Wall clock time and date at job start Tue Mar 31 2020 23:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47185 * 300.00062 * 3 2 1 6 6 H 1.48502 * 109.47118 * 60.00065 * 3 2 1 7 7 C 1.38811 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00496 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.39685 * 0.04057 * 9 7 2 11 11 C 1.55294 * 107.04341 * 174.96404 * 10 9 7 12 12 C 1.53704 * 101.81252 * 337.55052 * 11 10 9 13 13 H 1.09000 * 111.69792 * 281.16666 * 12 11 10 14 14 C 1.51981 * 115.00341 * 153.47063 * 12 11 10 15 15 C 1.53885 * 107.28824 * 184.56016 * 14 12 11 16 16 N 1.46587 * 110.71213 * 51.81433 * 15 14 12 17 17 C 1.34770 * 119.75719 * 132.25545 * 16 15 14 18 18 O 1.21676 * 120.00420 * 185.46773 * 17 16 15 19 19 C 1.46912 * 119.99765 * 5.46153 * 17 16 15 20 20 C 1.36370 * 126.76856 * 38.85768 * 19 17 16 21 21 N 1.35474 * 109.76890 * 179.73651 * 20 19 17 22 22 H 0.96996 * 124.78657 * 180.02562 * 21 20 19 23 23 C 1.37966 * 110.42917 * 0.02562 * 21 20 19 24 24 C 1.39117 * 133.19343 * 180.02562 * 23 21 20 25 25 C 1.37766 * 119.92843 * 179.97438 * 24 23 21 26 26 C 1.38747 * 120.63756 * 0.04456 * 25 24 23 27 27 C 1.37752 * 120.30350 * 359.95340 * 26 25 24 28 28 C 1.39278 * 119.66721 * 0.02562 * 27 26 25 29 29 C 1.47807 * 120.49103 * 312.52309 * 16 15 14 30 30 C 1.45499 * 126.40163 * 179.97438 * 9 7 2 31 31 H 1.09007 * 109.56947 * 93.40808 * 30 9 7 32 32 H 0.97009 * 120.00060 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.91918 * 294.31111 * 10 9 7 34 34 H 1.08997 * 109.92174 * 55.41060 * 10 9 7 35 35 H 1.09004 * 110.96131 * 219.42589 * 11 10 9 36 36 H 1.08997 * 110.96558 * 95.68359 * 11 10 9 37 37 H 1.09000 * 109.89135 * 65.11058 * 14 12 11 38 38 H 1.09007 * 109.94964 * 304.03922 * 14 12 11 39 39 H 1.09001 * 109.22967 * 291.49357 * 15 14 12 40 40 H 1.08997 * 109.19558 * 172.11151 * 15 14 12 41 41 H 1.08003 * 125.11627 * 359.77387 * 20 19 17 42 42 H 1.08002 * 120.03551 * 359.93169 * 24 23 21 43 43 H 1.08003 * 119.67857 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.84751 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.16646 * 180.02562 * 27 26 25 46 46 H 1.08995 * 110.06271 * 170.20225 * 29 16 15 47 47 H 1.09000 * 110.06452 * 291.76640 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5531 -0.0008 11 6 -0.4343 -4.0737 -0.1306 12 6 0.8689 -4.5874 -0.7635 13 1 0.9015 -4.3903 -1.8350 14 6 1.1978 -6.0411 -0.4664 15 6 2.5783 -6.3324 -1.0808 16 7 3.5607 -5.3358 -0.6443 17 6 4.7633 -5.7375 -0.1874 18 8 5.5440 -4.9232 0.2686 19 6 5.1316 -7.1588 -0.2399 20 6 4.8509 -8.0383 -1.2435 21 7 5.3567 -9.2576 -0.9390 22 1 5.2824 -10.0439 -1.5022 23 6 5.9924 -9.2233 0.2850 24 6 6.6615 -10.1831 1.0376 25 6 7.2080 -9.8431 2.2557 26 6 7.0976 -8.5490 2.7437 27 6 6.4389 -7.5845 2.0134 28 6 5.8820 -7.9142 0.7801 29 6 3.2400 -3.8939 -0.6960 30 6 1.9080 -3.7214 0.0005 31 1 1.9982 -4.0804 1.0258 32 1 -0.4851 0.8401 0.0004 33 1 -0.5638 -2.1747 0.9325 34 1 -0.5799 -2.0169 -0.8452 35 1 -1.2848 -4.2551 -0.7878 36 1 -0.5966 -4.5248 0.8483 37 1 0.4470 -6.6907 -0.9163 38 1 1.2298 -6.2025 0.6112 39 1 2.5001 -6.3073 -2.1677 40 1 2.9082 -7.3229 -0.7675 41 1 4.3075 -7.7987 -2.1456 42 1 6.7519 -11.1937 0.6677 43 1 7.7262 -10.5915 2.8369 44 1 7.5305 -8.2966 3.7005 45 1 6.3547 -6.5778 2.3951 46 1 4.0089 -3.3210 -0.1777 47 1 3.1619 -3.5651 -1.7323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042138303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:16 Heat of formation + Delta-G solvation = 63.465070 kcal Electronic energy + Delta-G solvation = -29577.987695 eV Core-core repulsion = 25726.971975 eV Total energy + Delta-G solvation = -3851.015719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67422 -39.82447 -37.97709 -37.11936 -35.27252 -32.85411 -32.27667 -31.20604 -29.99398 -29.67607 -28.76729 -28.12858 -24.79774 -24.21310 -23.17439 -22.28828 -21.92385 -21.83206 -20.08050 -19.56202 -18.88716 -17.87323 -16.82017 -16.58652 -16.19748 -15.80089 -15.29538 -15.08468 -14.61497 -14.55704 -14.26659 -14.19690 -13.95266 -13.83393 -13.50621 -13.16648 -13.00145 -12.79899 -12.47160 -12.20892 -11.90301 -11.88799 -11.76290 -11.47145 -11.25480 -11.14057 -10.90352 -10.75277 -10.72417 -10.09043 -9.95038 -9.92192 -9.79897 -9.64215 -9.56203 -9.41675 -8.59307 -8.49058 -8.34223 -7.90438 -6.81166 -5.68116 -3.01481 0.84678 1.39247 2.00703 2.73744 3.09580 3.41536 3.44269 3.50988 3.53653 3.79275 4.46731 4.54187 4.55687 4.65717 4.91867 4.95110 4.98479 5.07829 5.11808 5.26475 5.35788 5.42880 5.49259 5.52219 5.56619 5.64828 5.73068 5.81117 5.90091 5.98718 6.07177 6.11469 6.18336 6.22208 6.22642 6.32835 6.43126 6.46418 6.50042 6.55891 6.60647 6.79078 6.82736 6.90694 7.11179 7.14164 7.59531 7.63406 7.71042 7.85513 8.27124 8.49115 9.23309 9.86247 10.53008 11.44355 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.002930 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.136858 B = 9553.906928 C =10457.026330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.120 4.120 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.584 3.416 18 O -0.538 6.538 19 C -0.212 4.212 20 C 0.097 3.903 21 N -0.582 5.582 22 H 0.419 0.581 23 C 0.087 3.913 24 C -0.130 4.130 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.062 4.062 28 C -0.066 4.066 29 C 0.118 3.882 30 C 0.156 3.844 31 H 0.023 0.977 32 H 0.251 0.749 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.181 0.819 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.093 0.907 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -24.511 -2.509 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.132 4.132 13 H 0.095 0.905 14 C -0.158 4.158 15 C -0.021 4.021 16 N -0.336 5.336 17 C 0.372 3.628 18 O -0.416 6.416 19 C -0.223 4.223 20 C -0.034 4.034 21 N -0.184 5.184 22 H 0.256 0.744 23 C -0.019 4.019 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.070 4.070 29 C -0.005 4.005 30 C 0.047 3.953 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.198 0.802 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.111 0.889 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.903 -23.887 -2.343 25.269 hybrid contribution 0.220 0.519 -0.375 0.677 sum 8.123 -23.368 -2.718 24.889 Atomic orbital electron populations 1.69955 1.04889 1.24886 1.57273 1.24777 0.95678 0.97632 1.02270 0.86073 0.78968 0.83826 0.77166 1.20330 1.21819 1.21791 1.19112 0.90504 0.82255 1.43490 0.90169 1.44180 1.01648 0.99218 1.86674 1.21541 0.83720 0.88477 1.00987 1.22713 0.95955 0.99659 0.99234 1.22251 0.97400 0.93427 1.00081 0.90506 1.21805 0.95258 0.97413 1.01344 1.21924 0.89462 0.92041 0.98625 1.48133 1.13732 1.07721 1.64023 1.17325 0.81519 0.86466 0.77441 1.90795 1.50774 1.54374 1.45632 1.20097 1.10204 0.94105 0.97876 1.22148 0.97986 0.83583 0.99709 1.41498 1.48263 1.11116 1.17542 0.74405 1.18231 1.00268 0.95852 0.87509 1.19982 1.01883 0.97616 0.95557 1.20811 0.99461 0.96630 0.95023 1.20965 1.01596 0.93100 1.00506 1.20675 0.95201 0.99878 0.92302 1.18763 1.01095 0.91759 0.95413 1.21627 0.99153 0.78327 1.01350 1.20883 0.91094 0.87561 0.95755 0.95918 0.93866 0.94500 0.92605 0.92290 0.92568 0.91026 0.91419 0.91983 0.89881 0.80225 0.86205 0.85675 0.85730 0.85275 0.88899 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.43 55.49 0.58 -26.64 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.32 9.88 -15.06 -0.15 -6.47 16 8 H 0.08 2.21 7.41 -52.49 -0.39 1.83 16 9 N -0.59 -15.08 3.35 -163.20 -0.55 -15.63 16 10 C 0.18 4.27 5.46 -1.91 -0.01 4.26 16 11 C -0.14 -2.51 6.54 -25.15 -0.16 -2.67 16 12 C -0.11 -1.89 2.62 -89.53 -0.23 -2.13 16 13 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 14 C -0.12 -1.55 5.72 -26.79 -0.15 -1.70 16 15 C 0.10 1.21 5.09 -3.53 -0.02 1.19 16 16 N -0.60 -9.59 3.02 -174.48 -0.53 -10.12 16 17 C 0.58 9.99 7.58 -12.75 -0.10 9.90 16 18 O -0.54 -11.41 16.47 5.21 0.09 -11.33 16 19 C -0.21 -2.89 5.34 -103.31 -0.55 -3.44 16 20 C 0.10 0.89 9.44 -16.62 -0.16 0.74 16 21 N -0.58 -4.49 5.99 -10.48 -0.06 -4.55 16 22 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 23 C 0.09 0.91 7.26 -83.97 -0.61 0.30 16 24 C -0.13 -1.15 10.07 -39.43 -0.40 -1.54 16 25 C -0.10 -0.89 10.01 -39.57 -0.40 -1.28 16 26 C -0.14 -1.50 10.03 -39.57 -0.40 -1.89 16 27 C -0.06 -0.83 10.09 -39.37 -0.40 -1.22 16 28 C -0.07 -0.89 6.36 -104.95 -0.67 -1.56 16 29 C 0.12 2.28 5.67 -4.18 -0.02 2.26 16 30 C 0.16 3.26 2.74 -68.08 -0.19 3.07 16 31 H 0.02 0.53 7.93 -51.92 -0.41 0.12 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 39 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 40 H 0.08 0.82 4.93 -51.93 -0.26 0.56 16 41 H 0.18 1.10 7.12 -52.48 -0.37 0.73 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 46 H 0.09 2.05 6.73 -51.93 -0.35 1.70 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -35.00 370.90 -11.31 -46.31 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.70 Total: 1.32 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -4.70 Total: -2.50 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.56 Total: -56.94 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.00 -11.31 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.774 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds