Wall clock time and date at job start Tue Mar 31 2020 23:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00244 * 2 1 4 4 H 1.48498 * 109.46728 * 240.00012 * 3 2 1 5 5 H 1.48502 * 109.46601 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47050 * 120.00005 * 3 2 1 7 7 C 1.38819 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.68004 * 0.03817 * 9 7 2 11 11 C 1.55178 * 105.01216 * 203.83037 * 10 9 7 12 12 C 1.53665 * 101.41649 * 324.50586 * 11 10 9 13 13 C 1.53652 * 111.41429 * 155.02473 * 12 11 10 14 14 C 1.55435 * 101.31302 * 87.06163 * 13 12 11 15 15 N 1.47565 * 104.87514 * 35.82664 * 14 13 12 16 16 C 1.34784 * 125.67106 * 156.03233 * 15 14 13 17 17 O 1.21668 * 119.99637 * 185.15475 * 16 15 14 18 18 C 1.46911 * 120.00183 * 4.87902 * 16 15 14 19 19 C 1.36377 * 126.76633 * 24.82010 * 18 16 15 20 20 N 1.35473 * 109.76540 * 179.86395 * 19 18 16 21 21 H 0.97001 * 124.77891 * 180.17021 * 20 19 18 22 22 C 1.37957 * 110.42921 * 0.42041 * 20 19 18 23 23 C 1.39121 * 133.19222 * 179.75358 * 22 20 19 24 24 C 1.37759 * 119.93250 * 180.02562 * 23 22 20 25 25 C 1.38753 * 120.63362 * 359.96221 * 24 23 22 26 26 C 1.37754 * 120.30424 * 0.02562 * 25 24 23 27 27 C 1.39279 * 119.66752 * 0.02562 * 26 25 24 28 28 C 1.47397 * 108.65317 * 335.76894 * 15 14 13 29 29 C 1.47412 * 125.67218 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00177 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.32870 * 322.71574 * 10 9 7 32 32 H 1.08996 * 110.33326 * 84.83704 * 10 9 7 33 33 H 1.08998 * 111.03697 * 206.47122 * 11 10 9 34 34 H 1.09000 * 111.03520 * 82.53826 * 11 10 9 35 35 H 1.08997 * 111.03721 * 205.29399 * 13 12 11 36 36 H 1.09006 * 111.03691 * 329.18253 * 13 12 11 37 37 H 1.08990 * 110.49005 * 276.93957 * 14 13 12 38 38 H 1.09003 * 110.30304 * 154.61824 * 14 13 12 39 39 H 1.08000 * 125.11639 * 0.02562 * 19 18 16 40 40 H 1.08002 * 120.02609 * 0.03798 * 23 22 20 41 41 H 1.07997 * 119.68073 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.84943 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.16515 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.98352 * 121.72106 * 28 15 14 45 45 H 1.09000 * 109.98499 * 242.98374 * 28 15 14 46 46 H 1.08995 * 109.98572 * 58.56869 * 29 9 7 47 47 H 1.09000 * 109.98537 * 297.26039 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1429 -2.5340 -0.0008 11 6 -0.4078 -3.9378 0.6053 12 6 0.7833 -4.7369 0.0539 13 6 1.1145 -5.9403 0.9500 14 6 0.1664 -7.0250 0.3665 15 7 0.1369 -6.7612 -1.0851 16 6 -0.1581 -7.6633 -2.0421 17 8 -0.0607 -7.3587 -3.2160 18 6 -0.5915 -9.0162 -1.6678 19 6 -1.1871 -9.3884 -0.4987 20 7 -1.4433 -10.7185 -0.5183 21 1 -1.8657 -11.2113 0.2026 22 6 -1.0138 -11.2742 -1.7057 23 6 -1.0357 -12.5691 -2.2140 24 6 -0.5186 -12.8254 -3.4648 25 6 0.0259 -11.8025 -4.2279 26 6 0.0567 -10.5138 -3.7424 27 6 -0.4617 -10.2406 -2.4788 28 6 0.4775 -5.3455 -1.3139 29 6 1.9327 -3.7313 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.6008 -1.7619 0.6175 32 1 -0.5279 -2.4806 -1.0191 33 1 -1.3526 -4.3466 0.2472 34 1 -0.3858 -3.9041 1.6946 35 1 2.1597 -6.2308 0.8445 36 1 0.8723 -5.7307 1.9920 37 1 -0.8330 -6.9260 0.7898 38 1 0.5647 -8.0206 0.5625 39 1 -1.4218 -8.7224 0.3185 40 1 -1.4580 -13.3724 -1.6284 41 1 -0.5373 -13.8322 -3.8552 42 1 0.4275 -12.0177 -5.2072 43 1 0.4814 -9.7194 -4.3381 44 1 1.3535 -5.2726 -1.9584 45 1 -0.3658 -4.8288 -1.7722 46 1 2.5729 -3.8507 0.8745 47 1 2.5137 -3.8775 -0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041450741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:06 Heat of formation + Delta-G solvation = 40.081408 kcal Electronic energy + Delta-G solvation = -28987.966044 eV Core-core repulsion = 25135.936333 eV Total energy + Delta-G solvation = -3852.029711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46445 -41.27382 -39.45968 -37.89595 -37.13995 -34.52452 -33.07617 -32.10546 -30.68207 -30.49039 -30.35440 -29.40460 -27.32919 -25.88738 -24.15663 -23.79590 -22.87219 -22.62854 -22.18123 -20.30090 -19.99277 -18.91847 -18.60806 -17.75523 -17.13647 -16.92259 -16.86005 -16.54889 -16.05780 -15.75272 -15.59913 -15.58027 -15.00315 -14.83397 -14.60418 -14.57279 -14.20892 -13.76665 -13.70284 -13.59219 -13.41469 -13.03902 -12.90593 -12.82468 -12.69736 -12.60645 -12.56961 -12.39102 -12.05210 -11.95371 -11.81818 -11.52884 -11.43960 -11.16402 -10.99579 -10.72801 -10.71075 -9.68984 -9.27724 -8.87847 -8.75340 -7.76518 -5.20580 0.02819 0.57574 1.03645 1.45919 1.49496 1.55628 1.88634 2.12381 2.32238 2.50234 2.95563 3.30346 3.47636 3.55929 3.66175 3.71314 3.79007 3.88654 3.90812 4.20392 4.23376 4.31238 4.35502 4.39297 4.45964 4.57825 4.63252 4.64778 4.72790 4.75189 4.77341 4.79556 4.91353 5.00339 5.05100 5.09363 5.13794 5.27668 5.31797 5.40337 5.44750 5.47287 5.53329 5.62879 5.65529 5.70709 5.83890 6.13134 6.32020 6.56277 6.59568 7.11721 7.20512 7.79041 8.43278 9.25170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.002249 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.498538 B =12448.231268 C =12875.448051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.153 3.847 11 C -0.109 4.109 12 C -0.069 4.069 13 C -0.107 4.107 14 C 0.095 3.905 15 N -0.613 5.613 16 C 0.594 3.406 17 O -0.602 6.602 18 C -0.269 4.269 19 C 0.144 3.856 20 N -0.558 5.558 21 H 0.442 0.558 22 C 0.076 3.924 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.095 4.095 28 C 0.136 3.864 29 C 0.146 3.854 30 H 0.247 0.753 31 H 0.073 0.927 32 H -0.026 1.026 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.220 0.780 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -30.441 5.409 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.353 5.353 10 C 0.028 3.972 11 C -0.147 4.147 12 C -0.070 4.070 13 C -0.145 4.145 14 C -0.026 4.026 15 N -0.345 5.345 16 C 0.387 3.613 17 O -0.485 6.485 18 C -0.279 4.279 19 C 0.010 3.990 20 N -0.161 5.161 21 H 0.285 0.715 22 C -0.029 4.029 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.158 4.158 26 C -0.124 4.124 27 C -0.100 4.100 28 C 0.013 3.987 29 C 0.021 3.979 30 H 0.056 0.944 31 H 0.091 0.909 32 H -0.008 1.008 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.237 0.763 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.677 -30.210 4.853 30.952 hybrid contribution 0.425 1.760 -0.725 1.951 sum -4.252 -28.450 4.127 29.060 Atomic orbital electron populations 1.70049 1.06173 1.25032 1.58627 1.25633 0.96661 1.00973 1.02840 0.85130 0.77119 0.78793 0.78156 1.20949 1.21945 1.19845 1.19416 0.90988 0.83878 1.42494 0.90271 1.44948 1.02736 1.00835 1.86747 1.21789 0.83931 0.95482 0.95997 1.22723 0.96507 0.94713 1.00780 1.21365 0.96296 0.95271 0.94109 1.22729 1.00258 0.91639 0.99916 1.22953 1.01385 1.00512 0.77710 1.48544 1.68303 1.09317 1.08358 1.17443 0.76216 0.83876 0.83737 1.90743 1.56777 1.80686 1.20247 1.19814 1.17800 0.91598 0.98711 1.22765 0.94206 0.84824 0.97246 1.41517 1.51409 1.07203 1.15923 0.71547 1.18406 1.02043 0.94662 0.87786 1.20462 1.03188 0.92921 0.97089 1.21223 0.97522 1.00117 0.93541 1.21236 1.01517 0.91832 1.01205 1.20663 0.99810 0.97486 0.94461 1.19062 1.03092 0.92270 0.95538 1.21539 0.99030 0.81072 0.97064 1.21290 0.94326 0.84361 0.97971 0.94383 0.90862 1.00793 0.90345 0.89641 0.90066 0.86822 0.88099 0.87723 0.76337 0.82425 0.82339 0.84394 0.88363 0.93882 0.93702 0.93762 0.97159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 10.09 21.65 0.22 -57.30 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 3 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.65 10.28 84.04 0.86 -12.79 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -32.75 3.41 -693.05 -2.36 -35.11 16 10 C 0.15 7.60 5.85 86.92 0.51 8.11 16 11 C -0.11 -3.75 5.85 31.56 0.18 -3.57 16 12 C -0.07 -2.22 0.61 -51.87 -0.03 -2.25 16 13 C -0.11 -2.22 5.94 31.65 0.19 -2.03 16 14 C 0.10 1.63 5.15 87.01 0.45 2.07 16 15 N -0.61 -17.56 3.34 -816.80 -2.73 -20.29 16 16 C 0.59 19.88 7.79 86.51 0.67 20.56 16 17 O -0.60 -26.43 17.09 -4.25 -0.07 -26.51 16 18 C -0.27 -6.81 5.93 -19.02 -0.11 -6.92 16 19 C 0.14 1.98 10.03 83.70 0.84 2.82 16 20 N -0.56 -5.69 5.99 -187.08 -1.12 -6.81 16 21 H 0.44 0.60 8.96 -92.71 -0.83 -0.23 16 22 C 0.08 1.32 7.26 38.92 0.28 1.60 16 23 C -0.12 -1.49 10.07 22.37 0.23 -1.27 16 24 C -0.11 -1.45 10.01 22.28 0.22 -1.23 16 25 C -0.14 -2.71 10.03 22.28 0.22 -2.48 16 26 C -0.11 -2.86 10.01 22.41 0.22 -2.63 16 27 C -0.10 -2.47 6.29 -20.08 -0.13 -2.60 16 28 C 0.14 4.82 6.03 86.14 0.52 5.34 16 29 C 0.15 6.00 6.51 86.14 0.56 6.56 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.07 4.12 5.89 -2.39 -0.01 4.10 16 32 H -0.03 -1.45 8.14 -2.39 -0.02 -1.46 16 33 H 0.08 2.41 7.94 -2.39 -0.02 2.39 16 34 H 0.09 2.63 7.82 -2.39 -0.02 2.62 16 35 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.11 1.83 7.78 -2.38 -0.02 1.81 16 37 H 0.10 1.13 7.30 -2.39 -0.02 1.11 16 38 H 0.10 1.24 6.91 -2.39 -0.02 1.23 16 39 H 0.22 1.21 5.83 -2.91 -0.02 1.20 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.10 3.15 7.84 -2.91 -0.02 3.12 16 44 H 0.04 1.73 7.44 -2.39 -0.02 1.71 16 45 H 0.04 1.81 7.78 -2.39 -0.02 1.79 16 46 H 0.04 1.70 7.86 -2.39 -0.02 1.68 16 47 H 0.01 0.46 7.41 -2.39 -0.02 0.44 16 Total: -1.00 -86.09 373.22 2.29 -83.80 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.17 Total: 7.87 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.16 Total: 5.79 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -5.99 Total: -119.51 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -86.09 2.29 -83.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041450741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.885 kcal (2) G-P(sol) polarization free energy of solvation -86.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds