Wall clock time and date at job start Tue Mar 31 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99938 * 2 1 4 4 H 1.48498 * 109.47091 * 274.96620 * 3 2 1 5 5 H 1.48500 * 109.47068 * 34.96551 * 3 2 1 6 6 H 1.48501 * 109.46898 * 154.96341 * 3 2 1 7 7 C 1.38813 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99605 * 170.45445 * 7 2 1 9 9 N 1.36941 * 119.99832 * 350.45163 * 7 2 1 10 10 C 1.47776 * 125.96661 * 346.22199 * 9 7 2 11 11 C 1.55096 * 104.91459 * 201.61661 * 10 9 7 12 12 C 1.56111 * 101.08252 * 322.94067 * 11 10 9 13 13 H 1.09006 * 112.18675 * 157.73558 * 12 11 10 14 14 C 1.53609 * 106.55015 * 281.23364 * 12 11 10 15 15 N 1.46689 * 108.85503 * 160.21561 * 14 12 11 16 16 C 1.34781 * 120.97609 * 121.15540 * 15 14 12 17 17 O 1.21579 * 119.99798 * 4.06509 * 16 15 14 18 18 C 1.47653 * 120.00307 * 184.06812 * 16 15 14 19 19 C 1.40198 * 119.97417 * 133.97689 * 18 16 15 20 20 C 1.36323 * 120.66643 * 180.02562 * 19 18 16 21 21 C 1.39365 * 120.23792 * 359.97438 * 20 19 18 22 22 N 1.37398 * 133.24993 * 179.97438 * 21 20 19 23 23 H 0.97000 * 125.00289 * 359.77960 * 22 21 20 24 24 C 1.36858 * 109.98226 * 180.02562 * 22 21 20 25 25 C 1.34184 * 109.96084 * 0.02562 * 24 22 21 26 26 C 1.40875 * 119.64072 * 359.97438 * 21 20 19 27 27 C 1.39160 * 119.96871 * 313.95342 * 18 16 15 28 28 C 1.46530 * 118.04942 * 300.88571 * 15 14 12 29 29 C 1.51779 * 110.13502 * 54.04028 * 28 15 14 30 30 C 1.46253 * 125.96004 * 166.26368 * 9 7 2 31 31 H 1.09001 * 105.49585 * 71.44902 * 30 9 7 32 32 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.34925 * 320.47937 * 10 9 7 34 34 H 1.09000 * 110.34751 * 82.65102 * 10 9 7 35 35 H 1.09000 * 111.09975 * 80.89804 * 11 10 9 36 36 H 1.09005 * 111.09258 * 204.98891 * 11 10 9 37 37 H 1.09003 * 109.67958 * 40.39150 * 14 12 11 38 38 H 1.09004 * 109.64649 * 280.01840 * 14 12 11 39 39 H 1.07998 * 119.66973 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.88207 * 179.97438 * 20 19 18 41 41 H 1.08008 * 125.01963 * 179.97438 * 24 22 21 42 42 H 1.08007 * 126.54181 * 179.97438 * 25 24 22 43 43 H 1.07999 * 120.30278 * 0.04293 * 27 18 16 44 44 H 1.09000 * 109.36111 * 174.24611 * 28 15 14 45 45 H 1.09001 * 109.35838 * 293.83607 * 28 15 14 46 46 H 1.09004 * 108.36125 * 79.85209 * 29 28 15 47 47 H 1.09001 * 108.36019 * 196.94995 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3927 2.1070 -1.3948 5 1 1.5041 2.6201 0.8024 6 1 3.5963 1.4121 0.5925 7 6 2.0103 -1.2022 -0.0005 8 1 3.0790 -1.2085 -0.1556 9 7 1.3397 -2.3800 0.1957 10 6 -0.0433 -2.5181 0.6975 11 6 -0.1235 -3.9634 1.2543 12 6 0.7579 -4.7325 0.2205 13 1 1.1472 -5.6666 0.6257 14 6 -0.1167 -4.9513 -1.0232 15 7 0.7531 -5.2259 -2.1721 16 6 0.6418 -6.3752 -2.8673 17 8 -0.2366 -7.1695 -2.5921 18 6 1.5865 -6.6697 -3.9631 19 6 2.1775 -7.9375 -4.0567 20 6 3.0521 -8.2245 -5.0623 21 6 3.3698 -7.2569 -6.0136 22 7 4.1949 -7.2519 -7.1122 23 1 4.7315 -8.0038 -7.4084 24 6 4.1522 -6.0283 -7.7237 25 6 3.3182 -5.2133 -7.0599 26 6 2.7818 -5.9794 -5.9312 27 6 1.8891 -5.6886 -4.9025 28 6 1.7425 -4.2116 -2.5453 29 6 2.6050 -3.8574 -1.3477 30 6 1.8677 -3.7208 -0.0541 31 1 2.6049 -3.8942 0.7299 32 1 -0.4850 0.8400 -0.0004 33 1 -0.2326 -1.7951 1.4910 34 1 -0.7568 -2.3831 -0.1154 35 1 0.3038 -4.0226 2.2553 36 1 -1.1497 -4.3309 1.2453 37 1 -0.7070 -4.0561 -1.2189 38 1 -0.7820 -5.7989 -0.8590 39 1 1.9382 -8.6943 -3.3242 40 1 3.5003 -9.2053 -5.1220 41 1 4.7084 -5.7582 -8.6093 42 1 3.0858 -4.1886 -7.3099 43 1 1.4364 -4.7104 -4.8341 44 1 2.3747 -4.6000 -3.3437 45 1 1.2280 -3.3173 -2.8972 46 1 3.3640 -4.6310 -1.2304 47 1 3.1110 -2.9147 -1.5558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036804683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:52 Heat of formation + Delta-G solvation = 65.850135 kcal Electronic energy + Delta-G solvation = -29825.388692 eV Core-core repulsion = 25974.476397 eV Total energy + Delta-G solvation = -3850.912295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47706 -40.09064 -38.30393 -36.57446 -35.12086 -32.84263 -32.16331 -31.67238 -30.18297 -29.11162 -28.99863 -27.53600 -25.46690 -24.17682 -23.30303 -22.43389 -22.12134 -21.03847 -20.14036 -19.58596 -18.37787 -18.08494 -17.07435 -16.37078 -16.23085 -15.78897 -15.15995 -14.97444 -14.61139 -14.46868 -14.19446 -14.15092 -13.91654 -13.78492 -13.35098 -12.97542 -12.82697 -12.75659 -12.69483 -12.28544 -12.02772 -11.80701 -11.64089 -11.31538 -11.19770 -11.01008 -10.92136 -10.71313 -10.47614 -10.16524 -10.07662 -9.91439 -9.85522 -9.67904 -9.63306 -9.48192 -8.57296 -8.40834 -8.13706 -7.89867 -6.73227 -5.75805 -3.08911 0.91247 1.22255 2.52597 2.88155 2.95038 3.32340 3.38208 3.44931 3.46382 3.80877 4.48243 4.48801 4.59651 4.75740 4.90598 5.12353 5.19413 5.28674 5.29933 5.32739 5.40010 5.52149 5.54394 5.58612 5.61005 5.75114 5.80576 5.90160 5.94114 6.02036 6.11852 6.19625 6.28988 6.35295 6.38658 6.41141 6.46176 6.50318 6.53056 6.63712 6.71525 6.81413 6.91770 6.99354 7.06147 7.25701 7.47895 7.61708 7.77241 7.78151 8.26640 8.43643 9.18455 9.81978 10.52973 11.37344 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003416 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.797756 B = 8193.689405 C = 9779.269663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.003 4.003 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.074 0.926 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.106 4.106 13 H 0.076 0.924 14 C 0.121 3.879 15 N -0.594 5.594 16 C 0.562 3.438 17 O -0.550 6.550 18 C -0.148 4.148 19 C -0.048 4.048 20 C -0.138 4.138 21 C 0.111 3.889 22 N -0.596 5.596 23 H 0.415 0.585 24 C 0.043 3.957 25 C -0.193 4.193 26 C -0.119 4.119 27 C -0.033 4.033 28 C 0.103 3.897 29 C -0.133 4.133 30 C 0.172 3.828 31 H 0.006 0.994 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.171 0.829 42 H 0.150 0.850 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -14.507 -12.749 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.092 0.908 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.125 4.125 13 H 0.094 0.906 14 C -0.001 4.001 15 N -0.325 5.325 16 C 0.351 3.649 17 O -0.429 6.429 18 C -0.152 4.152 19 C -0.068 4.068 20 C -0.158 4.158 21 C 0.002 3.998 22 N -0.199 5.199 23 H 0.251 0.749 24 C -0.082 4.082 25 C -0.217 4.217 26 C -0.123 4.123 27 C -0.052 4.052 28 C -0.019 4.019 29 C -0.173 4.173 30 C 0.064 3.936 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.188 0.812 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.095 -14.730 -12.660 20.678 hybrid contribution 0.861 0.750 -0.233 1.165 sum 7.957 -13.981 -12.893 20.616 Atomic orbital electron populations 1.69951 1.04976 1.25199 1.55849 1.24852 0.95517 0.97741 1.01902 0.86199 0.78856 0.83801 0.77479 1.21638 1.21694 1.20612 1.18888 0.90834 0.82598 1.43273 0.90812 1.44510 1.12796 0.99618 1.74613 1.21432 0.86592 0.90235 0.96891 1.23267 0.98226 0.99001 0.97777 1.22407 0.96802 0.97811 0.95519 0.90553 1.21799 0.92276 1.02024 0.84013 1.47892 1.36391 1.17636 1.30548 1.18216 0.83928 0.81022 0.81775 1.90742 1.35253 1.47960 1.68994 1.19611 1.02098 0.95314 0.98195 1.20463 0.94232 0.95106 0.97010 1.19632 1.02578 0.98193 0.95434 1.18397 0.94814 0.96216 0.90325 1.41760 1.40255 1.13663 1.24173 0.74852 1.21814 1.02128 0.84664 0.99622 1.21788 1.02756 1.00233 0.96973 1.19110 1.01372 0.93803 0.98060 1.20853 0.94491 0.98267 0.91599 1.21746 0.91012 0.91008 0.98165 1.21199 0.98303 1.01884 0.95901 1.19478 0.93667 0.86775 0.93657 0.97610 0.93731 0.92530 0.94848 0.92009 0.91876 0.90204 0.89733 0.85014 0.85849 0.81203 0.83248 0.84685 0.89445 0.90910 0.93377 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.05 10.89 55.49 0.60 -25.44 16 2 C 0.00 -0.07 5.40 -17.43 -0.09 -0.17 16 3 Si 0.91 21.49 29.56 -169.99 -5.03 16.47 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.04 9.31 -15.06 -0.14 -6.18 16 8 H 0.07 1.91 7.49 -52.49 -0.39 1.52 16 9 N -0.59 -14.34 3.31 -165.70 -0.55 -14.89 16 10 C 0.17 4.05 4.91 -2.23 -0.01 4.03 16 11 C -0.14 -2.67 6.47 -23.96 -0.15 -2.82 16 12 C -0.11 -1.90 3.70 -88.81 -0.33 -2.23 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.12 2.16 5.56 -3.62 -0.02 2.14 16 15 N -0.59 -10.15 2.94 -175.05 -0.51 -10.67 16 16 C 0.56 9.64 7.28 -12.41 -0.09 9.55 16 17 O -0.55 -10.91 16.43 5.30 0.09 -10.82 16 18 C -0.15 -2.15 5.20 -104.98 -0.55 -2.69 16 19 C -0.05 -0.61 9.60 -39.54 -0.38 -0.99 16 20 C -0.14 -1.45 10.00 -39.85 -0.40 -1.85 16 21 C 0.11 1.20 7.27 -83.95 -0.61 0.59 16 22 N -0.60 -4.59 6.05 -10.61 -0.06 -4.66 16 23 H 0.41 1.85 8.96 -40.82 -0.37 1.48 16 24 C 0.04 0.32 11.81 -16.74 -0.20 0.12 16 25 C -0.19 -1.90 11.09 -37.65 -0.42 -2.32 16 26 C -0.12 -1.45 6.36 -105.16 -0.67 -2.12 16 27 C -0.03 -0.44 7.38 -38.86 -0.29 -0.73 16 28 C 0.10 1.69 5.28 -4.65 -0.02 1.67 16 29 C -0.13 -2.40 5.62 -29.07 -0.16 -2.56 16 30 C 0.17 3.49 2.63 -69.95 -0.18 3.31 16 31 H 0.01 0.13 8.06 -51.93 -0.42 -0.28 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.06 1.47 7.39 -51.93 -0.38 1.09 16 34 H 0.03 0.85 6.86 -51.93 -0.36 0.49 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.04 7.98 -51.93 -0.41 0.63 16 37 H 0.08 1.55 6.50 -51.93 -0.34 1.22 16 38 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.14 1.74 6.58 -52.49 -0.35 1.40 16 44 H 0.09 1.26 4.20 -51.93 -0.22 1.04 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.08 1.61 6.89 -51.93 -0.36 1.25 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.60 366.42 -11.13 -43.73 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.47 Total: 4.00 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -4.72 Total: -3.24 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.52 Total: -55.66 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.60 -11.13 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036804683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.577 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds