Wall clock time and date at job start Tue Mar 31 2020 23:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48502 * 109.46850 * 239.99989 * 3 2 1 5 5 H 1.48498 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46908 * 120.00220 * 3 2 1 7 7 C 1.38813 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.48163 * 126.39806 * 0.02562 * 9 7 2 11 11 C 1.55298 * 107.04341 * 184.97917 * 10 9 7 12 12 C 1.53703 * 101.81456 * 22.44425 * 11 10 9 13 13 H 1.09002 * 111.11215 * 78.61105 * 12 11 10 14 14 C 1.51979 * 114.99565 * 206.54711 * 12 11 10 15 15 C 1.53504 * 107.37009 * 175.28555 * 14 12 11 16 16 N 1.46590 * 110.93549 * 308.45299 * 15 14 12 17 17 C 1.34778 * 119.75418 * 227.68350 * 16 15 14 18 18 O 1.21669 * 120.00475 * 183.92839 * 17 16 15 19 19 C 1.46918 * 119.99799 * 3.92674 * 17 16 15 20 20 C 1.36374 * 126.76574 * 310.57138 * 19 17 16 21 21 N 1.35472 * 109.76552 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.78688 * 180.02562 * 21 20 19 23 23 C 1.37963 * 110.42972 * 359.97438 * 21 20 19 24 24 C 1.39120 * 133.19130 * 179.97438 * 23 21 20 25 25 C 1.37763 * 119.93054 * 180.02562 * 24 23 21 26 26 C 1.38761 * 120.63351 * 359.97438 * 25 24 23 27 27 C 1.37749 * 120.29973 * 0.02562 * 26 25 24 28 28 C 1.39278 * 119.67328 * 359.97438 * 27 26 25 29 29 C 1.47795 * 120.49126 * 47.39754 * 16 15 14 30 30 C 1.45507 * 126.39959 * 179.97438 * 9 7 2 31 31 H 1.08995 * 109.56610 * 265.86170 * 30 9 7 32 32 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.92110 * 304.32732 * 10 9 7 34 34 H 1.09002 * 109.91784 * 65.63707 * 10 9 7 35 35 H 1.09002 * 110.95949 * 140.57350 * 11 10 9 36 36 H 1.09000 * 110.96336 * 264.31318 * 11 10 9 37 37 H 1.08995 * 109.90016 * 294.87372 * 14 12 11 38 38 H 1.09003 * 109.89103 * 55.91073 * 14 12 11 39 39 H 1.08994 * 109.18865 * 188.01825 * 15 14 12 40 40 H 1.09006 * 109.05011 * 68.78791 * 15 14 12 41 41 H 1.07997 * 125.12083 * 359.97438 * 20 19 17 42 42 H 1.07994 * 120.03535 * 0.31656 * 24 23 21 43 43 H 1.07994 * 119.68564 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.84681 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.16461 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.06252 * 68.22154 * 29 16 15 47 47 H 1.09001 * 110.06661 * 189.67444 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1467 -2.5531 -0.0005 11 6 -0.4342 -4.0738 0.1283 12 6 0.8684 -4.5877 0.7620 13 1 0.8918 -4.3828 1.8324 14 6 1.1976 -6.0412 0.4641 15 6 2.5758 -6.3332 1.0739 16 7 3.5605 -5.3359 0.6443 17 6 4.7633 -5.7373 0.1874 18 8 5.6099 -4.9130 -0.1029 19 6 5.0523 -7.1702 0.0399 20 6 4.8494 -8.1440 0.9728 21 7 5.2354 -9.3432 0.4746 22 1 5.1853 -10.1842 0.9553 23 6 5.7088 -9.1998 -0.8133 24 6 6.2147 -10.0982 -1.7474 25 6 6.6195 -9.6480 -2.9849 26 6 6.5277 -8.3028 -3.3127 27 6 6.0295 -7.3979 -2.4014 28 6 5.6166 -7.8392 -1.1466 29 6 3.2419 -3.8939 0.7025 30 6 1.9082 -3.7213 -0.0016 31 1 1.9857 -4.0850 -1.0261 32 1 -0.4850 0.8401 0.0004 33 1 -0.5802 -2.0202 0.8457 34 1 -0.5629 -2.1744 -0.9341 35 1 -1.2853 -4.2555 0.7847 36 1 -0.5957 -4.5245 -0.8509 37 1 0.4467 -6.6913 0.9131 38 1 1.2295 -6.2009 -0.6137 39 1 2.9052 -7.3227 0.7572 40 1 2.4954 -6.3132 2.1608 41 1 4.4424 -7.9835 1.9601 42 1 6.2857 -11.1480 -1.5043 43 1 7.0112 -10.3489 -3.7071 44 1 6.8483 -7.9638 -4.2867 45 1 5.9594 -6.3513 -2.6587 46 1 3.1620 -3.5702 1.7403 47 1 4.0138 -3.3194 0.1904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042138305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:25 Heat of formation + Delta-G solvation = 63.431771 kcal Electronic energy + Delta-G solvation = -29639.921282 eV Core-core repulsion = 25788.904118 eV Total energy + Delta-G solvation = -3851.017163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66330 -39.81566 -37.98988 -37.10539 -35.27277 -32.85020 -32.27421 -31.20323 -29.96096 -29.66091 -28.77816 -28.14028 -24.78083 -24.22219 -23.16039 -22.27848 -21.92451 -21.83818 -20.06957 -19.54975 -18.86005 -17.90229 -16.79317 -16.58723 -16.24239 -15.79895 -15.28937 -15.06178 -14.61914 -14.55542 -14.25355 -14.20909 -13.97613 -13.84594 -13.54655 -13.12950 -12.99941 -12.79353 -12.43259 -12.20726 -11.89559 -11.88052 -11.75743 -11.46973 -11.25831 -11.13761 -10.88144 -10.76458 -10.69341 -10.14017 -9.96657 -9.92738 -9.80805 -9.63646 -9.56264 -9.41646 -8.58421 -8.48248 -8.34051 -7.89217 -6.81371 -5.67758 -3.01255 0.86260 1.40362 2.06467 2.75049 3.00880 3.39909 3.46194 3.49937 3.52045 3.77587 4.47477 4.54775 4.56688 4.65409 4.92446 4.96917 4.99718 5.07912 5.13060 5.28632 5.35999 5.43420 5.50394 5.54172 5.57111 5.65685 5.73795 5.81685 5.89797 5.97978 6.07472 6.12258 6.19055 6.22230 6.23540 6.33787 6.42342 6.45832 6.50137 6.55764 6.60978 6.78186 6.82375 6.91080 7.11279 7.15423 7.59170 7.63045 7.70381 7.84940 8.27243 8.47451 9.23405 9.86373 10.53234 11.44596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003000 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.473421 B = 9329.844550 C =10112.580654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.103 3.897 16 N -0.601 5.601 17 C 0.584 3.416 18 O -0.538 6.538 19 C -0.209 4.209 20 C 0.093 3.907 21 N -0.583 5.583 22 H 0.419 0.581 23 C 0.088 3.912 24 C -0.130 4.130 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.063 4.063 28 C -0.067 4.067 29 C 0.119 3.881 30 C 0.156 3.844 31 H 0.024 0.976 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.180 0.820 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 -24.451 1.124 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.158 4.158 15 C -0.021 4.021 16 N -0.334 5.334 17 C 0.372 3.628 18 O -0.415 6.415 19 C -0.220 4.220 20 C -0.038 4.038 21 N -0.185 5.185 22 H 0.256 0.744 23 C -0.017 4.017 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.161 4.161 27 C -0.082 4.082 28 C -0.072 4.072 29 C -0.003 4.003 30 C 0.047 3.953 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.197 0.803 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.088 0.912 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.243 -23.819 1.044 24.918 hybrid contribution 0.255 0.481 0.322 0.632 sum 7.497 -23.338 1.366 24.551 Atomic orbital electron populations 1.69936 1.04888 1.25130 1.57068 1.24775 0.95671 0.97620 1.02201 0.86223 0.78476 0.83205 0.78055 1.21095 1.21672 1.21101 1.19013 0.90445 0.82285 1.43829 0.90284 1.44162 1.01636 0.99200 1.86698 1.21539 0.83701 0.88466 1.00938 1.22731 0.96007 0.99684 0.99234 1.22281 0.97414 0.93466 1.00148 0.90495 1.21719 0.95329 0.97357 1.01348 1.21814 0.89394 0.92119 0.98737 1.48168 1.13715 1.07733 1.63768 1.17348 0.81879 0.86731 0.76822 1.90799 1.45995 1.54264 1.50437 1.20070 1.12763 0.93238 0.95883 1.22025 0.99193 0.83476 0.99091 1.41469 1.55256 1.09313 1.12421 0.74420 1.18213 1.02384 0.95099 0.86021 1.19981 1.03911 0.97942 0.93193 1.20812 0.99683 0.95865 0.95528 1.20958 1.02319 0.93070 0.99763 1.20649 0.96046 1.00187 0.91284 1.18740 1.02721 0.91449 0.94247 1.21712 0.98954 0.78258 1.01392 1.20995 0.91071 0.87533 0.95662 0.95891 0.93755 0.92650 0.94484 0.92297 0.92606 0.91042 0.91452 0.89862 0.91950 0.80324 0.86196 0.85661 0.85711 0.85445 0.91170 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.44 55.49 0.58 -26.64 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.38 9.88 -15.06 -0.15 -6.53 16 8 H 0.08 2.17 7.41 -52.49 -0.39 1.78 16 9 N -0.59 -15.08 3.35 -162.88 -0.55 -15.63 16 10 C 0.18 4.29 5.45 -1.91 -0.01 4.28 16 11 C -0.14 -2.53 6.54 -25.15 -0.16 -2.69 16 12 C -0.11 -1.93 2.62 -89.50 -0.23 -2.16 16 13 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 14 C -0.12 -1.55 5.70 -26.99 -0.15 -1.70 16 15 C 0.10 1.23 5.56 -3.73 -0.02 1.21 16 16 N -0.60 -9.62 3.01 -174.42 -0.53 -10.14 16 17 C 0.58 10.00 7.57 -12.75 -0.10 9.91 16 18 O -0.54 -11.40 16.50 5.22 0.09 -11.31 16 19 C -0.21 -2.85 5.23 -103.31 -0.54 -3.39 16 20 C 0.09 0.86 9.44 -16.62 -0.16 0.70 16 21 N -0.58 -4.52 5.99 -10.49 -0.06 -4.59 16 22 H 0.42 1.65 8.96 -40.82 -0.37 1.29 16 23 C 0.09 0.93 7.26 -83.97 -0.61 0.32 16 24 C -0.13 -1.15 10.07 -39.43 -0.40 -1.55 16 25 C -0.10 -0.89 10.01 -39.56 -0.40 -1.29 16 26 C -0.14 -1.51 10.03 -39.57 -0.40 -1.90 16 27 C -0.06 -0.84 10.09 -39.37 -0.40 -1.24 16 28 C -0.07 -0.91 6.36 -104.95 -0.67 -1.58 16 29 C 0.12 2.32 5.68 -3.94 -0.02 2.29 16 30 C 0.16 3.27 2.77 -67.80 -0.19 3.08 16 31 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.47 7.21 -51.93 -0.37 1.10 16 34 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 39 H 0.08 0.83 4.71 -51.93 -0.24 0.59 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.18 1.08 7.53 -52.49 -0.40 0.69 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 45 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.09 2.03 6.79 -51.93 -0.35 1.68 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -34.93 371.52 -11.30 -46.23 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.71 Total: 1.47 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.70 Total: -2.53 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.55 Total: -57.00 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.93 -11.30 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.660 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds