Wall clock time and date at job start Tue Mar 31 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48497 * 109.46642 * 274.98760 * 3 2 1 5 5 H 1.48492 * 109.47029 * 34.98537 * 3 2 1 6 6 H 1.48499 * 109.47221 * 154.98788 * 3 2 1 7 7 C 1.38813 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00142 * 172.57174 * 7 2 1 9 9 N 1.36930 * 120.00055 * 352.57085 * 7 2 1 10 10 C 1.47433 * 126.05718 * 353.63202 * 9 7 2 11 11 C 1.54505 * 107.14953 * 181.59755 * 10 9 7 12 12 C 1.56012 * 102.62178 * 22.82941 * 11 10 9 13 13 H 1.09005 * 112.89479 * 202.90489 * 12 11 10 14 14 C 1.53210 * 106.36170 * 78.29627 * 12 11 10 15 15 N 1.46536 * 110.25261 * 202.96836 * 14 12 11 16 16 C 1.34783 * 121.01427 * 235.57000 * 15 14 12 17 17 O 1.21576 * 119.99949 * 5.97190 * 16 15 14 18 18 C 1.47647 * 119.99749 * 185.96966 * 16 15 14 19 19 C 1.40210 * 119.97758 * 29.79572 * 18 16 15 20 20 C 1.36311 * 120.66853 * 179.75329 * 19 18 16 21 21 C 1.39363 * 120.23974 * 0.52127 * 20 19 18 22 22 N 1.37396 * 133.24979 * 179.76523 * 21 20 19 23 23 H 0.97005 * 125.01127 * 359.97438 * 22 21 20 24 24 C 1.36866 * 109.98454 * 179.97438 * 22 21 20 25 25 C 1.34199 * 109.95630 * 359.97438 * 24 22 21 26 26 C 1.40874 * 119.64123 * 359.73582 * 21 20 19 27 27 C 1.39150 * 119.97242 * 210.06716 * 18 16 15 28 28 C 1.47137 * 117.97334 * 55.49272 * 15 14 12 29 29 C 1.53050 * 107.73762 * 302.66971 * 28 15 14 30 30 C 1.46470 * 126.05649 * 173.63293 * 9 7 2 31 31 H 1.08994 * 108.34355 * 269.14606 * 30 9 7 32 32 H 0.96998 * 119.99710 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.90508 * 300.97755 * 10 9 7 34 34 H 1.08998 * 109.89808 * 62.03801 * 10 9 7 35 35 H 1.09003 * 110.77695 * 141.11636 * 11 10 9 36 36 H 1.09005 * 110.77818 * 264.35698 * 11 10 9 37 37 H 1.09000 * 109.34649 * 323.15328 * 14 12 11 38 38 H 1.08996 * 109.34919 * 82.70719 * 14 12 11 39 39 H 1.08006 * 119.65989 * 0.02562 * 19 18 16 40 40 H 1.08005 * 119.87776 * 180.23555 * 20 19 18 41 41 H 1.07995 * 125.02136 * 180.02562 * 24 22 21 42 42 H 1.07992 * 126.53729 * 179.97438 * 25 24 22 43 43 H 1.08004 * 120.30228 * 0.02562 * 27 18 16 44 44 H 1.09000 * 109.81976 * 183.09582 * 28 15 14 45 45 H 1.09001 * 109.81751 * 62.24651 * 28 15 14 46 46 H 1.08999 * 109.15052 * 174.78781 * 29 28 15 47 47 H 1.09002 * 109.15256 * 293.94639 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0835 -1.2062 -0.1204 9 7 1.3342 -2.3830 0.1544 10 6 -0.1010 -2.5279 0.4593 11 6 -0.3913 -4.0409 0.5767 12 6 1.0133 -4.6327 0.9096 13 1 1.1027 -5.6867 0.6463 14 6 1.2537 -4.3624 2.3984 15 7 2.6898 -4.3685 2.6897 16 6 3.2037 -5.1831 3.6326 17 8 2.4931 -6.0038 4.1798 18 6 4.6297 -5.0787 4.0007 19 6 5.2905 -3.8460 3.9013 20 6 6.6054 -3.7325 4.2422 21 6 7.3144 -4.8475 4.6852 22 7 8.6150 -5.0384 5.0848 23 1 9.2945 -4.3469 5.1171 24 6 8.8107 -6.3481 5.4308 25 6 7.6710 -7.0388 5.2727 26 6 6.6633 -6.0929 4.7844 27 6 5.3184 -6.2049 4.4406 28 6 3.5539 -3.4595 1.9203 29 6 3.3676 -3.7838 0.4362 30 6 1.9087 -3.7259 0.0452 31 1 1.8154 -4.0558 -0.9894 32 1 -0.4849 0.8401 0.0004 33 1 -0.3321 -2.0315 1.4018 34 1 -0.6965 -2.0943 -0.3440 35 1 -1.0955 -4.2379 1.3850 36 1 -0.7672 -4.4368 -0.3668 37 1 0.8371 -3.3899 2.6607 38 1 0.7619 -5.1349 2.9897 39 1 4.7509 -2.9767 3.5553 40 1 7.1008 -2.7759 4.1644 41 1 9.7440 -6.7640 5.7803 42 1 7.5246 -8.0909 5.4670 43 1 4.8147 -7.1575 4.5142 44 1 4.5954 -3.6114 2.2038 45 1 3.2660 -2.4257 2.1116 46 1 3.9265 -3.0628 -0.1602 47 1 3.7514 -4.7845 0.2379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036804686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:05 Heat of formation + Delta-G solvation = 75.159082 kcal Electronic energy + Delta-G solvation = -29932.562500 eV Core-core repulsion = 26082.053871 eV Total energy + Delta-G solvation = -3850.508629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47139 -40.12641 -38.30090 -36.61810 -34.97548 -32.80213 -32.15597 -31.58015 -30.16154 -29.14571 -28.99154 -27.40607 -25.47286 -24.25299 -23.11999 -22.65922 -21.91421 -21.03332 -20.05399 -19.61060 -18.41642 -18.08272 -17.24610 -16.46095 -15.97368 -15.59065 -15.22690 -14.94706 -14.54031 -14.50632 -14.19088 -14.05972 -13.91667 -13.70360 -13.36480 -13.16073 -12.90879 -12.78549 -12.58463 -12.15690 -12.08794 -11.73411 -11.50034 -11.27046 -11.07542 -11.01293 -10.91022 -10.72893 -10.58227 -10.15200 -10.05977 -9.90533 -9.88822 -9.59793 -9.58948 -9.42930 -8.61443 -8.36464 -8.10901 -7.90617 -6.79959 -5.71864 -3.05765 0.94775 1.17325 2.50978 2.88244 3.05120 3.36692 3.37390 3.42049 3.45036 3.90356 4.47562 4.52422 4.61687 4.76178 4.90160 5.12393 5.21615 5.25260 5.32223 5.38078 5.41869 5.50877 5.57626 5.63381 5.66110 5.74859 5.82092 5.92923 5.94596 6.05906 6.14945 6.22590 6.32155 6.33605 6.36150 6.38694 6.44594 6.47878 6.53227 6.58399 6.75902 6.82086 6.91968 6.94584 7.00657 7.25579 7.49425 7.66495 7.81544 7.84329 8.25538 8.49889 9.19349 9.82733 10.51270 11.39273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003396 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.091702 B = 8242.365844 C = 9686.169526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.141 4.141 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.128 3.872 15 N -0.594 5.594 16 C 0.561 3.439 17 O -0.554 6.554 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.139 4.139 21 C 0.113 3.887 22 N -0.595 5.595 23 H 0.416 0.584 24 C 0.042 3.958 25 C -0.194 4.194 26 C -0.123 4.123 27 C -0.008 4.008 28 C 0.091 3.909 29 C -0.129 4.129 30 C 0.170 3.830 31 H 0.016 0.984 32 H 0.251 0.749 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.170 0.830 42 H 0.148 0.852 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.567 -10.914 8.580 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.136 4.136 13 H 0.096 0.904 14 C 0.006 3.994 15 N -0.325 5.325 16 C 0.350 3.650 17 O -0.434 6.434 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.159 4.159 21 C 0.005 3.995 22 N -0.197 5.197 23 H 0.252 0.748 24 C -0.084 4.084 25 C -0.219 4.219 26 C -0.128 4.128 27 C -0.027 4.027 28 C -0.031 4.031 29 C -0.168 4.168 30 C 0.062 3.938 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.187 0.813 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.231 -11.024 8.867 20.788 hybrid contribution 0.789 1.350 -0.156 1.572 sum 16.019 -9.674 8.711 20.642 Atomic orbital electron populations 1.69956 1.04904 1.24929 1.56649 1.24775 0.95562 0.97549 1.02468 0.86206 0.78674 0.84046 0.77457 1.21784 1.21785 1.20680 1.18948 0.90861 0.82452 1.43011 0.90377 1.44296 1.05159 0.99381 1.82939 1.21279 0.85468 0.88584 0.99916 1.23115 0.95223 0.99425 1.00252 1.22734 0.97374 0.98483 0.95006 0.90436 1.21538 0.79685 1.02721 0.95499 1.47925 1.09034 1.39231 1.36282 1.18177 0.86953 0.80376 0.79477 1.90726 1.61277 1.36651 1.54733 1.19626 0.94148 0.94637 1.07373 1.21177 0.93872 0.97776 0.96504 1.19703 0.94561 0.96382 1.05277 1.18434 0.84698 0.95887 1.00523 1.41782 1.09670 1.10039 1.58242 0.74774 1.21803 1.00062 0.83148 1.03345 1.21742 0.91802 0.99253 1.09080 1.19122 0.94007 0.93209 1.06469 1.20585 0.91283 0.98075 0.92791 1.22517 0.94563 0.94614 0.91370 1.21594 0.98630 1.00780 0.95767 1.20230 0.90879 0.87100 0.95573 0.96616 0.93835 0.95143 0.92375 0.92072 0.92256 0.90441 0.90210 0.83438 0.85669 0.81256 0.83440 0.84968 0.88783 0.89233 0.90651 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.54 55.49 0.58 -25.50 16 2 C -0.01 -0.18 5.45 -17.43 -0.10 -0.28 16 3 Si 0.91 21.19 29.56 -169.99 -5.02 16.17 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.22 -5.74 9.03 -15.06 -0.14 -5.88 16 8 H 0.08 1.90 6.66 -52.48 -0.35 1.55 16 9 N -0.59 -13.95 3.12 -164.50 -0.51 -14.47 16 10 C 0.17 4.00 4.69 -2.74 -0.01 3.99 16 11 C -0.14 -2.61 6.29 -24.33 -0.15 -2.77 16 12 C -0.12 -2.07 3.86 -88.38 -0.34 -2.41 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 2.31 5.46 -3.91 -0.02 2.29 16 15 N -0.59 -10.23 2.94 -174.17 -0.51 -10.75 16 16 C 0.56 9.80 7.44 -12.42 -0.09 9.71 16 17 O -0.55 -11.17 16.14 5.30 0.09 -11.08 16 18 C -0.15 -2.28 5.49 -104.98 -0.58 -2.85 16 19 C -0.07 -0.95 7.33 -39.54 -0.29 -1.24 16 20 C -0.14 -1.54 10.00 -39.86 -0.40 -1.93 16 21 C 0.11 1.26 7.27 -83.96 -0.61 0.64 16 22 N -0.59 -4.68 6.05 -10.61 -0.06 -4.75 16 23 H 0.42 1.98 8.96 -40.82 -0.37 1.61 16 24 C 0.04 0.30 11.81 -16.73 -0.20 0.11 16 25 C -0.19 -1.85 11.09 -37.65 -0.42 -2.26 16 26 C -0.12 -1.52 6.36 -105.16 -0.67 -2.19 16 27 C -0.01 -0.11 9.64 -38.86 -0.37 -0.48 16 28 C 0.09 1.48 4.68 -3.67 -0.02 1.46 16 29 C -0.13 -2.20 5.16 -27.64 -0.14 -2.35 16 30 C 0.17 3.35 2.85 -68.37 -0.19 3.16 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.03 0.77 7.52 -51.93 -0.39 0.38 16 34 H 0.06 1.53 7.05 -51.93 -0.37 1.16 16 35 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.55 6.80 -51.93 -0.35 1.19 16 38 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 39 H 0.15 1.86 5.45 -52.48 -0.29 1.58 16 40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.79 7.92 -52.48 -0.42 1.37 16 44 H 0.09 1.31 3.94 -51.93 -0.20 1.11 16 45 H 0.09 1.64 7.46 -51.93 -0.39 1.25 16 46 H 0.07 1.31 7.02 -51.93 -0.36 0.95 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -32.18 362.38 -11.08 -43.26 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.36 Total: 4.93 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.74 Total: -3.28 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.50 Total: -55.46 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.18 -11.08 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036804686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.421 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds