Wall clock time and date at job start Tue Mar 31 2020 23:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48498 * 109.46938 * 274.93470 * 3 2 1 5 5 H 1.48502 * 109.47289 * 34.93350 * 3 2 1 6 6 H 1.48501 * 109.47032 * 154.93521 * 3 2 1 7 7 C 1.38814 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 170.80125 * 7 2 1 9 9 N 1.36938 * 119.99662 * 350.80360 * 7 2 1 10 10 C 1.47819 * 125.94250 * 350.19527 * 9 7 2 11 11 C 1.55098 * 104.88931 * 201.58986 * 10 9 7 12 12 C 1.56116 * 101.12095 * 322.99481 * 11 10 9 13 13 H 1.09004 * 112.18929 * 157.72272 * 12 11 10 14 14 C 1.53112 * 106.64360 * 281.13789 * 12 11 10 15 15 N 1.45045 * 110.00781 * 158.89823 * 14 12 11 16 16 C 1.34775 * 120.58778 * 121.71411 * 15 14 12 17 17 O 1.21671 * 120.00828 * 355.49067 * 16 15 14 18 18 C 1.46911 * 119.99806 * 175.49053 * 16 15 14 19 19 C 1.36377 * 126.76786 * 319.18218 * 18 16 15 20 20 N 1.35479 * 109.76964 * 179.86094 * 19 18 16 21 21 H 0.96998 * 124.78996 * 180.18229 * 20 19 18 22 22 C 1.37963 * 110.42353 * 0.41925 * 20 19 18 23 23 C 1.39124 * 133.18717 * 179.75481 * 22 20 19 24 24 C 1.37767 * 119.92886 * 179.97438 * 23 22 20 25 25 C 1.38759 * 120.63353 * 359.97438 * 24 23 22 26 26 C 1.37746 * 120.30128 * 359.97438 * 25 24 23 27 27 C 1.39277 * 119.67404 * 359.97438 * 26 25 24 28 28 C 1.46525 * 118.43097 * 302.25664 * 15 14 12 29 29 C 1.51790 * 110.13146 * 53.20369 * 28 15 14 30 30 C 1.46251 * 125.96134 * 170.28905 * 9 7 2 31 31 H 1.08999 * 105.50383 * 70.56028 * 30 9 7 32 32 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.33402 * 82.75333 * 10 9 7 34 34 H 1.08996 * 110.39592 * 320.45650 * 10 9 7 35 35 H 1.09000 * 111.09861 * 205.02230 * 11 10 9 36 36 H 1.09004 * 111.10046 * 80.96808 * 11 10 9 37 37 H 1.09004 * 109.52350 * 279.95385 * 14 12 11 38 38 H 1.08995 * 109.52917 * 40.16446 * 14 12 11 39 39 H 1.07998 * 125.11458 * 359.97438 * 19 18 16 40 40 H 1.07999 * 120.03540 * 359.96798 * 23 22 20 41 41 H 1.07995 * 119.67908 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.84544 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.16412 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.36285 * 292.99729 * 28 15 14 45 45 H 1.09004 * 109.35734 * 173.40255 * 28 15 14 46 46 H 1.08996 * 108.36279 * 196.93693 * 29 28 15 47 47 H 1.08998 * 108.22928 * 79.72542 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3933 2.1066 -1.3949 5 1 1.5036 2.6204 0.8017 6 1 3.5960 1.4124 0.5931 7 6 2.0103 -1.2021 0.0005 8 1 3.0798 -1.2082 -0.1490 9 7 1.3387 -2.3803 0.1906 10 6 -0.0732 -2.5170 0.6062 11 6 -0.1768 -3.9452 1.2021 12 6 0.7773 -4.7371 0.2536 13 1 1.1473 -5.6536 0.7134 14 6 -0.0078 -5.0069 -1.0329 15 7 0.9072 -5.2780 -2.1251 16 6 0.8413 -6.4414 -2.8023 17 8 0.0649 -7.3086 -2.4479 18 6 1.7070 -6.6626 -3.9685 19 6 2.0133 -5.7571 -4.9412 20 7 2.8425 -6.3240 -5.8503 21 1 3.1981 -5.8730 -6.6320 22 6 3.1055 -7.6350 -5.5103 23 6 3.8741 -8.6350 -6.0974 24 6 3.9473 -9.8794 -5.5107 25 6 3.2608 -10.1484 -4.3353 26 6 2.4954 -9.1711 -3.7382 27 6 2.4133 -7.9082 -4.3199 28 6 1.9089 -4.2638 -2.4641 29 6 2.7022 -3.8795 -1.2283 30 6 1.8939 -3.7225 0.0197 31 1 2.5915 -3.8567 0.8465 32 1 -0.4850 0.8400 -0.0004 33 1 -0.7330 -2.4170 -0.2556 34 1 -0.3205 -1.7719 1.3623 35 1 -1.1969 -4.3240 1.1380 36 1 0.1840 -3.9685 2.2304 37 1 -0.6723 -5.8578 -0.8825 38 1 -0.5950 -4.1262 -1.2928 39 1 1.6509 -4.7405 -4.9799 40 1 4.4127 -8.4361 -7.0122 41 1 4.5455 -10.6526 -5.9697 42 1 3.3276 -11.1282 -3.8860 43 1 1.9623 -9.3827 -2.8231 44 1 1.4088 -3.3806 -2.8616 45 1 2.5866 -4.6632 -3.2187 46 1 3.2129 -2.9374 -1.4274 47 1 3.4562 -4.6472 -1.0548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036764594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:05 Heat of formation + Delta-G solvation = 60.972908 kcal Electronic energy + Delta-G solvation = -29838.142243 eV Core-core repulsion = 25987.018456 eV Total energy + Delta-G solvation = -3851.123788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61515 -39.87254 -37.98724 -37.07860 -35.08405 -32.89284 -32.08863 -31.74223 -29.79074 -29.60447 -28.91305 -27.53814 -25.42817 -24.16887 -23.15014 -22.60649 -22.03150 -21.85100 -20.14730 -19.31384 -18.41774 -17.63489 -16.78890 -16.51901 -16.09274 -15.83574 -15.44845 -15.05138 -14.90368 -14.45707 -14.30135 -14.17955 -13.93367 -13.91091 -13.51909 -13.11623 -12.82314 -12.54753 -12.51863 -12.07660 -11.89787 -11.78599 -11.67595 -11.33837 -11.25579 -11.12120 -10.95353 -10.75091 -10.50154 -10.17445 -10.06753 -9.90234 -9.86169 -9.66804 -9.63345 -9.51485 -8.59903 -8.44259 -8.17727 -7.84224 -6.78613 -5.77486 -3.09137 0.89257 1.42721 2.06192 2.81581 3.15392 3.35304 3.42512 3.43934 3.51166 3.82398 4.45891 4.53121 4.63256 4.73888 4.94294 5.05207 5.19609 5.22755 5.31559 5.32484 5.39525 5.48620 5.53702 5.56329 5.58675 5.59342 5.80320 5.89233 5.91791 5.99314 6.15685 6.25514 6.30476 6.35223 6.38044 6.38670 6.46273 6.48199 6.52846 6.62867 6.71981 6.85712 6.94085 6.98238 7.03753 7.20985 7.51155 7.57566 7.76253 7.79697 8.23966 8.50911 9.16604 9.80013 10.49939 11.35524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.003047 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.204785 B = 9188.221088 C =10097.185884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.105 4.105 13 H 0.076 0.924 14 C 0.121 3.879 15 N -0.595 5.595 16 C 0.588 3.412 17 O -0.549 6.549 18 C -0.215 4.215 19 C 0.102 3.898 20 N -0.582 5.582 21 H 0.419 0.581 22 C 0.087 3.913 23 C -0.128 4.128 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.064 4.064 27 C -0.065 4.065 28 C 0.111 3.889 29 C -0.134 4.134 30 C 0.172 3.828 31 H 0.008 0.992 32 H 0.252 0.748 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.182 0.818 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -14.933 -11.458 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.183 4.183 12 C -0.125 4.125 13 H 0.095 0.905 14 C -0.002 4.002 15 N -0.325 5.325 16 C 0.377 3.623 17 O -0.428 6.428 18 C -0.225 4.225 19 C -0.029 4.029 20 N -0.183 5.183 21 H 0.257 0.743 22 C -0.019 4.019 23 C -0.149 4.149 24 C -0.121 4.121 25 C -0.162 4.162 26 C -0.082 4.082 27 C -0.069 4.069 28 C -0.011 4.011 29 C -0.174 4.174 30 C 0.064 3.936 31 H 0.026 0.974 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.199 0.801 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.860 -15.060 -11.356 19.751 hybrid contribution 0.724 1.395 -0.431 1.629 sum 6.584 -13.665 -11.787 19.210 Atomic orbital electron populations 1.69949 1.04923 1.25125 1.56238 1.24796 0.95552 0.97654 1.02206 0.86190 0.78824 0.83838 0.77422 1.21748 1.21684 1.20650 1.18904 0.90901 0.82618 1.42938 0.90720 1.44538 1.09251 0.99326 1.78649 1.21482 0.85769 0.90645 0.97252 1.23279 0.97796 0.98895 0.98306 1.22290 0.96876 0.97658 0.95673 0.90541 1.21359 0.91614 1.01803 0.85426 1.47436 1.34495 1.17021 1.33590 1.17270 0.81873 0.81308 0.81889 1.90748 1.39868 1.43123 1.69063 1.20025 1.08486 0.94159 0.99873 1.22199 0.92891 0.98265 0.89572 1.41525 1.42136 1.10114 1.24568 0.74322 1.18241 1.01456 0.85354 0.96832 1.19995 1.01589 0.92167 1.01132 1.20796 0.99635 0.95728 0.95939 1.20938 0.99209 0.99345 0.96745 1.20618 0.97214 0.90861 0.99531 1.18751 0.99429 0.93595 0.95160 1.21505 0.90647 0.90849 0.98121 1.21227 0.98613 1.01694 0.95882 1.19476 0.93318 0.86665 0.94107 0.97399 0.93745 0.95271 0.91827 0.91893 0.92026 0.89600 0.90691 0.80071 0.86194 0.85719 0.85824 0.85460 0.91116 0.90359 0.89931 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.72 55.49 0.59 -25.25 16 2 C -0.01 -0.14 5.42 -17.43 -0.09 -0.23 16 3 Si 0.91 21.28 29.56 -169.99 -5.03 16.26 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -5.90 9.37 -15.06 -0.14 -6.04 16 8 H 0.08 1.90 7.34 -52.49 -0.39 1.52 16 9 N -0.59 -14.20 3.30 -165.66 -0.55 -14.75 16 10 C 0.17 4.01 4.95 -2.21 -0.01 4.00 16 11 C -0.14 -2.66 6.46 -23.95 -0.15 -2.82 16 12 C -0.11 -1.89 3.72 -89.06 -0.33 -2.22 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.12 2.12 5.42 -4.76 -0.03 2.09 16 15 N -0.59 -9.86 2.93 -176.93 -0.52 -10.38 16 16 C 0.59 10.02 7.59 -12.75 -0.10 9.92 16 17 O -0.55 -10.95 16.50 5.21 0.09 -10.86 16 18 C -0.21 -3.09 5.38 -103.31 -0.56 -3.64 16 19 C 0.10 1.10 9.46 -16.61 -0.16 0.95 16 20 N -0.58 -5.25 5.99 -10.48 -0.06 -5.31 16 21 H 0.42 2.25 8.96 -40.82 -0.37 1.89 16 22 C 0.09 0.97 7.26 -83.97 -0.61 0.37 16 23 C -0.13 -1.20 10.07 -39.42 -0.40 -1.60 16 24 C -0.10 -0.93 10.01 -39.56 -0.40 -1.32 16 25 C -0.14 -1.49 10.03 -39.57 -0.40 -1.89 16 26 C -0.06 -0.84 10.09 -39.38 -0.40 -1.23 16 27 C -0.06 -0.90 6.36 -104.95 -0.67 -1.57 16 28 C 0.11 1.72 5.55 -4.64 -0.03 1.70 16 29 C -0.13 -2.35 5.59 -29.06 -0.16 -2.52 16 30 C 0.17 3.45 2.66 -69.95 -0.19 3.26 16 31 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.03 0.73 6.97 -51.93 -0.36 0.37 16 34 H 0.06 1.66 7.10 -51.93 -0.37 1.29 16 35 H 0.06 1.04 7.98 -51.93 -0.41 0.62 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.51 6.97 -51.93 -0.36 1.15 16 38 H 0.07 1.42 6.49 -51.93 -0.34 1.08 16 39 H 0.18 1.56 7.27 -52.49 -0.38 1.18 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.02 4.77 -51.93 -0.25 0.77 16 46 H 0.08 1.55 6.77 -51.93 -0.35 1.19 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -32.54 367.51 -11.25 -43.79 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.51 Total: 3.74 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.81 Total: -2.79 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.53 Total: -55.68 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -11.25 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.761 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds