Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48506 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47221 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47068 * 60.00759 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.47560 * 125.67666 * 0.04399 * 9 7 2 11 11 C 1.55184 * 105.00721 * 203.82278 * 10 9 7 12 12 C 1.53653 * 101.42009 * 324.50908 * 11 10 9 13 13 C 1.53653 * 111.41882 * 272.72956 * 12 11 10 14 14 C 1.55429 * 101.31115 * 204.77193 * 13 12 11 15 15 N 1.47567 * 104.88209 * 35.83125 * 14 13 12 16 16 C 1.34771 * 125.67789 * 156.02879 * 15 14 13 17 17 O 1.21592 * 120.00414 * 184.99219 * 16 15 14 18 18 C 1.47507 * 119.99813 * 4.99780 * 16 15 14 19 19 C 1.39346 * 120.21192 * 36.28982 * 18 16 15 20 20 C 1.38315 * 120.49922 * 180.02562 * 19 18 16 21 21 C 1.37912 * 120.59200 * 0.22153 * 20 19 18 22 22 C 1.39537 * 119.98702 * 359.57180 * 21 20 19 23 23 C 1.46577 * 133.95076 * 180.09831 * 22 21 20 24 24 C 1.34214 * 106.88748 * 180.29082 * 23 22 21 25 25 N 1.36896 * 109.88568 * 0.02562 * 24 23 22 26 26 H 0.97007 * 125.01681 * 179.97438 * 25 24 23 27 27 C 1.37124 * 109.97003 * 359.97438 * 25 24 23 28 28 C 1.47409 * 108.64799 * 335.76529 * 15 14 13 29 29 C 1.47412 * 125.67078 * 180.02562 * 9 7 2 30 30 H 0.96996 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.33353 * 322.70931 * 10 9 7 32 32 H 1.09005 * 110.33219 * 84.83997 * 10 9 7 33 33 H 1.08995 * 111.03518 * 206.46887 * 11 10 9 34 34 H 1.09001 * 111.02860 * 82.54368 * 11 10 9 35 35 H 1.08991 * 111.03868 * 323.00838 * 13 12 11 36 36 H 1.09003 * 111.03116 * 86.90078 * 13 12 11 37 37 H 1.08999 * 110.48771 * 276.93995 * 14 13 12 38 38 H 1.09005 * 110.30787 * 154.62520 * 14 13 12 39 39 H 1.08002 * 119.74852 * 0.04833 * 19 18 16 40 40 H 1.08005 * 119.70637 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.00404 * 179.69544 * 21 20 19 42 42 H 1.08000 * 126.55223 * 0.32006 * 23 22 21 43 43 H 1.08001 * 125.05059 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.98380 * 121.72063 * 28 15 14 45 45 H 1.08993 * 109.98515 * 242.99191 * 28 15 14 46 46 H 1.08997 * 109.98250 * 58.57495 * 29 9 7 47 47 H 1.09001 * 109.98179 * 297.26655 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1428 -2.5340 -0.0009 11 6 -0.4072 -3.9381 0.6047 12 6 0.7834 -4.7369 0.0522 13 6 0.4708 -5.3243 -1.3328 14 6 1.4440 -6.5354 -1.3770 15 7 1.4773 -7.0456 0.0072 16 6 1.7963 -8.3025 0.3743 17 8 1.7030 -8.6379 1.5393 18 6 2.2586 -9.2713 -0.6374 19 6 3.0624 -8.8508 -1.6952 20 6 3.4989 -9.7541 -2.6474 21 6 3.1425 -11.0840 -2.5686 22 6 2.3420 -11.5304 -1.5165 23 6 1.7944 -12.8363 -1.1381 24 6 1.0825 -12.6501 -0.0156 25 7 1.1305 -11.3326 0.3530 26 1 0.6915 -10.9562 1.1319 27 6 1.8905 -10.6235 -0.5412 28 6 1.1099 -5.9499 0.9224 29 6 1.9328 -3.7313 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.6003 -1.7622 0.6181 32 1 -0.5285 -2.4802 -1.0190 33 1 -1.3523 -4.3468 0.2470 34 1 -0.3845 -3.9049 1.6939 35 1 -0.5677 -5.6494 -1.3946 36 1 0.7023 -4.6093 -2.1223 37 1 2.4386 -6.2144 -1.6865 38 1 1.0646 -7.3011 -2.0538 39 1 3.3470 -7.8118 -1.7718 40 1 4.1217 -9.4143 -3.4616 41 1 3.4846 -11.7802 -3.3201 42 1 1.9369 -13.7699 -1.6620 43 1 0.5510 -13.4246 0.5175 44 1 0.2366 -6.2325 1.5102 45 1 1.9455 -5.7207 1.5835 46 1 2.5729 -3.8507 0.8736 47 1 2.5139 -3.8773 -0.9111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041705310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = 61.713327 kcal Electronic energy + Delta-G solvation = -29206.473670 eV Core-core repulsion = 25355.381990 eV Total energy + Delta-G solvation = -3851.091681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59880 -40.21833 -38.40733 -36.96124 -35.68016 -32.89715 -32.14707 -30.46121 -29.69081 -29.50059 -29.07150 -28.16440 -25.75929 -24.55602 -23.05579 -22.76039 -21.87201 -21.19069 -20.36206 -19.69642 -18.88025 -17.79666 -17.23140 -16.73793 -16.35702 -15.87366 -15.53828 -15.07099 -14.82207 -14.64576 -14.37048 -14.22754 -13.87851 -13.80997 -13.35511 -13.14772 -12.84060 -12.73186 -12.57703 -12.34401 -11.98270 -11.96568 -11.86037 -11.60292 -11.51393 -11.31198 -11.19555 -10.92295 -10.80302 -10.22825 -10.11201 -10.03339 -9.95382 -9.82691 -9.78599 -9.51183 -8.67924 -8.63914 -8.47293 -7.98210 -6.85477 -5.67542 -3.08893 0.57157 1.40000 2.30097 2.80189 2.96469 2.98118 3.38408 3.44205 3.46492 3.68982 4.31379 4.46080 4.48330 4.67527 4.71253 4.76976 4.89581 4.99094 5.03631 5.13454 5.28181 5.30707 5.38847 5.46671 5.49564 5.57011 5.65832 5.70234 5.77389 5.81284 5.91897 6.01229 6.08297 6.15409 6.21511 6.25282 6.28966 6.33134 6.42882 6.47483 6.52160 6.61383 6.71401 6.80793 6.87076 7.27554 7.48550 7.51085 7.60848 7.83425 8.08746 8.33451 9.19895 9.80474 10.45426 11.36574 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.002387 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.048652 B =11725.449658 C =12217.171376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.155 3.845 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.114 4.114 14 C 0.097 3.903 15 N -0.608 5.608 16 C 0.573 3.427 17 O -0.552 6.552 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.156 4.156 21 C -0.047 4.047 22 C -0.120 4.120 23 C -0.204 4.204 24 C 0.050 3.950 25 N -0.584 5.584 26 H 0.423 0.577 27 C 0.145 3.855 28 C 0.125 3.875 29 C 0.152 3.848 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.013 0.987 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.025 0.975 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.538 -24.245 -5.087 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.025 4.025 15 N -0.340 5.340 16 C 0.363 3.637 17 O -0.432 6.432 18 C -0.146 4.146 19 C -0.082 4.082 20 C -0.175 4.175 21 C -0.066 4.066 22 C -0.125 4.125 23 C -0.229 4.229 24 C -0.076 4.076 25 N -0.186 5.186 26 H 0.261 0.739 27 C 0.034 3.966 28 C 0.003 3.997 29 C 0.026 3.974 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.397 -24.236 -4.320 24.658 hybrid contribution 0.304 1.009 0.300 1.096 sum 1.701 -23.227 -4.020 23.634 Atomic orbital electron populations 1.69806 1.04877 1.24662 1.57754 1.24781 0.95729 0.97705 1.02492 0.86008 0.78670 0.83644 0.77243 1.20540 1.21773 1.21755 1.19119 0.90521 0.82420 1.42866 0.90468 1.44631 1.01886 0.99585 1.86905 1.21961 0.84601 0.92171 0.98247 1.22873 0.94986 0.98857 1.00268 1.21558 0.98604 0.93659 0.94504 1.22695 0.98809 0.95937 0.97720 1.22703 1.00255 0.96650 0.82928 1.48581 1.66850 1.09479 1.09073 1.17904 0.77314 0.80675 0.87781 1.90751 1.55137 1.78060 1.19255 1.18815 1.06303 0.90369 0.99124 1.21271 0.94978 1.00283 0.91664 1.20829 1.03309 0.92980 1.00399 1.20691 0.94703 0.95526 0.95683 1.19198 1.02965 0.93391 0.96967 1.21689 1.05250 0.96595 0.99372 1.21915 1.02335 0.85358 0.98002 1.41867 1.44395 1.07369 1.24986 0.73917 1.17925 0.95526 0.91580 0.91553 1.21934 1.00544 0.84916 0.92312 1.21131 0.92714 0.85540 0.98045 0.93788 0.87725 0.96862 0.92021 0.91858 0.90705 0.89060 0.90864 0.90458 0.84689 0.85220 0.85598 0.83378 0.81107 0.91199 0.91063 0.95684 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.10 55.49 0.56 -25.92 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.05 10.28 -15.06 -0.15 -6.20 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.99 3.41 -170.40 -0.58 -15.57 16 10 C 0.15 3.62 5.83 -2.31 -0.01 3.61 16 11 C -0.13 -2.37 5.93 -25.24 -0.15 -2.52 16 12 C -0.08 -1.35 0.61 -154.02 -0.09 -1.45 16 13 C -0.11 -1.58 5.87 -25.10 -0.15 -1.72 16 14 C 0.10 1.17 5.18 -2.17 -0.01 1.16 16 15 N -0.61 -8.68 3.34 -171.93 -0.57 -9.25 16 16 C 0.57 8.71 7.50 -12.49 -0.09 8.62 16 17 O -0.55 -9.85 16.54 5.28 0.09 -9.76 16 18 C -0.14 -1.84 5.43 -104.87 -0.57 -2.41 16 19 C -0.06 -0.68 8.15 -39.14 -0.32 -1.00 16 20 C -0.16 -1.43 10.00 -39.67 -0.40 -1.83 16 21 C -0.05 -0.44 10.09 -39.22 -0.40 -0.84 16 22 C -0.12 -1.32 6.37 -105.15 -0.67 -1.99 16 23 C -0.20 -1.81 11.09 -37.64 -0.42 -2.23 16 24 C 0.05 0.41 11.82 -16.71 -0.20 0.22 16 25 N -0.58 -6.33 5.95 -10.45 -0.06 -6.39 16 26 H 0.42 4.44 8.34 -40.82 -0.34 4.10 16 27 C 0.14 1.82 6.87 -83.76 -0.58 1.24 16 28 C 0.12 1.94 6.14 -3.64 -0.02 1.92 16 29 C 0.15 3.03 6.39 -3.64 -0.02 3.01 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 34 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 36 H 0.09 1.34 7.94 -51.93 -0.41 0.92 16 37 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 38 H 0.08 0.82 7.26 -51.93 -0.38 0.44 16 39 H 0.14 1.32 5.70 -52.49 -0.30 1.03 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 45 H 0.07 1.17 7.42 -51.93 -0.39 0.79 16 46 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 47 H 0.02 0.47 7.78 -51.93 -0.40 0.06 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -32.79 371.95 -10.90 -43.68 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.57 Total: 3.59 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -4.34 Total: -2.82 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.66 Total: -57.14 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.79 -10.90 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041705310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.398 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds