Wall clock time and date at job start Tue Mar 31 2020 23:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48506 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47622 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.47129 * 60.00791 * 3 2 1 7 7 C 1.38806 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.47547 * 125.85552 * 0.02562 * 9 7 2 11 11 C 1.55062 * 104.85253 * 156.09674 * 10 9 7 12 12 C 1.55056 * 101.27165 * 35.96642 * 11 10 9 13 13 H 1.09003 * 106.68383 * 78.30390 * 12 11 10 14 14 C 1.48862 * 111.54921 * 194.53703 * 12 11 10 15 15 C 1.50605 * 117.90780 * 101.50849 * 14 12 11 16 16 N 1.45236 * 112.83394 * 27.69229 * 15 14 12 17 17 C 1.34773 * 119.33829 * 135.99575 * 16 15 14 18 18 O 1.21669 * 119.99856 * 175.78597 * 17 16 15 19 19 C 1.46917 * 120.00379 * 355.77863 * 17 16 15 20 20 C 1.36370 * 126.76283 * 48.78185 * 19 17 16 21 21 N 1.35479 * 109.76861 * 179.97438 * 20 19 17 22 22 H 0.96994 * 124.78875 * 180.02562 * 21 20 19 23 23 C 1.37964 * 110.42237 * 0.02562 * 21 20 19 24 24 C 1.39120 * 133.18514 * 180.02562 * 23 21 20 25 25 C 1.37777 * 119.92466 * 179.21318 * 24 23 21 26 26 C 1.38749 * 120.63155 * 0.65911 * 25 24 23 27 27 C 1.37756 * 120.30715 * 359.55551 * 26 25 24 28 28 C 1.39275 * 119.66465 * 0.02562 * 27 26 25 29 29 C 1.44671 * 120.74404 * 315.60313 * 16 15 14 30 30 C 1.47618 * 125.85602 * 180.02562 * 9 7 2 31 31 H 1.09005 * 108.10914 * 64.74882 * 30 9 7 32 32 H 0.97008 * 120.00031 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.36349 * 37.25062 * 10 9 7 34 34 H 1.09008 * 110.45754 * 274.98368 * 10 9 7 35 35 H 1.08998 * 111.07494 * 153.98151 * 11 10 9 36 36 H 1.09007 * 111.06471 * 277.96073 * 11 10 9 37 37 H 1.08994 * 107.75991 * 223.64920 * 14 12 11 38 38 H 1.08999 * 107.74958 * 339.42375 * 14 12 11 39 39 H 1.09000 * 108.80772 * 148.55506 * 15 14 12 40 40 H 1.08997 * 108.81067 * 266.82636 * 15 14 12 41 41 H 1.07999 * 125.11772 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.03715 * 359.96611 * 24 23 21 43 43 H 1.07996 * 119.68149 * 180.21376 * 25 24 23 44 44 H 1.08003 * 119.84626 * 179.57852 * 26 25 24 45 45 H 1.07996 * 120.16560 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.26103 * 288.39618 * 29 16 15 47 47 H 1.09001 * 108.17628 * 170.06240 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5386 -0.0005 11 6 -0.3978 -3.9423 -0.6078 12 6 0.8020 -4.7421 -0.0379 13 1 0.5548 -4.9828 0.9961 14 6 0.9826 -6.0376 -0.7487 15 6 2.0703 -6.1264 -1.7866 16 7 3.1702 -5.2134 -1.5300 17 6 4.4375 -5.6513 -1.6665 18 8 5.3665 -4.8777 -1.5296 19 6 4.6972 -7.0629 -1.9805 20 6 4.1068 -7.8026 -2.9623 21 7 4.6026 -9.0634 -2.9468 22 1 4.3341 -9.7710 -3.5534 23 6 5.5431 -9.1986 -1.9466 24 6 6.3310 -10.2621 -1.5181 25 6 7.2137 -10.0869 -0.4748 26 6 7.3168 -8.8604 0.1656 27 6 6.5420 -7.7965 -0.2412 28 6 5.6518 -7.9572 -1.3002 29 6 2.9184 -3.8433 -1.1395 30 6 1.9293 -3.7351 -0.0005 31 1 2.4712 -3.8635 0.9365 32 1 -0.4850 0.8401 0.0004 33 1 -0.6026 -1.7681 -0.6191 34 1 -0.5303 -2.4892 1.0169 35 1 -1.3447 -4.3540 -0.2585 36 1 -0.3652 -3.9098 -1.6969 37 1 1.1757 -6.8043 0.0015 38 1 0.0389 -6.2841 -1.2351 39 1 2.4564 -7.1456 -1.8047 40 1 1.6437 -5.8971 -2.7631 41 1 3.3570 -7.4383 -3.6488 42 1 6.2597 -11.2206 -2.0106 43 1 7.8259 -10.9142 -0.1476 44 1 8.0081 -8.7391 0.9865 45 1 6.6239 -6.8429 0.2591 46 1 2.5333 -3.2902 -1.9962 47 1 3.8642 -3.3987 -0.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042138306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:30 Heat of formation + Delta-G solvation = 66.092325 kcal Electronic energy + Delta-G solvation = -29657.707865 eV Core-core repulsion = 25806.806072 eV Total energy + Delta-G solvation = -3850.901793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68323 -39.90202 -38.01028 -37.11457 -35.35885 -33.10009 -32.32185 -31.49148 -29.88545 -29.65558 -28.79122 -28.24284 -25.09943 -24.41914 -23.16809 -22.48681 -22.11524 -21.88842 -20.34875 -19.35886 -18.29536 -17.25367 -16.96951 -16.76690 -16.35638 -15.76865 -15.39925 -15.13324 -14.92601 -14.66889 -14.42748 -14.27646 -13.99405 -13.82442 -13.65734 -13.27206 -12.99851 -12.47189 -12.36617 -12.20004 -11.90981 -11.80331 -11.64482 -11.58482 -11.35953 -11.14972 -10.91477 -10.82901 -10.68853 -10.03950 -9.99889 -9.91447 -9.81398 -9.61125 -9.55704 -9.37275 -8.65049 -8.48799 -8.21278 -7.89019 -6.84938 -5.63587 -3.05259 0.85667 1.39514 2.05961 2.75289 3.05445 3.43368 3.47503 3.50165 3.53034 3.77341 4.47280 4.50708 4.56428 4.67507 4.91194 4.92816 5.01088 5.07650 5.12843 5.25556 5.35184 5.39151 5.50075 5.52139 5.53944 5.63408 5.68937 5.86419 5.89500 5.99893 6.03033 6.13851 6.22401 6.25375 6.32291 6.33624 6.44060 6.50136 6.53471 6.64952 6.66003 6.90015 6.91062 6.95775 7.10499 7.15776 7.53368 7.67760 7.75438 7.86887 8.35935 8.51262 9.23727 9.83822 10.48258 11.40586 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.002951 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.294091 B = 9487.542249 C =10341.012123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.594 5.594 10 C 0.151 3.849 11 C -0.141 4.141 12 C -0.090 4.090 13 H 0.059 0.941 14 C -0.111 4.111 15 C 0.106 3.894 16 N -0.589 5.589 17 C 0.582 3.418 18 O -0.538 6.538 19 C -0.209 4.209 20 C 0.094 3.906 21 N -0.583 5.583 22 H 0.419 0.581 23 C 0.088 3.912 24 C -0.129 4.129 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.063 4.063 28 C -0.067 4.067 29 C 0.106 3.894 30 C 0.165 3.835 31 H 0.026 0.974 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.180 0.820 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.068 0.932 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -23.969 -5.734 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.319 5.319 10 C 0.026 3.974 11 C -0.180 4.180 12 C -0.109 4.109 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.018 4.018 16 N -0.321 5.321 17 C 0.370 3.630 18 O -0.415 6.415 19 C -0.220 4.220 20 C -0.037 4.037 21 N -0.185 5.185 22 H 0.256 0.744 23 C -0.017 4.017 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.161 4.161 27 C -0.082 4.082 28 C -0.071 4.071 29 C -0.018 4.018 30 C 0.057 3.943 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.197 0.803 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.086 0.914 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.088 -23.352 -5.702 24.797 hybrid contribution 0.108 0.491 -0.230 0.553 sum 6.196 -22.861 -5.932 24.417 Atomic orbital electron populations 1.69825 1.04880 1.24635 1.57747 1.24767 0.95706 0.97674 1.02386 0.86018 0.78909 0.83597 0.77176 1.20339 1.21771 1.21799 1.19142 0.90642 0.82188 1.42839 0.90237 1.44769 1.01734 0.98947 1.86412 1.21947 0.84519 0.92675 0.98254 1.23207 0.95714 0.99068 0.99988 1.20437 0.97077 0.93663 0.99719 0.92221 1.20391 0.98525 0.97845 0.98217 1.20986 0.88120 0.94183 0.98481 1.46992 1.05034 1.12696 1.67343 1.17368 0.82643 0.85964 0.77055 1.90793 1.43174 1.56387 1.51133 1.20056 1.04259 0.94542 1.03125 1.22064 0.98479 0.83540 0.99591 1.41479 1.35430 1.11503 1.30043 0.74398 1.18217 0.94921 0.96115 0.92476 1.19989 0.98367 0.96629 1.00015 1.20811 0.97984 0.97557 0.95573 1.20952 1.00997 0.92905 1.01287 1.20641 0.93682 0.99196 0.94664 1.18740 0.98534 0.91823 0.98035 1.21437 1.01396 0.79693 0.99317 1.19973 0.92111 0.86943 0.95321 0.95617 0.93846 0.87740 0.96922 0.92407 0.92316 0.92595 0.91070 0.89876 0.92454 0.80262 0.86188 0.85670 0.85735 0.85455 0.91367 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.12 55.49 0.56 -26.27 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.22 -6.13 9.77 -15.06 -0.15 -6.28 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.59 -15.06 3.16 -164.74 -0.52 -15.58 16 10 C 0.15 3.61 5.91 -2.38 -0.01 3.60 16 11 C -0.14 -2.58 6.24 -24.55 -0.15 -2.73 16 12 C -0.09 -1.55 2.63 -92.46 -0.24 -1.79 16 13 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 14 C -0.11 -1.45 5.55 -29.96 -0.17 -1.62 16 15 C 0.11 1.32 5.46 -5.92 -0.03 1.29 16 16 N -0.59 -9.72 3.03 -180.10 -0.55 -10.27 16 17 C 0.58 10.09 7.55 -12.75 -0.10 9.99 16 18 O -0.54 -11.49 16.41 5.22 0.09 -11.41 16 19 C -0.21 -2.88 5.21 -103.31 -0.54 -3.41 16 20 C 0.09 0.89 9.45 -16.61 -0.16 0.73 16 21 N -0.58 -4.56 5.99 -10.48 -0.06 -4.62 16 22 H 0.42 1.68 8.96 -40.82 -0.37 1.32 16 23 C 0.09 0.93 7.26 -83.97 -0.61 0.32 16 24 C -0.13 -1.14 10.07 -39.42 -0.40 -1.54 16 25 C -0.10 -0.88 10.01 -39.56 -0.40 -1.28 16 26 C -0.14 -1.48 10.03 -39.57 -0.40 -1.87 16 27 C -0.06 -0.83 10.09 -39.37 -0.40 -1.23 16 28 C -0.07 -0.90 6.36 -104.96 -0.67 -1.57 16 29 C 0.11 2.13 5.46 -5.91 -0.03 2.10 16 30 C 0.16 3.48 3.29 -69.11 -0.23 3.25 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.10 2.82 5.91 -51.93 -0.31 2.51 16 34 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 38 H 0.07 0.79 7.65 -51.93 -0.40 0.40 16 39 H 0.08 0.86 4.74 -51.93 -0.25 0.61 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.18 1.15 7.48 -52.49 -0.39 0.76 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.07 1.48 8.07 -51.93 -0.42 1.06 16 47 H 0.08 1.91 6.85 -51.93 -0.36 1.55 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -34.46 370.35 -11.37 -45.83 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.68 Total: 1.71 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -4.77 Total: -2.42 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.57 Total: -56.73 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.46 -11.37 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.919 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds