -12.46586 -12.38722 -11.90835 -11.85371 -11.61073 -11.48252 -11.35236 -11.16023 -10.82043 -10.79093 -10.69052 -10.14035 -10.10207 -9.90773 -9.87520 -9.64597 -9.59760 -9.42015 -8.60031 -8.49825 -8.43503 -7.91784 -6.81371 -5.72729 -3.04839 0.83990 1.38550 1.99126 2.73933 3.00485 3.34654 3.39156 3.43989 3.46434 3.76937 4.46309 4.48881 4.55016 4.62952 4.90730 4.99207 5.06340 5.12483 5.18607 5.31594 5.34908 5.38827 5.48575 5.50725 5.56251 5.60898 5.64882 5.84442 5.87927 5.92791 6.07344 6.18565 6.20550 6.22331 6.26766 6.32322 6.38418 6.43688 6.48010 6.57465 6.65061 6.67851 6.88413 6.89596 7.10196 7.13855 7.56999 7.59011 7.63580 7.81575 8.25074 8.37774 9.19510 9.83367 10.52539 11.40534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002868 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.407659 B = 9760.655768 C =10517.004646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.128 3.872 15 N -0.603 5.603 16 C 0.587 3.413 17 O -0.545 6.545 18 C -0.215 4.215 19 C 0.100 3.900 20 N -0.582 5.582 21 H 0.419 0.581 22 C 0.087 3.913 23 C -0.128 4.128 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.064 4.064 27 C -0.065 4.065 28 C 0.106 3.894 29 C -0.130 4.130 30 C 0.168 3.832 31 H 0.020 0.980 32 H 0.252 0.748 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.181 0.819 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.533 -18.356 2.648 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.336 5.336 16 C 0.376 3.624 17 O -0.424 6.424 18 C -0.226 4.226 19 C -0.031 4.031 20 N -0.183 5.183 21 H 0.257 0.743 22 C -0.018 4.018 23 C -0.149 4.149 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.082 4.082 27 C -0.070 4.070 28 C -0.017 4.017 29 C -0.169 4.169 30 C 0.059 3.941 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.198 0.802 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.105 -18.468 2.769 22.814 hybrid contribution 0.952 1.133 -0.285 1.507 sum 14.057 -17.335 2.484 22.456 Atomic orbital electron populations 1.69958 1.04924 1.25035 1.56704 1.24816 0.95657 0.97618 1.02256 0.86158 0.78681 0.83836 0.77457 1.21672 1.21811 1.20684 1.18991 0.90861 0.82421 1.43192 0.90432 1.44206 1.01627 1.00590 1.85477 1.21516 0.84013 0.88200 1.01016 1.22799 0.95687 0.99362 0.99611 1.22730 0.97650 0.93444 1.00615 0.90208 1.21600 0.81326 0.97349 0.99071 1.48178 1.09553 1.20338 1.55496 1.17338 0.87103 0.80796 0.77170 1.90760 1.47746 1.50231 1.53634 1.20030 0.93089 1.13973 0.95533 1.22126 0.84579 0.98222 0.98187 1.41507 1.09589 1.55903 1.11319 0.74326 1.18231 0.94328 1.02911 0.86373 1.19995 0.98855 1.04035 0.92013 1.20811 0.94868 0.99855 0.96428 1.20958 0.93784 1.02344 0.99017 1.20632 1.00232 0.96331 0.91016 1.18748 0.91657 1.02705 0.93886 1.21967 0.89826 0.89772 1.00137 1.21891 0.99375 0.93817 1.01806 1.20621 0.91089 0.86866 0.95484 0.96320 0.93765 0.93427 0.93936 0.92031 0.92292 0.89148 0.91330 0.80224 0.86157 0.85652 0.85745 0.85431 0.89852 0.91924 0.90648 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.49 55.49 0.58 -26.28 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.13 9.89 -15.06 -0.15 -6.28 16 8 H 0.08 2.01 7.18 -52.49 -0.38 1.63 16 9 N -0.59 -14.76 3.35 -163.08 -0.55 -15.31 16 10 C 0.18 4.26 5.43 -1.92 -0.01 4.25 16 11 C -0.14 -2.53 6.57 -24.86 -0.16 -2.69 16 12 C -0.12 -2.23 2.87 -89.09 -0.26 -2.49 16 13 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 14 C 0.13 1.99 5.97 -3.76 -0.02 1.97 16 15 N -0.60 -8.91 3.00 -173.95 -0.52 -9.43 16 16 C 0.59 9.28 7.57 -12.75 -0.10 9.19 16 17 O -0.55 -10.35 16.47 5.22 0.09 -10.27 16 18 C -0.22 -2.86 5.26 -103.31 -0.54 -3.40 16 19 C 0.10 0.94 9.47 -16.62 -0.16 0.78 16 20 N -0.58 -4.64 5.99 -10.48 -0.06 -4.70 16 21 H 0.42 1.80 8.96 -40.82 -0.37 1.44 16 22 C 0.09 0.92 7.26 -83.97 -0.61 0.31 16 23 C -0.13 -1.15 10.07 -39.43 -0.40 -1.55 16 24 C -0.10 -0.89 10.01 -39.56 -0.40 -1.29 16 25 C -0.14 -1.46 10.03 -39.57 -0.40 -1.86 16 26 C -0.06 -0.82 10.09 -39.37 -0.40 -1.22 16 27 C -0.07 -0.87 6.36 -104.95 -0.67 -1.54 16 28 C 0.11 1.38 5.19 -3.49 -0.02 1.36 16 29 C -0.13 -2.18 5.45 -26.98 -0.15 -2.33 16 30 C 0.17 3.31 2.57 -67.97 -0.17 3.14 16 31 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 1.28 7.46 -51.92 -0.39 0.89 16 34 H 0.04 1.12 7.57 -51.93 -0.39 0.73 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.09 1.46 6.98 -51.93 -0.36 1.09 16 38 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.18 1.14 7.33 -52.48 -0.38 0.75 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 44 H 0.08 0.95 5.01 -51.93 -0.26 0.69 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.27 7.63 -51.93 -0.40 0.87 16 47 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -34.17 371.03 -11.29 -45.46 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.69 Total: 2.06 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -4.70 Total: -3.94 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.55 Total: -55.73 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.17 -11.29 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.971 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds