Wall clock time and date at job start Tue Mar 31 2020 23:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48506 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47622 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.47129 * 60.00791 * 3 2 1 7 7 C 1.38806 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.47547 * 125.85552 * 0.02562 * 9 7 2 11 11 C 1.55062 * 104.85253 * 156.09674 * 10 9 7 12 12 C 1.55056 * 101.27165 * 35.96642 * 11 10 9 13 13 H 1.09003 * 106.68383 * 78.30390 * 12 11 10 14 14 C 1.48862 * 111.54921 * 194.53703 * 12 11 10 15 15 C 1.50605 * 117.90780 * 101.50849 * 14 12 11 16 16 N 1.45236 * 112.83394 * 27.69229 * 15 14 12 17 17 C 1.34773 * 119.33829 * 135.99575 * 16 15 14 18 18 O 1.21669 * 119.99856 * 175.78597 * 17 16 15 19 19 C 1.46917 * 120.00379 * 355.77863 * 17 16 15 20 20 C 1.36370 * 126.76283 * 48.78185 * 19 17 16 21 21 N 1.35479 * 109.76861 * 179.97438 * 20 19 17 22 22 H 0.96994 * 124.78875 * 180.02562 * 21 20 19 23 23 C 1.37964 * 110.42237 * 0.02562 * 21 20 19 24 24 C 1.39120 * 133.18514 * 180.02562 * 23 21 20 25 25 C 1.37777 * 119.92466 * 179.21318 * 24 23 21 26 26 C 1.38749 * 120.63155 * 0.65911 * 25 24 23 27 27 C 1.37756 * 120.30715 * 359.55551 * 26 25 24 28 28 C 1.39275 * 119.66465 * 0.02562 * 27 26 25 29 29 C 1.44671 * 120.74404 * 315.60313 * 16 15 14 30 30 C 1.47618 * 125.85602 * 180.02562 * 9 7 2 31 31 H 1.09005 * 108.10914 * 64.74882 * 30 9 7 32 32 H 0.97008 * 120.00031 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.36349 * 37.25062 * 10 9 7 34 34 H 1.09008 * 110.45754 * 274.98368 * 10 9 7 35 35 H 1.08998 * 111.07494 * 153.98151 * 11 10 9 36 36 H 1.09007 * 111.06471 * 277.96073 * 11 10 9 37 37 H 1.08994 * 107.75991 * 223.64920 * 14 12 11 38 38 H 1.08999 * 107.74958 * 339.42375 * 14 12 11 39 39 H 1.09000 * 108.80772 * 148.55506 * 15 14 12 40 40 H 1.08997 * 108.81067 * 266.82636 * 15 14 12 41 41 H 1.07999 * 125.11772 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.03715 * 359.96611 * 24 23 21 43 43 H 1.07996 * 119.68149 * 180.21376 * 25 24 23 44 44 H 1.08003 * 119.84626 * 179.57852 * 26 25 24 45 45 H 1.07996 * 120.16560 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.26103 * 288.39618 * 29 16 15 47 47 H 1.09001 * 108.17628 * 170.06240 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5386 -0.0005 11 6 -0.3978 -3.9423 -0.6078 12 6 0.8020 -4.7421 -0.0379 13 1 0.5548 -4.9828 0.9961 14 6 0.9826 -6.0376 -0.7487 15 6 2.0703 -6.1264 -1.7866 16 7 3.1702 -5.2134 -1.5300 17 6 4.4375 -5.6513 -1.6665 18 8 5.3665 -4.8777 -1.5296 19 6 4.6972 -7.0629 -1.9805 20 6 4.1068 -7.8026 -2.9623 21 7 4.6026 -9.0634 -2.9468 22 1 4.3341 -9.7710 -3.5534 23 6 5.5431 -9.1986 -1.9466 24 6 6.3310 -10.2621 -1.5181 25 6 7.2137 -10.0869 -0.4748 26 6 7.3168 -8.8604 0.1656 27 6 6.5420 -7.7965 -0.2412 28 6 5.6518 -7.9572 -1.3002 29 6 2.9184 -3.8433 -1.1395 30 6 1.9293 -3.7351 -0.0005 31 1 2.4712 -3.8635 0.9365 32 1 -0.4850 0.8401 0.0004 33 1 -0.6026 -1.7681 -0.6191 34 1 -0.5303 -2.4892 1.0169 35 1 -1.3447 -4.3540 -0.2585 36 1 -0.3652 -3.9098 -1.6969 37 1 1.1757 -6.8043 0.0015 38 1 0.0389 -6.2841 -1.2351 39 1 2.4564 -7.1456 -1.8047 40 1 1.6437 -5.8971 -2.7631 41 1 3.3570 -7.4383 -3.6488 42 1 6.2597 -11.2206 -2.0106 43 1 7.8259 -10.9142 -0.1476 44 1 8.0081 -8.7391 0.9865 45 1 6.6239 -6.8429 0.2591 46 1 2.5333 -3.2902 -1.9962 47 1 3.8642 -3.3987 -0.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042138306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:29 Heat of formation + Delta-G solvation = 43.981023 kcal Electronic energy + Delta-G solvation = -29658.666683 eV Core-core repulsion = 25806.806072 eV Total energy + Delta-G solvation = -3851.860611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.53413 -41.24276 -39.52640 -37.88961 -36.87769 -34.84148 -33.43491 -32.96955 -31.18380 -30.46391 -30.35157 -29.53047 -26.72558 -26.07175 -24.05819 -23.76257 -23.29057 -22.67318 -22.17140 -20.60601 -19.24800 -18.96056 -18.40914 -17.92854 -17.29607 -16.94339 -16.83345 -16.49077 -16.34802 -16.11382 -15.58748 -15.35812 -15.24415 -14.90785 -14.71333 -14.64355 -14.19552 -14.13700 -13.60688 -13.47994 -13.42535 -13.33486 -12.98866 -12.75741 -12.68255 -12.58806 -12.55319 -12.21473 -11.99434 -11.94360 -11.70837 -11.43967 -11.35426 -11.08427 -10.99390 -10.77141 -10.61684 -9.61433 -9.25229 -8.92680 -8.71149 -7.80821 -5.24795 0.06178 0.60254 1.12321 1.42831 1.43094 1.54348 1.82234 2.05002 2.32314 2.46761 2.94226 3.27946 3.56337 3.60261 3.72510 3.79965 3.83559 3.91895 4.03686 4.21273 4.25597 4.29748 4.33501 4.39859 4.44546 4.48239 4.60210 4.65847 4.72397 4.77829 4.81346 4.92328 4.95207 4.99411 5.10325 5.13499 5.18205 5.35291 5.45222 5.46011 5.53633 5.54827 5.60927 5.64156 5.69054 5.71673 5.82098 6.13887 6.29105 6.48658 6.61973 7.09064 7.20720 7.73974 8.37781 9.20834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.002951 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.294091 B = 9487.542249 C =10341.012123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.614 5.614 10 C 0.149 3.851 11 C -0.121 4.121 12 C -0.079 4.079 13 H 0.057 0.943 14 C -0.111 4.111 15 C 0.098 3.902 16 N -0.588 5.588 17 C 0.579 3.421 18 O -0.598 6.598 19 C -0.264 4.264 20 C 0.138 3.862 21 N -0.557 5.557 22 H 0.443 0.557 23 C 0.081 3.919 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.109 4.109 28 C -0.096 4.096 29 C 0.127 3.873 30 C 0.163 3.837 31 H -0.003 1.003 32 H 0.248 0.752 33 H 0.073 0.927 34 H -0.015 1.015 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.220 0.780 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.137 0.863 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -28.839 -7.988 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.023 4.023 16 N -0.319 5.319 17 C 0.370 3.630 18 O -0.480 6.480 19 C -0.274 4.274 20 C 0.004 3.996 21 N -0.160 5.160 22 H 0.285 0.715 23 C -0.025 4.025 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.127 4.127 28 C -0.101 4.101 29 C 0.002 3.998 30 C 0.056 3.944 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.003 0.997 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.237 0.763 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.155 0.845 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.184 -28.317 -7.976 29.872 hybrid contribution 0.450 1.941 0.512 2.058 sum 5.634 -26.376 -7.464 27.984 Atomic orbital electron populations 1.70049 1.05848 1.24969 1.58437 1.25508 0.96639 1.00498 1.02614 0.85086 0.77833 0.79819 0.77085 1.20064 1.21229 1.21577 1.19312 0.90516 0.83853 1.42656 0.91404 1.45022 1.02735 0.99836 1.86261 1.21804 0.83461 0.95779 0.96542 1.23068 0.97563 0.95060 1.00245 1.20421 0.94376 0.94429 1.00637 0.92400 1.20417 1.00592 0.95049 0.98855 1.21390 0.86662 0.94688 0.99580 1.47018 1.06390 1.11560 1.66895 1.18007 0.81918 0.87344 0.75685 1.90744 1.44988 1.58352 1.53902 1.19753 1.07908 0.92926 1.06852 1.22487 0.96746 0.83093 0.97225 1.41447 1.33821 1.11549 1.29209 0.71506 1.18357 0.95876 0.95328 0.92909 1.20467 0.96481 0.97475 0.99085 1.21220 0.98351 0.97465 0.95330 1.21205 1.00108 0.93003 1.01413 1.20606 0.96541 0.99059 0.96541 1.19012 0.98864 0.93515 0.98689 1.20804 0.98854 0.82166 0.98006 1.20100 0.93600 0.86543 0.94193 0.98477 0.94196 0.90889 0.99668 0.89063 0.91238 0.91030 0.87336 0.86894 0.89747 0.76347 0.82296 0.82310 0.84491 0.88866 0.93081 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 10.12 21.65 0.22 -56.90 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 3 Si 0.97 48.05 29.55 68.60 2.03 50.08 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.23 -13.87 9.77 84.03 0.82 -13.05 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.61 -32.84 3.16 -675.11 -2.13 -34.97 16 10 C 0.15 7.38 5.91 86.88 0.51 7.90 16 11 C -0.12 -4.22 6.24 32.00 0.20 -4.02 16 12 C -0.08 -2.64 2.63 -11.99 -0.03 -2.67 16 13 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 14 C -0.11 -2.46 5.55 28.50 0.16 -2.31 16 15 C 0.10 2.11 5.46 85.84 0.47 2.58 16 16 N -0.59 -19.60 3.03 -841.95 -2.55 -22.15 16 17 C 0.58 21.01 7.55 86.52 0.65 21.67 16 18 O -0.60 -28.11 16.41 -4.25 -0.07 -28.18 16 19 C -0.26 -7.06 5.21 -19.02 -0.10 -7.16 16 20 C 0.14 2.04 9.45 83.69 0.79 2.83 16 21 N -0.56 -5.96 5.99 -187.08 -1.12 -7.08 16 22 H 0.44 0.76 8.96 -92.71 -0.83 -0.07 16 23 C 0.08 1.44 7.26 38.91 0.28 1.72 16 24 C -0.12 -1.53 10.07 22.37 0.23 -1.31 16 25 C -0.10 -1.52 10.01 22.28 0.22 -1.30 16 26 C -0.14 -2.84 10.03 22.28 0.22 -2.62 16 27 C -0.11 -3.07 10.09 22.41 0.23 -2.84 16 28 C -0.10 -2.59 6.36 -20.08 -0.13 -2.72 16 29 C 0.13 5.48 5.46 86.14 0.47 5.95 16 30 C 0.16 7.23 3.29 43.62 0.14 7.38 16 31 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 33 H 0.07 4.10 5.91 -2.39 -0.01 4.08 16 34 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.11 1.73 7.65 -2.39 -0.02 1.71 16 39 H 0.11 1.79 4.74 -2.39 -0.01 1.78 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.22 1.44 7.48 -2.91 -0.02 1.42 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.09 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.05 2.34 8.07 -2.39 -0.02 2.32 16 47 H 0.04 2.24 6.85 -2.39 -0.02 2.23 16 Total: -1.00 -86.21 370.35 2.15 -84.06 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.17 Total: 8.15 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.61 Total: 6.99 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -5.58 Total: -121.11 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.07 Total: -28.18 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -86.21 2.15 -84.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042138306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.041 kcal (2) G-P(sol) polarization free energy of solvation -86.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds