Wall clock time and date at job start Tue Mar 31 2020 23:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47237 * 274.98018 * 3 2 1 5 5 H 1.48492 * 109.47433 * 34.98061 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.98148 * 3 2 1 7 7 C 1.38811 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 172.31602 * 7 2 1 9 9 N 1.36930 * 119.99937 * 352.31024 * 7 2 1 10 10 C 1.48386 * 126.56215 * 355.82935 * 9 7 2 11 11 C 1.55469 * 106.97260 * 174.50967 * 10 9 7 12 12 C 1.53221 * 101.28027 * 336.94511 * 11 10 9 13 13 H 1.08994 * 111.56193 * 282.59846 * 12 11 10 14 14 C 1.45023 * 126.56298 * 175.87569 * 9 7 2 15 15 H 1.09009 * 108.70503 * 96.46838 * 14 9 7 16 16 C 1.51080 * 119.19472 * 331.19018 * 14 9 7 17 17 C 1.53873 * 107.34575 * 176.74076 * 16 14 9 18 18 C 1.52715 * 111.52501 * 56.92494 * 17 16 14 19 19 N 1.45619 * 115.88295 * 153.35117 * 12 11 10 20 20 C 1.34775 * 122.16162 * 10.08731 * 19 12 11 21 21 O 1.21676 * 119.99875 * 5.33013 * 20 19 12 22 22 C 1.46914 * 120.00098 * 185.32907 * 20 19 12 23 23 C 1.36367 * 126.76835 * 27.86240 * 22 20 19 24 24 N 1.35470 * 109.76825 * 180.02562 * 23 22 20 25 25 H 0.97006 * 124.78530 * 179.97438 * 24 23 22 26 26 C 1.37954 * 110.43052 * 359.97438 * 24 23 22 27 27 C 1.39117 * 133.19372 * 180.02562 * 26 24 23 28 28 C 1.37774 * 119.93017 * 179.26092 * 27 26 24 29 29 C 1.38756 * 120.63280 * 0.57774 * 28 27 26 30 30 C 1.37749 * 120.30084 * 359.64135 * 29 28 27 31 31 C 1.39276 * 119.67299 * 359.97438 * 30 29 28 32 32 H 0.97005 * 120.00156 * 359.97438 * 1 2 3 33 33 H 1.08991 * 109.96360 * 293.89495 * 10 9 7 34 34 H 1.09001 * 109.95599 * 55.10344 * 10 9 7 35 35 H 1.09009 * 110.98682 * 95.50137 * 11 10 9 36 36 H 1.09001 * 110.98787 * 219.26919 * 11 10 9 37 37 H 1.08994 * 109.88518 * 57.27825 * 16 14 9 38 38 H 1.09000 * 109.87950 * 296.19197 * 16 14 9 39 39 H 1.09003 * 109.06582 * 296.40065 * 17 16 14 40 40 H 1.08996 * 109.01536 * 177.42582 * 17 16 14 41 41 H 1.09000 * 109.15818 * 71.87111 * 18 17 16 42 42 H 1.09003 * 109.16063 * 191.10991 * 18 17 16 43 43 H 1.08003 * 125.11817 * 0.02562 * 23 22 20 44 44 H 1.07996 * 120.03828 * 359.97438 * 27 26 24 45 45 H 1.07999 * 119.68509 * 180.17238 * 28 27 26 46 46 H 1.07997 * 119.84833 * 179.62228 * 29 28 27 47 47 H 1.08001 * 120.16380 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0830 -1.2063 -0.1256 9 7 1.3348 -2.3827 0.1576 10 6 -0.1160 -2.5421 0.4254 11 6 -0.4207 -4.0660 0.3821 12 6 0.7404 -4.5796 -0.4755 13 1 0.5776 -4.3757 -1.5338 14 6 1.9006 -3.7166 0.0964 15 1 2.1141 -4.0527 1.1111 16 6 3.1193 -3.9615 -0.7623 17 6 3.5331 -5.4301 -0.5633 18 6 2.3911 -6.3851 -0.9038 19 7 1.1342 -5.9632 -0.2494 20 6 0.3998 -6.8039 0.5057 21 8 -0.6768 -6.4446 0.9444 22 6 0.8990 -8.1541 0.7992 23 6 2.2037 -8.5447 0.8691 24 7 2.2714 -9.8658 1.1612 25 1 3.0948 -10.3688 1.2618 26 6 1.0045 -10.3949 1.2953 27 6 0.5311 -11.6706 1.5849 28 6 -0.8252 -11.8978 1.6690 29 6 -1.7293 -10.8672 1.4555 30 6 -1.2803 -9.5982 1.1631 31 6 0.0883 -9.3525 1.0829 32 1 -0.4850 0.8401 0.0004 33 1 -0.3589 -2.1418 1.4096 34 1 -0.6945 -2.0245 -0.3398 35 1 -0.4007 -4.4967 1.3833 36 1 -1.3767 -4.2592 -0.1047 37 1 3.9301 -3.3026 -0.4517 38 1 2.8765 -3.7836 -1.8099 39 1 3.8249 -5.5801 0.4761 40 1 4.3848 -5.6494 -1.2072 41 1 2.2453 -6.3977 -1.9839 42 1 2.6510 -7.3884 -0.5662 43 1 3.0549 -7.8981 0.7148 44 1 1.2262 -12.4794 1.7551 45 1 -1.1882 -12.8891 1.8968 46 1 -2.7899 -11.0609 1.5185 47 1 -1.9860 -8.7977 0.9969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049576774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:43 Heat of formation + Delta-G solvation = 79.332251 kcal Electronic energy + Delta-G solvation = -29892.243156 eV Core-core repulsion = 26041.915489 eV Total energy + Delta-G solvation = -3850.327667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68091 -39.98895 -37.49834 -37.12946 -35.39047 -32.58324 -32.46976 -31.82012 -29.71589 -29.55031 -28.64220 -27.99278 -24.94194 -24.42719 -23.18055 -22.23015 -22.02046 -21.43195 -20.55044 -19.56630 -18.73566 -17.78961 -16.84744 -16.57004 -16.08451 -15.58264 -15.42882 -14.89717 -14.80937 -14.46855 -14.35292 -14.03573 -14.01699 -13.63654 -13.50213 -13.28553 -13.17509 -12.47113 -12.35177 -12.21597 -11.89541 -11.83154 -11.75855 -11.49048 -11.13457 -11.04503 -10.81512 -10.63797 -10.50169 -10.39411 -10.07951 -9.91908 -9.83436 -9.74673 -9.59557 -8.97973 -8.58830 -8.47006 -8.16494 -7.86512 -6.78018 -5.64362 -3.01631 0.84929 1.40775 1.98900 2.75646 3.25174 3.41762 3.45033 3.48049 3.49734 3.83928 4.46834 4.52271 4.55811 4.64409 4.85675 4.93887 5.02200 5.06949 5.17174 5.30023 5.37076 5.39697 5.48673 5.50924 5.54837 5.65355 5.72165 5.81155 5.91812 5.93461 6.03753 6.13155 6.23746 6.29859 6.34542 6.35266 6.42677 6.47899 6.52996 6.62834 6.76842 6.87765 6.92877 6.96542 7.15374 7.26129 7.58178 7.71040 7.83996 7.90323 8.31123 8.60200 9.22276 9.87179 10.55721 11.44515 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.002830 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.290132 B = 9892.562513 C =10760.575898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.125 4.125 12 C 0.120 3.880 13 H 0.080 0.920 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.114 4.114 17 C -0.131 4.131 18 C 0.090 3.910 19 N -0.597 5.597 20 C 0.589 3.411 21 O -0.530 6.530 22 C -0.211 4.211 23 C 0.088 3.912 24 N -0.582 5.582 25 H 0.418 0.582 26 C 0.086 3.914 27 C -0.131 4.131 28 C -0.100 4.100 29 C -0.144 4.144 30 C -0.061 4.061 31 C -0.065 4.065 32 H 0.252 0.748 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.190 0.810 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -24.771 -0.053 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.039 3.961 11 C -0.164 4.164 12 C 0.015 3.985 13 H 0.098 0.902 14 C 0.048 3.952 15 H 0.035 0.965 16 C -0.153 4.153 17 C -0.170 4.170 18 C -0.033 4.033 19 N -0.330 5.330 20 C 0.378 3.622 21 O -0.407 6.407 22 C -0.222 4.222 23 C -0.043 4.043 24 N -0.184 5.184 25 H 0.256 0.744 26 C -0.020 4.020 27 C -0.151 4.151 28 C -0.120 4.120 29 C -0.163 4.163 30 C -0.079 4.079 31 C -0.069 4.069 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.206 0.794 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.013 -24.377 0.207 24.888 hybrid contribution 1.060 0.725 -0.008 1.284 sum 6.072 -23.652 0.199 24.419 Atomic orbital electron populations 1.69940 1.04913 1.24963 1.56589 1.24802 0.95607 0.97635 1.02387 0.86155 0.78672 0.83842 0.77410 1.21722 1.21684 1.20738 1.18972 0.90819 0.82522 1.43066 0.90447 1.44120 1.04833 0.99332 1.83313 1.21871 0.84548 0.89371 1.00326 1.22838 0.96122 0.97424 0.99971 1.22370 0.98364 0.78290 0.99436 0.90199 1.20808 0.91602 0.87124 0.95646 0.96467 1.21409 0.99162 0.93922 1.00802 1.21931 0.97105 0.96138 1.01822 1.22188 0.84328 0.98835 0.97922 1.47808 1.23452 1.11946 1.49770 1.17162 0.84005 0.82845 0.78227 1.90792 1.21354 1.76094 1.52502 1.20221 0.92129 0.94139 1.15746 1.22517 0.98409 0.84249 0.99086 1.41564 1.07085 1.08653 1.61120 0.74438 1.18257 0.84089 0.94904 1.04702 1.19981 0.95955 0.93268 1.05907 1.20811 0.92031 0.99147 0.99968 1.20968 0.99695 0.92664 1.03001 1.20703 0.93639 0.96992 0.96567 1.18764 0.93125 0.91259 1.03769 0.93769 0.95342 0.91141 0.90454 0.91900 0.91522 0.91700 0.91954 0.90938 0.91581 0.89207 0.79393 0.86246 0.85727 0.85779 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 10.55 55.49 0.59 -26.71 16 2 C -0.01 -0.22 5.46 -17.43 -0.10 -0.31 16 3 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.23 9.91 -15.06 -0.15 -6.38 16 8 H 0.08 2.04 7.39 -52.48 -0.39 1.66 16 9 N -0.59 -15.22 3.34 -163.28 -0.55 -15.77 16 10 C 0.16 4.18 5.58 -1.69 -0.01 4.17 16 11 C -0.13 -2.73 4.87 -25.31 -0.12 -2.85 16 12 C 0.12 2.33 3.31 -66.96 -0.22 2.10 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 14 C 0.16 3.28 2.59 -68.36 -0.18 3.10 16 15 H 0.02 0.40 8.06 -51.92 -0.42 -0.02 16 16 C -0.11 -1.91 5.46 -27.24 -0.15 -2.06 16 17 C -0.13 -1.54 5.90 -26.42 -0.16 -1.70 16 18 C 0.09 1.05 5.82 -3.45 -0.02 1.03 16 19 N -0.60 -9.59 2.91 -165.64 -0.48 -10.08 16 20 C 0.59 10.09 7.56 -12.75 -0.10 10.00 16 21 O -0.53 -10.88 13.87 5.21 0.07 -10.81 16 22 C -0.21 -2.94 5.88 -103.31 -0.61 -3.55 16 23 C 0.09 0.86 9.69 -16.62 -0.16 0.70 16 24 N -0.58 -4.71 5.99 -10.49 -0.06 -4.77 16 25 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 26 C 0.09 0.92 7.26 -83.97 -0.61 0.31 16 27 C -0.13 -1.17 10.07 -39.43 -0.40 -1.57 16 28 C -0.10 -0.89 10.01 -39.56 -0.40 -1.29 16 29 C -0.14 -1.50 10.03 -39.57 -0.40 -1.90 16 30 C -0.06 -0.80 10.08 -39.37 -0.40 -1.19 16 31 C -0.06 -0.88 6.30 -104.95 -0.66 -1.54 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.07 1.98 6.76 -51.93 -0.35 1.62 16 35 H 0.08 1.77 6.41 -51.92 -0.33 1.43 16 36 H 0.06 1.35 8.12 -51.93 -0.42 0.92 16 37 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.80 3.30 -51.93 -0.17 0.63 16 43 H 0.19 1.33 5.95 -52.48 -0.31 1.01 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 1.86 7.95 -52.49 -0.42 1.44 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -34.69 365.24 -11.29 -45.98 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.52 Total: 2.44 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.82 Total: -2.93 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.51 Total: -57.32 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.69 -11.29 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049576774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.314 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds