Wall clock time and date at job start Tue Mar 31 2020 23:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47185 * 300.00062 * 3 2 1 6 6 H 1.48502 * 109.47118 * 60.00065 * 3 2 1 7 7 C 1.38811 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00496 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.39685 * 0.04057 * 9 7 2 11 11 C 1.55294 * 107.04341 * 174.96404 * 10 9 7 12 12 C 1.53704 * 101.81252 * 337.55052 * 11 10 9 13 13 H 1.09000 * 111.69792 * 281.16666 * 12 11 10 14 14 C 1.51981 * 115.00341 * 153.47063 * 12 11 10 15 15 C 1.53885 * 107.28824 * 184.56016 * 14 12 11 16 16 N 1.46587 * 110.71213 * 51.81433 * 15 14 12 17 17 C 1.34770 * 119.75719 * 132.25545 * 16 15 14 18 18 O 1.21676 * 120.00420 * 185.46773 * 17 16 15 19 19 C 1.46912 * 119.99765 * 5.46153 * 17 16 15 20 20 C 1.36370 * 126.76856 * 38.85768 * 19 17 16 21 21 N 1.35474 * 109.76890 * 179.73651 * 20 19 17 22 22 H 0.96996 * 124.78657 * 180.02562 * 21 20 19 23 23 C 1.37966 * 110.42917 * 0.02562 * 21 20 19 24 24 C 1.39117 * 133.19343 * 180.02562 * 23 21 20 25 25 C 1.37766 * 119.92843 * 179.97438 * 24 23 21 26 26 C 1.38747 * 120.63756 * 0.04456 * 25 24 23 27 27 C 1.37752 * 120.30350 * 359.95340 * 26 25 24 28 28 C 1.39278 * 119.66721 * 0.02562 * 27 26 25 29 29 C 1.47807 * 120.49103 * 312.52309 * 16 15 14 30 30 C 1.45499 * 126.40163 * 179.97438 * 9 7 2 31 31 H 1.09007 * 109.56947 * 93.40808 * 30 9 7 32 32 H 0.97009 * 120.00060 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.91918 * 294.31111 * 10 9 7 34 34 H 1.08997 * 109.92174 * 55.41060 * 10 9 7 35 35 H 1.09004 * 110.96131 * 219.42589 * 11 10 9 36 36 H 1.08997 * 110.96558 * 95.68359 * 11 10 9 37 37 H 1.09000 * 109.89135 * 65.11058 * 14 12 11 38 38 H 1.09007 * 109.94964 * 304.03922 * 14 12 11 39 39 H 1.09001 * 109.22967 * 291.49357 * 15 14 12 40 40 H 1.08997 * 109.19558 * 172.11151 * 15 14 12 41 41 H 1.08003 * 125.11627 * 359.77387 * 20 19 17 42 42 H 1.08002 * 120.03551 * 359.93169 * 24 23 21 43 43 H 1.08003 * 119.67857 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.84751 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.16646 * 180.02562 * 27 26 25 46 46 H 1.08995 * 110.06271 * 170.20225 * 29 16 15 47 47 H 1.09000 * 110.06452 * 291.76640 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5531 -0.0008 11 6 -0.4343 -4.0737 -0.1306 12 6 0.8689 -4.5874 -0.7635 13 1 0.9015 -4.3903 -1.8350 14 6 1.1978 -6.0411 -0.4664 15 6 2.5783 -6.3324 -1.0808 16 7 3.5607 -5.3358 -0.6443 17 6 4.7633 -5.7375 -0.1874 18 8 5.5440 -4.9232 0.2686 19 6 5.1316 -7.1588 -0.2399 20 6 4.8509 -8.0383 -1.2435 21 7 5.3567 -9.2576 -0.9390 22 1 5.2824 -10.0439 -1.5022 23 6 5.9924 -9.2233 0.2850 24 6 6.6615 -10.1831 1.0376 25 6 7.2080 -9.8431 2.2557 26 6 7.0976 -8.5490 2.7437 27 6 6.4389 -7.5845 2.0134 28 6 5.8820 -7.9142 0.7801 29 6 3.2400 -3.8939 -0.6960 30 6 1.9080 -3.7214 0.0005 31 1 1.9982 -4.0804 1.0258 32 1 -0.4851 0.8401 0.0004 33 1 -0.5638 -2.1747 0.9325 34 1 -0.5799 -2.0169 -0.8452 35 1 -1.2848 -4.2551 -0.7878 36 1 -0.5966 -4.5248 0.8483 37 1 0.4470 -6.6907 -0.9163 38 1 1.2298 -6.2025 0.6112 39 1 2.5001 -6.3073 -2.1677 40 1 2.9082 -7.3229 -0.7675 41 1 4.3075 -7.7987 -2.1456 42 1 6.7519 -11.1937 0.6677 43 1 7.7262 -10.5915 2.8369 44 1 7.5305 -8.2966 3.7005 45 1 6.3547 -6.5778 2.3951 46 1 4.0089 -3.3210 -0.1777 47 1 3.1619 -3.5651 -1.7323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042138303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:15 Heat of formation + Delta-G solvation = 40.460749 kcal Electronic energy + Delta-G solvation = -29578.985237 eV Core-core repulsion = 25726.971975 eV Total energy + Delta-G solvation = -3852.013262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50600 -41.16023 -39.46758 -37.89711 -36.78462 -34.66319 -33.21738 -32.81003 -31.28013 -30.46855 -30.29474 -29.38512 -26.56695 -25.76155 -23.99999 -23.54725 -23.07367 -22.64981 -21.80770 -21.10821 -19.93801 -18.84614 -18.54147 -17.75397 -17.21103 -16.92620 -16.77468 -16.31308 -16.00148 -15.90836 -15.64873 -15.29786 -15.18668 -14.86810 -14.70254 -14.62987 -14.30549 -14.02967 -13.82622 -13.51142 -13.44109 -13.10873 -13.06287 -12.78718 -12.66700 -12.59353 -12.47230 -12.10725 -11.99362 -11.92746 -11.77704 -11.53813 -11.33997 -11.03937 -10.99531 -10.74954 -10.63646 -9.66811 -9.25696 -8.92002 -8.71936 -7.88091 -5.22805 0.04881 0.59212 1.08824 1.41828 1.42819 1.53716 1.84340 2.08109 2.31041 2.48256 2.94854 3.30012 3.47741 3.67312 3.72760 3.87807 3.91145 3.96511 4.01101 4.20783 4.27357 4.29792 4.31419 4.39975 4.45243 4.55225 4.60334 4.63204 4.70989 4.76035 4.80636 4.86002 4.92754 4.93995 5.11969 5.13237 5.16181 5.26687 5.39602 5.45601 5.51183 5.54038 5.61437 5.63898 5.65769 5.71013 5.78141 6.13622 6.18212 6.48776 6.61550 7.07169 7.23097 7.75164 8.42103 9.23022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.002930 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.136858 B = 9553.906928 C =10457.026330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.093 4.093 13 H 0.083 0.917 14 C -0.112 4.112 15 C 0.097 3.903 16 N -0.600 5.600 17 C 0.579 3.421 18 O -0.601 6.601 19 C -0.267 4.267 20 C 0.144 3.856 21 N -0.557 5.557 22 H 0.443 0.557 23 C 0.079 3.921 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.108 4.108 28 C -0.096 4.096 29 C 0.131 3.869 30 C 0.147 3.853 31 H -0.003 1.003 32 H 0.248 0.752 33 H -0.004 1.004 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.223 0.777 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -29.730 -4.857 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.113 4.113 13 H 0.102 0.898 14 C -0.150 4.150 15 C -0.024 4.024 16 N -0.332 5.332 17 C 0.371 3.629 18 O -0.483 6.483 19 C -0.278 4.278 20 C 0.009 3.991 21 N -0.160 5.160 22 H 0.285 0.715 23 C -0.026 4.026 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.158 4.158 27 C -0.127 4.127 28 C -0.101 4.101 29 C 0.007 3.993 30 C 0.039 3.961 31 H 0.015 0.985 32 H 0.057 0.943 33 H 0.015 0.985 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.239 0.761 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.154 0.846 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.863 -29.209 -4.712 30.613 hybrid contribution 0.281 2.066 0.421 2.127 sum 8.144 -27.143 -4.291 28.661 Atomic orbital electron populations 1.70153 1.06018 1.25188 1.58321 1.25544 0.96596 1.00640 1.02674 0.85109 0.77979 0.79903 0.77001 1.19797 1.21181 1.21862 1.19338 0.90540 0.83862 1.42822 0.90974 1.44455 1.02638 1.00286 1.86449 1.21375 0.82800 0.92647 0.97627 1.22591 0.97844 0.94725 1.00796 1.22189 0.94261 0.95327 0.99473 0.89824 1.21818 0.97135 0.94764 1.01268 1.22329 0.87558 0.91846 1.00677 1.48171 1.14515 1.06638 1.63864 1.17961 0.81039 0.87839 0.76075 1.90747 1.52714 1.56401 1.48461 1.19816 1.14481 0.92731 1.00783 1.22589 0.94998 0.82712 0.98774 1.41471 1.46338 1.11522 1.16646 0.71473 1.18365 1.00934 0.94780 0.88536 1.20465 0.99471 0.98842 0.94722 1.21215 0.99402 0.96183 0.95614 1.21210 1.00358 0.93619 1.00623 1.20619 0.98704 0.99263 0.94116 1.19053 1.01689 0.93694 0.95648 1.21173 0.96884 0.80879 1.00369 1.21018 0.93461 0.86311 0.95287 0.98529 0.94306 0.98532 0.95566 0.89163 0.91608 0.86377 0.92655 0.88314 0.87087 0.76103 0.82258 0.82312 0.84570 0.88929 0.93189 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 10.43 21.65 0.23 -58.36 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.97 48.39 29.55 68.60 2.03 50.42 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.24 -14.03 9.88 84.03 0.83 -13.20 16 8 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 9 N -0.61 -32.95 3.35 -670.23 -2.24 -35.19 16 10 C 0.18 9.07 5.46 86.85 0.47 9.54 16 11 C -0.12 -4.30 6.54 31.62 0.21 -4.09 16 12 C -0.09 -2.98 2.62 -10.08 -0.03 -3.01 16 13 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 14 C -0.11 -2.46 5.72 30.56 0.17 -2.28 16 15 C 0.10 1.90 5.09 86.66 0.44 2.35 16 16 N -0.60 -19.06 3.02 -824.15 -2.49 -21.55 16 17 C 0.58 20.72 7.58 86.52 0.66 21.37 16 18 O -0.60 -28.15 16.47 -4.27 -0.07 -28.22 16 19 C -0.27 -7.09 5.34 -19.01 -0.10 -7.19 16 20 C 0.14 2.02 9.44 83.69 0.79 2.81 16 21 N -0.56 -5.77 5.99 -187.08 -1.12 -6.89 16 22 H 0.44 0.57 8.96 -92.71 -0.83 -0.26 16 23 C 0.08 1.42 7.26 38.91 0.28 1.70 16 24 C -0.11 -1.55 10.07 22.37 0.23 -1.32 16 25 C -0.11 -1.56 10.01 22.28 0.22 -1.34 16 26 C -0.14 -2.93 10.03 22.28 0.22 -2.71 16 27 C -0.11 -3.13 10.09 22.40 0.23 -2.90 16 28 C -0.10 -2.62 6.36 -20.08 -0.13 -2.74 16 29 C 0.13 5.34 5.67 85.58 0.49 5.83 16 30 C 0.15 6.40 2.74 45.43 0.12 6.52 16 31 H 0.00 -0.13 7.93 -2.38 -0.02 -0.15 16 32 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 33 H 0.00 -0.21 7.77 -2.38 -0.02 -0.22 16 34 H 0.03 1.45 7.19 -2.39 -0.02 1.43 16 35 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.40 7.99 -2.38 -0.02 1.38 16 39 H 0.10 1.33 8.13 -2.39 -0.02 1.31 16 40 H 0.11 1.63 4.93 -2.39 -0.01 1.62 16 41 H 0.22 1.21 7.12 -2.91 -0.02 1.19 16 42 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.09 3.18 8.06 -2.91 -0.02 3.16 16 46 H 0.05 2.44 6.73 -2.39 -0.02 2.43 16 47 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -88.62 370.90 2.07 -86.55 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.16 Total: 7.10 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.57 Total: 6.15 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.62 Total: -121.99 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.07 Total: -28.22 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -88.62 2.07 -86.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.007 kcal (2) G-P(sol) polarization free energy of solvation -88.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds