Wall clock time and date at job start Tue Mar 31 2020 23:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48502 * 109.46850 * 239.99989 * 3 2 1 5 5 H 1.48498 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46908 * 120.00220 * 3 2 1 7 7 C 1.38813 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.48163 * 126.39806 * 0.02562 * 9 7 2 11 11 C 1.55298 * 107.04341 * 184.97917 * 10 9 7 12 12 C 1.53703 * 101.81456 * 22.44425 * 11 10 9 13 13 H 1.09002 * 111.11215 * 78.61105 * 12 11 10 14 14 C 1.51979 * 114.99565 * 206.54711 * 12 11 10 15 15 C 1.53504 * 107.37009 * 175.28555 * 14 12 11 16 16 N 1.46590 * 110.93549 * 308.45299 * 15 14 12 17 17 C 1.34778 * 119.75418 * 227.68350 * 16 15 14 18 18 O 1.21669 * 120.00475 * 183.92839 * 17 16 15 19 19 C 1.46918 * 119.99799 * 3.92674 * 17 16 15 20 20 C 1.36374 * 126.76574 * 310.57138 * 19 17 16 21 21 N 1.35472 * 109.76552 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.78688 * 180.02562 * 21 20 19 23 23 C 1.37963 * 110.42972 * 359.97438 * 21 20 19 24 24 C 1.39120 * 133.19130 * 179.97438 * 23 21 20 25 25 C 1.37763 * 119.93054 * 180.02562 * 24 23 21 26 26 C 1.38761 * 120.63351 * 359.97438 * 25 24 23 27 27 C 1.37749 * 120.29973 * 0.02562 * 26 25 24 28 28 C 1.39278 * 119.67328 * 359.97438 * 27 26 25 29 29 C 1.47795 * 120.49126 * 47.39754 * 16 15 14 30 30 C 1.45507 * 126.39959 * 179.97438 * 9 7 2 31 31 H 1.08995 * 109.56610 * 265.86170 * 30 9 7 32 32 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.92110 * 304.32732 * 10 9 7 34 34 H 1.09002 * 109.91784 * 65.63707 * 10 9 7 35 35 H 1.09002 * 110.95949 * 140.57350 * 11 10 9 36 36 H 1.09000 * 110.96336 * 264.31318 * 11 10 9 37 37 H 1.08995 * 109.90016 * 294.87372 * 14 12 11 38 38 H 1.09003 * 109.89103 * 55.91073 * 14 12 11 39 39 H 1.08994 * 109.18865 * 188.01825 * 15 14 12 40 40 H 1.09006 * 109.05011 * 68.78791 * 15 14 12 41 41 H 1.07997 * 125.12083 * 359.97438 * 20 19 17 42 42 H 1.07994 * 120.03535 * 0.31656 * 24 23 21 43 43 H 1.07994 * 119.68564 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.84681 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.16461 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.06252 * 68.22154 * 29 16 15 47 47 H 1.09001 * 110.06661 * 189.67444 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1467 -2.5531 -0.0005 11 6 -0.4342 -4.0738 0.1283 12 6 0.8684 -4.5877 0.7620 13 1 0.8918 -4.3828 1.8324 14 6 1.1976 -6.0412 0.4641 15 6 2.5758 -6.3332 1.0739 16 7 3.5605 -5.3359 0.6443 17 6 4.7633 -5.7373 0.1874 18 8 5.6099 -4.9130 -0.1029 19 6 5.0523 -7.1702 0.0399 20 6 4.8494 -8.1440 0.9728 21 7 5.2354 -9.3432 0.4746 22 1 5.1853 -10.1842 0.9553 23 6 5.7088 -9.1998 -0.8133 24 6 6.2147 -10.0982 -1.7474 25 6 6.6195 -9.6480 -2.9849 26 6 6.5277 -8.3028 -3.3127 27 6 6.0295 -7.3979 -2.4014 28 6 5.6166 -7.8392 -1.1466 29 6 3.2419 -3.8939 0.7025 30 6 1.9082 -3.7213 -0.0016 31 1 1.9857 -4.0850 -1.0261 32 1 -0.4850 0.8401 0.0004 33 1 -0.5802 -2.0202 0.8457 34 1 -0.5629 -2.1744 -0.9341 35 1 -1.2853 -4.2555 0.7847 36 1 -0.5957 -4.5245 -0.8509 37 1 0.4467 -6.6913 0.9131 38 1 1.2295 -6.2009 -0.6137 39 1 2.9052 -7.3227 0.7572 40 1 2.4954 -6.3132 2.1608 41 1 4.4424 -7.9835 1.9601 42 1 6.2857 -11.1480 -1.5043 43 1 7.0112 -10.3489 -3.7071 44 1 6.8483 -7.9638 -4.2867 45 1 5.9594 -6.3513 -2.6587 46 1 3.1620 -3.5702 1.7403 47 1 4.0138 -3.3194 0.1904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042138305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:24 Heat of formation + Delta-G solvation = 40.617786 kcal Electronic energy + Delta-G solvation = -29640.910570 eV Core-core repulsion = 25788.904118 eV Total energy + Delta-G solvation = -3852.006452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49950 -41.15857 -39.48746 -37.88591 -36.79655 -34.66321 -33.21340 -32.81888 -31.24594 -30.46161 -30.30811 -29.41017 -26.55999 -25.77379 -23.97545 -23.56060 -23.08268 -22.65889 -21.80844 -21.09600 -19.92097 -18.88490 -18.52949 -17.74556 -17.26830 -16.90736 -16.77801 -16.31769 -16.01117 -15.90655 -15.65068 -15.31106 -15.22680 -14.87965 -14.67877 -14.63324 -14.32222 -14.01887 -13.80803 -13.52659 -13.42570 -13.13016 -13.06221 -12.75281 -12.66110 -12.59170 -12.48921 -12.13019 -12.02518 -11.93549 -11.77434 -11.54081 -11.34727 -11.07165 -11.00264 -10.73846 -10.62776 -9.67792 -9.25408 -8.92268 -8.70973 -7.87759 -5.22644 0.06317 0.60017 1.13892 1.42003 1.45065 1.51379 1.76820 2.05606 2.28954 2.48585 2.93799 3.30110 3.47555 3.66614 3.72713 3.86810 3.92214 3.95829 4.00712 4.20734 4.27398 4.29626 4.31715 4.40095 4.44782 4.55547 4.59687 4.62741 4.70458 4.76312 4.81301 4.84789 4.92390 4.94076 5.11323 5.12464 5.15645 5.25267 5.38810 5.45843 5.50623 5.54272 5.60817 5.63314 5.65646 5.70151 5.77480 6.13638 6.17929 6.46973 6.62506 7.07030 7.20259 7.75152 8.42195 9.22978 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003000 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.473421 B = 9329.844550 C =10112.580654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.110 4.110 15 C 0.097 3.903 16 N -0.598 5.598 17 C 0.581 3.419 18 O -0.599 6.599 19 C -0.265 4.265 20 C 0.139 3.861 21 N -0.557 5.557 22 H 0.443 0.557 23 C 0.081 3.919 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.110 4.110 28 C -0.097 4.097 29 C 0.132 3.868 30 C 0.148 3.852 31 H 0.000 1.000 32 H 0.248 0.752 33 H 0.025 0.975 34 H -0.003 1.003 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.222 0.778 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -29.732 3.008 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.024 4.024 16 N -0.330 5.330 17 C 0.372 3.628 18 O -0.481 6.481 19 C -0.275 4.275 20 C 0.005 3.995 21 N -0.160 5.160 22 H 0.285 0.715 23 C -0.025 4.025 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.158 4.158 27 C -0.129 4.129 28 C -0.102 4.102 29 C 0.008 3.992 30 C 0.040 3.960 31 H 0.017 0.983 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.239 0.761 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.154 0.846 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.156 -29.204 2.942 30.211 hybrid contribution 0.329 2.050 -0.335 2.103 sum 7.485 -27.154 2.607 28.287 Atomic orbital electron populations 1.70140 1.06019 1.25356 1.58119 1.25547 0.96590 1.00645 1.02577 0.85260 0.77308 0.79328 0.78126 1.21005 1.21409 1.20194 1.19268 0.90551 0.83893 1.43184 0.90978 1.44436 1.02619 1.00267 1.86496 1.21368 0.82791 0.92611 0.97595 1.22609 0.97839 0.94781 1.00808 1.22218 0.94364 0.95392 0.99440 0.90022 1.21728 0.97119 0.94696 1.01318 1.22200 0.87580 0.91997 1.00597 1.48212 1.14524 1.06647 1.63600 1.17971 0.81287 0.88168 0.75381 1.90750 1.48013 1.56339 1.52999 1.19793 1.17707 0.91808 0.98227 1.22487 0.95480 0.82507 0.99034 1.41442 1.53263 1.09962 1.11370 0.71498 1.18348 1.02894 0.93863 0.87366 1.20463 1.01288 0.99489 0.92240 1.21214 0.99339 0.95235 0.96613 1.21202 1.01063 0.93902 0.99626 1.20601 0.99800 0.99242 0.93215 1.19022 1.03407 0.93451 0.94282 1.21259 0.96790 0.80807 1.00339 1.21121 0.93345 0.86273 0.95300 0.98254 0.94280 0.95648 0.98449 0.89224 0.91569 0.86465 0.92554 0.86982 0.88634 0.76137 0.82251 0.82319 0.84598 0.89058 0.91182 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 10.44 21.65 0.23 -58.35 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 4 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.24 -14.25 9.88 84.04 0.83 -13.42 16 8 H 0.07 4.26 7.41 -2.91 -0.02 4.24 16 9 N -0.61 -32.98 3.35 -669.23 -2.24 -35.22 16 10 C 0.18 9.12 5.45 86.85 0.47 9.60 16 11 C -0.12 -4.34 6.54 31.62 0.21 -4.14 16 12 C -0.09 -3.06 2.62 -10.07 -0.03 -3.09 16 13 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 14 C -0.11 -2.46 5.70 30.43 0.17 -2.29 16 15 C 0.10 1.96 5.56 86.53 0.48 2.45 16 16 N -0.60 -19.17 3.01 -823.98 -2.48 -21.66 16 17 C 0.58 20.75 7.57 86.52 0.65 21.41 16 18 O -0.60 -27.90 16.50 -4.25 -0.07 -27.97 16 19 C -0.26 -7.03 5.23 -19.01 -0.10 -7.13 16 20 C 0.14 1.97 9.44 83.70 0.79 2.76 16 21 N -0.56 -5.86 5.99 -187.09 -1.12 -6.98 16 22 H 0.44 0.65 8.96 -92.71 -0.83 -0.18 16 23 C 0.08 1.46 7.26 38.91 0.28 1.74 16 24 C -0.11 -1.56 10.07 22.37 0.23 -1.34 16 25 C -0.11 -1.59 10.01 22.28 0.22 -1.36 16 26 C -0.14 -2.96 10.03 22.28 0.22 -2.74 16 27 C -0.11 -3.19 10.09 22.40 0.23 -2.96 16 28 C -0.10 -2.64 6.36 -20.08 -0.13 -2.77 16 29 C 0.13 5.42 5.68 85.74 0.49 5.90 16 30 C 0.15 6.42 2.77 45.61 0.13 6.55 16 31 H 0.00 0.00 7.90 -2.39 -0.02 -0.02 16 32 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.03 1.41 7.21 -2.39 -0.02 1.39 16 34 H 0.00 -0.16 7.77 -2.39 -0.02 -0.18 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.43 7.97 -2.39 -0.02 1.41 16 39 H 0.11 1.68 4.71 -2.39 -0.01 1.67 16 40 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.22 1.21 7.53 -2.91 -0.02 1.19 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.09 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 47 H 0.05 2.46 6.79 -2.39 -0.02 2.44 16 Total: -1.00 -88.02 371.52 2.12 -85.90 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.16 Total: 7.86 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.61 Total: 6.05 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.62 Total: -122.20 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.07 Total: -27.97 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -88.02 2.12 -85.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.516 kcal (2) G-P(sol) polarization free energy of solvation -88.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds