Wall clock time and date at job start Tue Mar 31 2020 23:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99553 * 2 1 4 4 H 1.48498 * 109.46735 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46952 * 299.99898 * 3 2 1 6 6 H 1.48496 * 109.47168 * 60.00378 * 3 2 1 7 7 C 1.38808 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06270 * 359.96112 * 9 7 2 11 11 C 1.54497 * 107.14827 * 181.66245 * 10 9 7 12 12 C 1.56027 * 102.61524 * 22.83900 * 11 10 9 13 13 H 1.08992 * 112.85803 * 202.93213 * 12 11 10 14 14 C 1.53095 * 106.39245 * 78.38237 * 12 11 10 15 15 C 1.53336 * 110.49767 * 195.28943 * 14 12 11 16 16 N 1.47152 * 107.71387 * 57.57007 * 15 14 12 17 17 C 1.34783 * 121.20903 * 122.68768 * 16 15 14 18 18 O 1.21647 * 120.00104 * 359.80348 * 17 16 15 19 19 C 1.47063 * 119.99844 * 179.80480 * 17 16 15 20 20 C 1.35865 * 125.42901 * 151.01352 * 19 17 16 21 21 C 1.41595 * 107.72317 * 180.26320 * 20 19 17 22 22 C 1.40104 * 133.37401 * 179.76209 * 21 20 19 23 23 C 1.36437 * 119.82839 * 179.97438 * 22 21 20 24 24 C 1.38946 * 120.61672 * 359.97438 * 23 22 21 25 25 C 1.37677 * 120.64485 * 359.67300 * 24 23 22 26 26 C 1.39224 * 119.80997 * 0.53381 * 25 24 23 27 27 N 1.37485 * 133.18160 * 179.32544 * 26 25 24 28 28 H 0.97000 * 125.60316 * 359.97438 * 27 26 25 29 29 C 1.46753 * 117.57585 * 302.42271 * 16 15 14 30 30 C 1.46466 * 126.06017 * 179.97438 * 9 7 2 31 31 H 1.08996 * 108.42866 * 269.20348 * 30 9 7 32 32 H 0.96998 * 120.00064 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.89510 * 301.04220 * 10 9 7 34 34 H 1.09001 * 109.90082 * 62.09704 * 10 9 7 35 35 H 1.09005 * 110.78109 * 141.12474 * 11 10 9 36 36 H 1.09000 * 110.77895 * 264.36919 * 11 10 9 37 37 H 1.08995 * 109.25809 * 315.69874 * 14 12 11 38 38 H 1.09002 * 109.25618 * 75.17466 * 14 12 11 39 39 H 1.09007 * 109.91305 * 298.02867 * 15 14 12 40 40 H 1.08994 * 109.86907 * 177.10018 * 15 14 12 41 41 H 1.07992 * 126.14197 * 359.97438 * 20 19 17 42 42 H 1.07996 * 120.08481 * 0.02562 * 22 21 20 43 43 H 1.07992 * 119.69522 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.67777 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.09420 * 179.89547 * 25 24 23 46 46 H 1.09000 * 109.22929 * 173.10377 * 29 16 15 47 47 H 1.09003 * 109.22767 * 292.46299 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1405 -2.5438 0.0008 11 6 -0.4375 -4.0593 0.0431 12 6 0.8728 -4.6465 0.6536 13 1 1.0220 -5.6971 0.4049 14 6 0.7987 -4.3919 2.1615 15 6 2.1772 -4.5799 2.8061 16 7 3.1120 -3.6585 2.1407 17 6 3.8053 -2.7399 2.8421 18 8 3.6613 -2.6591 4.0473 19 6 4.7358 -1.8352 2.1504 20 6 5.0586 -0.5786 2.5538 21 6 5.9756 -0.0468 1.6150 22 6 6.6388 1.1827 1.5080 23 6 7.4856 1.4082 0.4623 24 6 7.6984 0.4287 -0.4999 25 6 7.0640 -0.7901 -0.4129 26 6 6.1918 -1.0425 0.6425 27 7 5.4209 -2.1275 0.9870 28 1 5.3666 -2.9610 0.4938 29 6 3.2664 -3.7804 0.6864 30 6 1.9200 -3.7267 -0.0016 31 1 2.0459 -4.0469 -1.0358 32 1 -0.4850 0.8400 0.0004 33 1 -0.5643 -2.0579 0.8797 34 1 -0.5610 -2.1055 -0.9043 35 1 -1.2918 -4.2682 0.6871 36 1 -0.6079 -4.4481 -0.9609 37 1 0.4526 -3.3735 2.3375 38 1 0.0953 -5.0932 2.6103 39 1 2.5136 -5.6078 2.6701 40 1 2.1239 -4.3464 3.8694 41 1 4.6799 -0.0739 3.4302 42 1 6.4807 1.9496 2.2518 43 1 7.9954 2.3569 0.3817 44 1 8.3717 0.6236 -1.3215 45 1 7.2346 -1.5444 -1.1667 46 1 3.8885 -2.9631 0.3217 47 1 3.7499 -4.7295 0.4550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042346400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:39 Heat of formation + Delta-G solvation = 76.865527 kcal Electronic energy + Delta-G solvation = -31361.263428 eV Core-core repulsion = 27510.828796 eV Total energy + Delta-G solvation = -3850.434632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49397 -39.76603 -38.13423 -36.58224 -34.98810 -33.10852 -31.96889 -31.36605 -29.57122 -29.19444 -28.67849 -28.30011 -25.06582 -24.18767 -23.59125 -22.18678 -21.79708 -20.80274 -20.07228 -19.78552 -18.71527 -17.47034 -17.16233 -16.53126 -15.78962 -15.59780 -15.25505 -14.80187 -14.49162 -14.28432 -14.08603 -13.92653 -13.83827 -13.63188 -13.37326 -12.90362 -12.78949 -12.71627 -12.61999 -12.06960 -11.74171 -11.57664 -11.50771 -11.42150 -11.22976 -10.91926 -10.84876 -10.74310 -10.73990 -10.20509 -9.99957 -9.87395 -9.71097 -9.64772 -9.61287 -9.55387 -8.59465 -8.34838 -7.96472 -7.51097 -6.84419 -5.71092 -3.04378 1.07065 1.83549 2.42984 3.07913 3.21098 3.43130 3.51292 3.56891 3.72887 4.13307 4.51200 4.72855 4.87672 4.91665 5.16258 5.19744 5.26209 5.28407 5.39092 5.48824 5.49894 5.59585 5.60521 5.63909 5.70235 5.73686 5.83034 5.88477 5.93208 6.03592 6.14325 6.17165 6.20762 6.23554 6.28148 6.46241 6.56043 6.57668 6.62756 6.73742 6.79739 6.87588 6.93679 6.94928 7.29305 7.54272 7.57320 7.58746 7.69257 7.81936 8.23031 8.41198 9.19814 9.82471 10.46814 11.40715 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.005743 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.450424 B = 4874.435158 C = 6114.835807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.000 4.000 3 Si 0.893 3.107 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.587 5.587 10 C 0.178 3.822 11 C -0.143 4.143 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.116 3.884 16 N -0.588 5.588 17 C 0.595 3.405 18 O -0.538 6.538 19 C 0.047 3.953 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.062 4.062 23 C -0.154 4.154 24 C -0.096 4.096 25 C -0.130 4.130 26 C 0.110 3.890 27 N -0.577 5.577 28 H 0.419 0.581 29 C 0.084 3.916 30 C 0.156 3.844 31 H 0.027 0.973 32 H 0.250 0.750 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.096 0.904 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -7.650 0.066 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.197 4.197 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.313 5.313 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.006 4.006 16 N -0.319 5.319 17 C 0.383 3.617 18 O -0.415 6.415 19 C -0.061 4.061 20 C -0.142 4.142 21 C -0.113 4.113 22 C -0.081 4.081 23 C -0.173 4.173 24 C -0.116 4.116 25 C -0.150 4.150 26 C 0.000 4.000 27 N -0.187 5.187 28 H 0.262 0.738 29 C -0.041 4.041 30 C 0.047 3.953 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.168 0.832 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.020 -7.532 0.675 12.553 hybrid contribution 0.087 0.633 -0.534 0.833 sum 10.107 -6.899 0.141 12.238 Atomic orbital electron populations 1.69962 1.04874 1.24831 1.56988 1.24687 0.95530 0.97469 1.02009 0.86267 0.80063 0.84251 0.77097 1.19108 1.22104 1.21763 1.18935 0.90282 0.82016 1.43821 0.90366 1.44274 1.01486 0.99000 1.86530 1.21226 0.84160 0.88334 1.00937 1.23156 0.96125 0.99664 0.99229 1.22397 0.97091 0.97656 0.95034 0.90608 1.21911 0.95653 1.03510 0.94875 1.21673 0.89021 0.91704 0.98160 1.47747 1.42095 1.34262 1.07803 1.17115 0.79638 0.78826 0.86084 1.90781 1.67447 1.69900 1.13375 1.19921 0.99835 0.97220 0.89171 1.20766 0.99617 0.93102 1.00744 1.18156 1.01332 0.94975 0.96816 1.20380 0.94995 0.94824 0.97888 1.20542 1.01291 0.99579 0.95897 1.20769 0.99400 0.92664 0.98730 1.20005 0.99141 0.98618 0.97273 1.18322 0.96232 0.88001 0.97397 1.42635 1.38283 1.15254 1.22484 0.73816 1.22095 1.00712 1.01310 0.79966 1.20642 0.90655 0.88373 0.95663 0.95572 0.93951 0.93616 0.93999 0.92215 0.92733 0.89958 0.91910 0.91797 0.89274 0.83233 0.86113 0.86280 0.85951 0.86278 0.88597 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.38 55.49 0.58 -26.25 16 2 C 0.00 -0.01 5.49 -17.43 -0.10 -0.11 16 3 Si 0.89 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 7 C -0.22 -5.83 9.70 -15.06 -0.15 -5.97 16 8 H 0.08 2.00 5.79 -52.48 -0.30 1.69 16 9 N -0.59 -13.74 3.20 -164.39 -0.53 -14.27 16 10 C 0.18 4.13 4.62 -2.74 -0.01 4.11 16 11 C -0.14 -2.52 6.33 -24.33 -0.15 -2.67 16 12 C -0.10 -1.62 3.68 -88.42 -0.32 -1.94 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.93 5.06 -26.51 -0.13 -2.07 16 15 C 0.12 1.78 6.47 -3.51 -0.02 1.76 16 16 N -0.59 -10.14 2.96 -175.18 -0.52 -10.66 16 17 C 0.60 11.61 7.64 -12.68 -0.10 11.51 16 18 O -0.54 -11.68 16.44 5.24 0.09 -11.59 16 19 C 0.05 0.88 5.80 -82.29 -0.48 0.40 16 20 C -0.12 -2.19 10.65 -39.15 -0.42 -2.61 16 21 C -0.11 -1.91 6.16 -106.93 -0.66 -2.57 16 22 C -0.06 -0.96 10.06 -39.53 -0.40 -1.36 16 23 C -0.15 -2.08 9.97 -39.97 -0.40 -2.48 16 24 C -0.10 -1.24 10.02 -39.52 -0.40 -1.64 16 25 C -0.13 -1.81 10.08 -39.42 -0.40 -2.21 16 26 C 0.11 1.81 7.25 -83.97 -0.61 1.20 16 27 N -0.58 -9.21 4.62 -7.35 -0.03 -9.25 16 28 H 0.42 5.59 6.42 -40.82 -0.26 5.33 16 29 C 0.08 1.34 4.77 -4.77 -0.02 1.32 16 30 C 0.16 2.85 2.97 -68.28 -0.20 2.65 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.05 1.20 7.04 -51.93 -0.37 0.84 16 34 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 35 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.67 6.85 -51.93 -0.36 1.31 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.44 7.05 -51.93 -0.37 1.07 16 41 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 42 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.10 1.63 2.44 -51.93 -0.13 1.50 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -32.59 363.75 -11.30 -43.89 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.37 Total: 7.71 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -4.96 Total: -2.67 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.50 Total: -60.42 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.59 -11.30 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042346400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.754 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds